LOC110537640 (LOC106567637)


Basic Information

Item Value
gene id LOC110537640
gene name LOC106567637
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 43840844 ~ 43863956 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021623829.2
GCGTTCTGGGCCCAATGGCGAGAACAAGCAGGTGATAGCAAGGGAAAAATCAAGAAATCTTTATTAGAGTGCCTACGAAGAGGTTTTTAGTTAATAGATCAAGCCAACAGTAAGAAGTATCACCTAAAATAATACAGTTTAGCTTGCTGCAAGTAAAGGCGTGCGCTTTCATTTTGTTTATATTGTTGTTTAAACCAGTCTGCTTCAAAGAACTGAACTGCTGGAGTGGAGAAGGTCACCATGAGGAGGAAGCTGACTTTATGGGCTCCCTTCTGCCTCGTCTTGGCTCTGCTGCCTTCAAAAACAGCCTCTGTTGCAGTCATGTCAGTTGACCTGGGCAGTGAGTGGATGAAAGTAGCGATAGTGAAACCTGGCGTGCCAATGGAGATTGCTCTAAACAAGGAGTCCAGGAGGAAAACGCCAATAGCTGTGTGTTTAAAAGAAAACGAGAGACTTTTTGGAGACAGTGCATTGGGAGTGTCTGTGAAGAACCCCAAATTTGTCTATAGGCATCTTCAGAGCCTCCTTGGCAAGAAGCATGACAACCCACAGGTGGCGGTCTATCAGAAACGCTTCCCCGAGCACCATCTGGTGACAGATGAGAGTCGGGGCACAGTTCTCTTTAGCAACTCGGAAGAAATGCAGTACTCTCCAGAGGAGCTCCTGGGCATGGTTTTGAACTATTCACGTGGACTTGCTCAGGACTTTGCAGAGCAGCCCATCAAAGATGCAGTGATCACCGTCCCAGTCTTTTTCAATCAGGCAGAGCGCAGAGCAGTCCTGCAGGCCGCACAGATGGCAAGTGTTAAAGTCCTTCAGCTCATCAACGACAACACGGCGGTGGCACTCAACTACGGCGTCTTCAGGAGAAAAGACATCAACAGCACAGCACAGAACATAATGTTCTATGACATGGGTTCAGGCAGCACAACGGCAACCATCGTCACATACCAGACAGTCAAAACTGAAGAGTCGGGTTCCCAGCCACAACTCCAGATACGAGGAGTGGGGTTTGACCGCTCTCTGGGGGGCTTTGAGATGGAGCTGCGGCTGCAGGACCACCTGGCCAAGCTATTCAACGAGCAGAAGAAGACCAAGAAGGACGTGAGGGAGAACCACCGGGCCATGGCCAAGCTCCTCAAGGAGGCCCAGAGACTCAAGACTGTGCTGAGCGCTAATGCCGAATTCATGGCACAGGTGGAAGGGCTGCTGGATGACATGGATTTCAAGGCCAAGGTGACCCGTGTGGAGTTTGAGACCCTGTGTGCTGACCTTTTTGAGAGAGTGCCTGGCCCTGTACAGGATGCCCTCAGCTCTGCAGAGATGTCCCTGGATGAGATCGAGCAGGTGATCCTTGTGGGTGGCTCCACCCGAGTGCCTAAGGTGCAAGAAGTGCTGCTCAAAGCCGTTGGGAAAGAGGAGCTAGGGAAGAACCTCAACGCAGATGAGGCTGCAGCCATGGGGGCTGTGTACCAGGCCGCTGCCCTCAGCAAGGCCTTCAAAGTCCAACCTTTCCTGGTTAGAGAGGCAACCGTTTTCCCCATTCAGGTGGAGTTCACAAGTGAGATGGAGGAGGATGGTTCCAGGATCCTGAAGCACAACAAGCATATTCTGTTCCAGAGGATGGCCCCCTACCCCCAGAGCAAGGTCTTCACCTTCAACCACACTGACGACTTTGCCTTCAACATCAACTACGGCGATCTCAGTTTCCTTGGCCAGGAAGACCTCAGTGTCTTTGGCTCTCTCAACCTGACCACAGTGCAGCTGTCTGGGGTGGGCAGCAGCTTCCAGAAGCACACAGATGCTGAGTACAAGGGCATCAATGCCAGCTTCAACATGAACGAGAGTGGCGTGCTCCTCCTTGACCGGGTGGTGTCTGTGTTTGAGACCGTTGTGGAGGAGGAGTCTACTCTGACAAAACTGGGAAATACAATTTCCAACCTGTTTGGAGGGGGATCCTCGGAACCCAACACAAATGTGACTGAACCAGTTCAGGATGAGAAGGTTCATCCGGAGTCTGTGAAGGAGCAAGAGGAGGCTGCGccccaggaagagaagcaggAGCCTGGGGAGgaacagcagcaggaggaggtggCCCCAACCCACGAGAAGACTGAGGGAGTAGACAGTAAGGCTGACCTTCAGGATGAAAAGGAGGGAGCCAAATCTGGAGAAGAGGAGAAAACGACAGAGGAGGCGGCTAAGACTGAGGCCGAGAAGAAAGCCAAGCATCAGAAGAAAAACGAGATCTATGAGGATGTCACAGTGGAGCTCCAAGTGAAAGACATCCTTAACCTTCATTTAGAAGCCGTCACCTCCTCAAACAAGAAGCTCCAAGACCTGACTGATCGAGACCTGaagaaacaggagagggagaagacacTGAACAGCCTTGAGGCATTCCTTTTTGATACCCAGGACAAAATGTACCAGGAGGAGTACCAGGCAGTGGTgttggaggaagagaaggaaaccATCCTGGCCAAGCTGAGTCAAGTGTCGACCTGGATGGACGAGGATGGCTACTCTGCGTCCACCAAGGAGTTGCGGGAGAAGCTGCGATATCTCAGAAAGCTGTGCAGGGACATGTTCTTCCGCGTGGAAGAGCGCAGGAAGTGGCCTGGCCACCTGGCCACCCTGGAGAGCATGCTCAACCGCTCCAGCTTCTTCCTCAGGAGCTCCAAACTTGTATCAGAGGATGACCGAATCTTCACTGACGTGGAGCTGAAGACGTTGGAAAAAGTCATCAATGAGACCTCTACGTGGAAGAACAACACAGTAGCTGAACAGGAGAAGAGTTCTCCCACGGAACAGCCTGTGCTACTGTCCAAAGACATAGAGTCCAAGTGGGCTTTGCTGGACCGCGAGGTCAACTACTTGCTGAACAAGGCCGCCAAGCCCAAGGCCGCCAAGCCCAAGACCGCCAAGGCCGCCAAGCCCAATAACAACAgcaccacagagaggagcagcagcaAGGCCAACAGCAGCAAAATGGAAGAGAAAGTCATACTTCCCAAGGAGGAGACCAAAGACGAAGAGGGCACTGTGAAGGTGCAGCAAGAGGAACCGCCCATCAAAGAGCCCACTGGACAGAACACAGACTTACTCAGCCAATCACAGCCTACAGATAAAACTGCAAGTACAGAGGGCACTGAGGAGGTGCAGCAAGAGGAACCACCCATCAAAGAGCCCACTGGACAGAACACAGACTCACTCAGCCAATCACAGCCTTCAGATAAAACTACAAGGACAGAACCAACAGAGAGAAACCAGTCAGAAAACCACAAAGGGGATGAGTTATAACAGCTGGAATGAGATTTCATTGTATTTGTTGACTGTTTAATGGTTTCCTACATATTTGGGGGGGTTTTGTTTTTCCAGCCTTTTATTTTGAAAACCGTAAAGTCATTGGATCAGCTCAGACTTCTTGAAATGTCATATTCCCACTACCTACCTCTCGTTCTcactttctgttcaccttcatcCCCCTCTGCGGCCGAACATCTTTCCCCTCTTACTGACATGATGAGCAAGGAGCGCTGACGAAGCCTGGAATAATAACCAGCGAATGAACTGACACAAGACTTCAAGTTTGTATTCTACCATCCTGCCCTACAGGTTTAGGCATACTTTCCCACATGCAAACAACTACTTGGACAACTGTATATTTGCCCTGCATTGAACAAAAGTGTTTTAGTTTTGGTAGGACTAATGATAACAGGACTCAATGTTTCCTCCACTGGAACTCTGTTGCATTGCATCGTTTGTCGCTTTCTGGGATCAGGAAGGGTAGTTGTGATTTGACCTCTCAAGCAGGCTTGTTTTCACGTAGCAAGTCttgcttttattttattttttgtgggTTTGCACTGGTTGTTGAGAAATATATCAAATGGGCTGGAGCTAATGTATGCTCCTCTTGGGAAATGGAATGGGTTTTAGTTGTATTTGAATATTGAATGCCTTTAATACCTTGTATTGTGGCGCATAAACAATCTGTGATTGTGTGTATACAATATCCTACAAAGGGGGAATTGATTTGTCATCCAAATATTACTGCTGACCAGACGTTAAATGTGTTCATAGGTGTAAAATCTATTTCATGCTTTTCAGAACCTTCTCGCCATGGTCTTCTGACAATTCATCAATGAATTAGCTTGAGGGAAACATTTTTTCACTGAAGTACATCTTGATTTCTAGTTTCTCTAAATTGTACTCCAATACATAAAGTTAAACTTCAATTACCAAGGTTTTTTGGGCTAGCCAttggttgtgttcagtaggtgaaAAAAATGGCATTGATTATCGTTTTGTTACGCTGTgcactactgaacacaaccctggtcTTTGTATGGCTGCAAGTATGAATTTGAGGGCTGCTCAACTGTTGCACTGACGGAAGAATAAGTAGATATTATCCATGTCTAAAGCTGCTTGAATCTCTACCAGAGGAGTGTGGTTCCTGTTCTTTGCATCACCTCAGATGGTTTGAGGGGGAATAAACTAACGGGATTGGGGGATGCCAATGCTTTTGTTTCTAAACTGTTAAtagtattaaaaaaaatatggtgATCAACAGT

Function

NR:

description
hypoxia up-regulated protein 1-like

GO: NA

KEGG:

id description
K09486 HYOU1; hypoxia up-regulated 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021623829.2 True 4580 mRNA 0.48 25 43840844 43863956

Neighbor

gene id symbol gene type direction distance location
LOC110537639 zgc:101846 coding downstream 14476 43825477 ~ 43826368 (-)
LOC110537637 LOC106567642 coding downstream 71331 43757940 ~ 43769513 (-)
LOC118937901 NA coding downstream 111992 43728759 ~ 43728852 (-)
LOC118937905 NA coding downstream 112671 43728080 ~ 43728173 (-)
LOC118937903 NA coding downstream 113462 43727289 ~ 43727382 (-)
LOC110537642 LOC106567634 coding upstream 56938 43920894 ~ 43945854 (-)
LOC110537647 LOC106567631 coding upstream 242678 44106634 ~ 44109916 (-)
LOC110537649 LOC106567630 coding upstream 262970 44126926 ~ 44135806 (-)
LOC110537650 LOC106567629 coding upstream 296970 44160926 ~ 44169528 (-)
LOC118937676 NA coding upstream 338225 44202181 ~ 44208228 (-)
G1075536 NA non-coding downstream 1671 43838971 ~ 43839173 (-)
G1075535 NA non-coding downstream 2226 43838392 ~ 43838618 (-)
G1075528 NA non-coding downstream 13875 43826743 ~ 43826969 (-)
G1075427 LOC107691633 non-coding downstream 46133 43794115 ~ 43794711 (-)
G1075516 NA non-coding downstream 55557 43785056 ~ 43785287 (-)
G1075538 NA non-coding upstream 913 43864869 ~ 43865070 (-)
G1075539 vps11 non-coding upstream 2435 43866391 ~ 43867024 (-)
G1075600 NA non-coding upstream 119944 43983900 ~ 44018865 (-)
G1075664 NA non-coding upstream 199558 44063514 ~ 44063953 (-)
G1075429 NA non-coding upstream 274009 44137965 ~ 44144948 (-)
G1075509 NA other downstream 66419 43774064 ~ 43774425 (-)
G1075399 NA other downstream 180007 43660559 ~ 43660837 (-)
G1075335 NA other downstream 276604 43563785 ~ 43564240 (-)
G1074731 NA other downstream 1126921 42704003 ~ 42713923 (-)
G1073009 NA other downstream 1778212 42045863 ~ 42062632 (-)
G1076460 NA other upstream 590692 44454648 ~ 44455270 (-)
LOC110537661 LOC101073377 other upstream 682563 44546519 ~ 44601149 (-)
gria4b LOC106567580 other upstream 1269896 45133844 ~ 45296904 (-)
G1078323 LOC106567565 other upstream 2338648 46202604 ~ 46206088 (-)
G1078783 NA other upstream 2952487 46816443 ~ 46817065 (-)

Expression


Co-expression Network