vps11 (vps11)


Basic Information

Item Value
gene id vps11
gene name vps11
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 43864153 ~ 43886947 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021623830.2
GACTTTGTGGTTGCGCTATCTAGTGGAAACCACTAGAGTCGTGTTCCGCGAGGACAGCGCTGACCCTGTTGGTGCTTTCAAGACTATTTGGGGACTCGGAAATAAACAAGGtggaatcatgacgtcagtgatcttcagACAGTGCAAAGAAAATGGCTGCGTTCTTACAGTGGAGACGATTTGTGTTTTTTGATAAAGAGACCGTGAAGGACGCTGGAGATAATGGGAAGAACTTTGTCCTCCCGGTTGGCATATCTGCATGTGACTCGGGCCGGGGCCACATCGTTCTTGGAGATATGGACGGTCAGATCTGGTTTTTGACACGCTCCCTACAGTTGTCCTCCTTTCAGGCTTACAAGCTGAGAGTGACCCACCTGTACCAGCTCAAACAACACAGCATTTTGGTCACGGTTGGGCAGGATGAGCAAGGAATTAACCCCCTGGTGAAGGTATGGAATCCGGACAAGCGTGACAGCGGGAATCCTCTGTGTACCAGAATATTCCCAGCAATTCCTGGGAACAAACCAACAGAGGTGTCCTGCCTCAGTGTGCACGAGAACCTAAACTTTATGGCAATTGGCTTCACAGATGGCAGTGTGGTGTTGACAAAGGGTGACATAACCCGGGACAGGCACAGTAAAACCCTGACACTGCATGAGGGCACCTGTCCAATCACGGGCCTCGCTTTCCGTCAGCAGAGCAAAGTCACTCACTTATTTGTTGCCACTCTGGAAAAAGTCCATTGCTACACTTTGTCGGTGAAGGAGTACCCTAAACTGGAACTGGACACACACGGCTGTGCGCTGCGTTGCTCTGCACTCACAGACCCCTCCCAGGACTCCCAGTTTATTGTCGCGGGGGATGAGTGTGTGTACCTTTACCAGCCTGATGAACGGGGACCCTGTTTCGCTTTCGATGGGCACAAGCTACTGGCCCACTGGCACCGGGGCTACCTCCTGCTGCTCACCAGGGACACCAAGTCTCCCAACAAGTCTGAATTTGGGAGTAGAGAGACATCTCCTTCGGAGAAACAAATCTTGACAATCTACGACCTGGACAACAAGTTCATTGCCTACAGCGCTTCCTTTGATGACATCATCGACGTTCTGGCTGAATGGGGCTCCTTCTACATCCTGACTCGGGATGGAAAAATGTTTGTGCTGCAGGAGAAAGACACTCAGACCAAGCTAGAGATGCTCTTCAAGAAGAATCTGTTTGTGATGGCCATCAACCTGGCTAAGAGCCAGCACTTGGACAGTGACGGGCTGTCTGAGATTTTCAGGCAGTACGGTGACCACCTCTACGTGAAGGGGGACCACGATGGAGCCATCCAACAGTACATCCGCACAATCAGGAAGCTGGAGCCTTCTTACGTAATCCGGAAGTTTCTGGATGCTCAGAGGATCCACAATTTGACGGCCTACCTCCAGGCCCTGCACCGGCAGTCGCTGGCCAATGCCGACCACACCACCCTGCTGCTCAACTGCTACACCAAGCTCAAGGACAGCTCTAAGCTTGAAGAGTTCATCAAGAGCAGCGAGAGCGAGGTCCACTTCGACGTGGAGATTGCAATCAAGGTGCTGCGCCAGGCAGGCTACCACAGTCACGCAGTCTTCCTGGCCGAGAGGCACCAGCACCACAAGTGGTACCTGAAGATCCAGCTCGAGGACCTGAAGAACTACCAGGAGGCTTTGCGTTACATTGGACGACTTCCTTTCGACCAGGCAGAGAGCAACATGAAACGCTACGGCAAGACCCTGATGCACCACGTCCCCGACGGCACCACACTGCTTCTCAAGGGCCTGTGTACCGACTACCAGCCCAGCCGGGATGCCATGGAAAGAGAGAGCCTGGACAGAGGCCCGGCGGTGGCCAAGAAGGCAAATTCAGAGGAGTTCATCTCTGTGTTTGCTAATAACCCACGGGAGCTAAGGGCCTTCCTGGAGCACATGATTGAGGTGGAGCCCTTCTCCTCTCAGGGGGTGTATGACACACTGCTAGAACTACGGCTGCAGGACTGGGCACATGAACAAGACTCTGAGAGGAAGAAGGTCCTGCAGGGGGCAGCACTGTCCTTGCTGAGGAGCGACAACACCGTATTTGACAAGGCCCTCGTCCTGTGCCAGATGCACAACTTCAAAGAAGGGGTCCTGTACCTCTATGAGAAGGGCAAACTGTACCAGCAGATCATGCACTACCACATGCAGAATGAGGAGTATGGCAAAGTGGTGGAGGCCTGCAAGCGCTACGGCGACCAGGAAGTATGCTTGTGGGAGCAGGCGCTGGGATACTTTGCCCGCAAAGAGGAGGACTGCAAGGCCTACATCAGCCAAGTCCTGGAGCACATCGACCAGAACAACCTGATGCCTCCCCTATTGGTGGTGCAGACGCTGGCACACAACTCCACAGCCACGCTGTCGGTCATCAAGGACTACCTGATCAACAAGCTGCAGAGGGAGAGCCAGCAGATTGAGGACGATGAGCGTAAGATCCGCCAGTACCGCGAGGAGACGGCCCACCTCCGCGCCGAGATCCAGGAACTCAGAAGCAGcGCAAAGATTTTCCAGAAGACCAAGTGCAGCATGTGCAACAGCCCCCTCGAGCTGCCCTCTGTTCACTTCCTGTGCAGTCACTCCTTCCACCAGCACTGCTTTGAGAGCTACGCCGAGAGTGAGGCCGAATGTCCCACATGCACACCGGAAAACCGGAAGGTCATGGACATGCTGCGGGCCCAGGACCAGAAACGAGACCTGCACGACCACTTCACCAGACAGCTGCGGTGCTCCAATGATGGTTTCTCCGTGGTGGCGGACTACTTTGGCCGTGGGGTGTTCAACAAGCTGACCCTGGTCACTGACCCGCCGGGGAGCAAGGTGGGGGTGGGAAGCCTGGAGGCAGACCTGCAGAGGGACCTACTCATCCACACCAAGAGGAACACTTGAGGGCCACAAGTCACAATGGATACAACAGCTTGCAACTGTACACTattacccttttcacactatcaTGCTGACCCAAACCAAGCTGGGCTGGCTCTGATATTTTATTTTCAGATTGTCCTTTTTAGCACAGTTGGTTTGTGTGGCTCGGCTTGGTTCAACTCCATTGTGTGAAAAGCCCTTAGGTTCTGTGTTTTGCTGTCTGCTGCTCAAGCTAAGAATAAACTACTATACCCAGCTGCAATGGGGTCCCTGACCCATCGTGCTTTGTTCTGTAGTACGATGCCACAATATTTAGTCAAGATGAATCAGTCATGCTCCTGTCGCAACACCAGTAAGAGATGTGTTGATAGTTTCTGTTTCTGATGCATGTTACTTAACACGTCTGTGCATCTGGGTTGTGTTTATTAGGTGAAATTAACGGAAAACGTTTTTGCAACGTGCAATGAATATGAGCATTACTTATTGTACAGGTAGTTGCTGTTTTCTTCAATTTGGCACCTAATAAACAACCCTGGTCCAAGCACAGAGGTTCAGAATGAAGGGTGGTTGGGTGGATTTTGTTTTTATGCACTTGATTTATGTGCATTGTGTAATGTCTTTGAGCACTCTGTtagaatttgtattttttaaaagaaGACTATCTCTTGAAATGTGGCTTATTGATACTGGGAGTGTACAGATGCATATTATTCCTTGTTGTGCCTTCTTGAAATGCTGTGTGCATGTATTTTTTCCATATGGGATGTCATGCCATCTCATATTTGGATTTTATACCATGGCCttgttgaatactcgtttctgattggcttgaagggcattctcaagcgtgcattatttccctatgAAGCACGGTATATCAGCATGTAAAATTAAATCGCTGTAGTTCATGCTTACATGTTTTGTTTGAGCTGTTTTTGAAACCAAAAGTCGAATTGAAAACATTGTTGAATTTGATgttcataatagcaagctaggactgatggtttggttagctaaactaacATGTGTCTGTTTGGTTACCATAGAAACTACTGTGGCTATCTAGTAAACTTACTAggtacttcagtggatgttgaacacatttctactaaCACATTTCTAGTGGAAACtatgttaaattatagccatggttTAAAATTGATAATCAACTCTGGGCTCTATGCATTCTCTGTAAAATATTGCAACGCCATGGATGGTCAGCTAGGGCATAGTGGAACACACCTTACATGTCGTTCATTATCTTCCATAGAACACATAGCCCCTCGTTAATTATCCCTTACTTATATAAATGTAGTCCATCTCACACTTCACTTTTTAAAGTCTGAATTTGGCCAACCCCAAACATCATTAATGTCTTTAATACACTTCTCTTCAAGGTGACTGCCAGAAATGTGCATGTTGTGGCTGGTGAAACATTTTGCCTAGATAGTGTGGTATCAACCAGTGATTCTGCAATGTCTTTGTATCAATCCAGTAATGTTGTATATAGATTTGACCTGCACATTACCTGAATAATGAATGAACTAGCTACATGTCATATGCTTAGAATTCTAGTTCTATGCATTAGCATACTTGAAATGTGTCACATAAATGAtcttgtttaaaaaatgtttgctTATCTAAATAAATGTGCACAGATATTCAA
>XM_021623831.2
GAGTTCTTAGCTTTACTTTATACAGTGCAAAGAAAATGGCTGCGTTCTTACAGTGGAGACGATTTGTGTTTTTTGATAAAGAGACCGTGAAGGACGCTGGAGATAATGGGAAGAACTTTGTCCTCCCGGTTGGCATATCTGCATGTGACTCGGGCCGGGGCCACATCGTTCTTGGAGATATGGACGGTCAGATCTGGTTTTTGACACGCTCCCTACAGTTGTCCTCCTTTCAGGCTTACAAGCTGAGAGTGACCCACCTGTACCAGCTCAAACAACACAGCATTTTGGTCACGGTTGGGCAGGATGAGCAAGGAATTAACCCCCTGGTGAAGGTATGGAATCCGGACAAGCGTGACAGCGGGAATCCTCTGTGTACCAGAATATTCCCAGCAATTCCTGGGAACAAACCAACAGAGGTGTCCTGCCTCAGTGTGCACGAGAACCTAAACTTTATGGCAATTGGCTTCACAGATGGCAGTGTGGTGTTGACAAAGGGTGACATAACCCGGGACAGGCACAGTAAAACCCTGACACTGCATGAGGGCACCTGTCCAATCACGGGCCTCGCTTTCCGTCAGCAGAGCAAAGTCACTCACTTATTTGTTGCCACTCTGGAAAAAGTCCATTGCTACACTTTGTCGGTGAAGGAGTACCCTAAACTGGAACTGGACACACACGGCTGTGCGCTGCGTTGCTCTGCACTCACAGACCCCTCCCAGGACTCCCAGTTTATTGTCGCGGGGGATGAGTGTGTGTACCTTTACCAGCCTGATGAACGGGGACCCTGTTTCGCTTTCGATGGGCACAAGCTACTGGCCCACTGGCACCGGGGCTACCTCCTGCTGCTCACCAGGGACACCAAGTCTCCCAACAAGTCTGAATTTGGGAGTAGAGAGACATCTCCTTCGGAGAAACAAATCTTGACAATCTACGACCTGGACAACAAGTTCATTGCCTACAGCGCTTCCTTTGATGACATCATCGACGTTCTGGCTGAATGGGGCTCCTTCTACATCCTGACTCGGGATGGAAAAATGTTTGTGCTGCAGGAGAAAGACACTCAGACCAAGCTAGAGATGCTCTTCAAGAAGAATCTGTTTGTGATGGCCATCAACCTGGCTAAGAGCCAGCACTTGGACAGTGACGGGCTGTCTGAGATTTTCAGGCAGTACGGTGACCACCTCTACGTGAAGGGGGACCACGATGGAGCCATCCAACAGTACATCCGCACAATCAGGAAGCTGGAGCCTTCTTACGTAATCCGGAAGTTTCTGGATGCTCAGAGGATCCACAATTTGACGGCCTACCTCCAGGCCCTGCACCGGCAGTCGCTGGCCAATGCCGACCACACCACCCTGCTGCTCAACTGCTACACCAAGCTCAAGGACAGCTCTAAGCTTGAAGAGTTCATCAAGAGCAGCGAGAGCGAGGTCCACTTCGACGTGGAGATTGCAATCAAGGTGCTGCGCCAGGCAGGCTACCACAGTCACGCAGTCTTCCTGGCCGAGAGGCACCAGCACCACAAGTGGTACCTGAAGATCCAGCTCGAGGACCTGAAGAACTACCAGGAGGCTTTGCGTTACATTGGACGACTTCCTTTCGACCAGGCAGAGAGCAACATGAAACGCTACGGCAAGACCCTGATGCACCACGTCCCCGACGGCACCACACTGCTTCTCAAGGGCCTGTGTACCGACTACCAGCCCAGCCGGGATGCCATGGAAAGAGAGAGCCTGGACAGAGGCCCGGCGGTGGCCAAGAAGGCAAATTCAGAGGAGTTCATCTCTGTGTTTGCTAATAACCCACGGGAGCTAAGGGCCTTCCTGGAGCACATGATTGAGGTGGAGCCCTTCTCCTCTCAGGGGGTGTATGACACACTGCTAGAACTACGGCTGCAGGACTGGGCACATGAACAAGACTCTGAGAGGAAGAAGGTCCTGCAGGGGGCAGCACTGTCCTTGCTGAGGAGCGACAACACCGTATTTGACAAGGCCCTCGTCCTGTGCCAGATGCACAACTTCAAAGAAGGGGTCCTGTACCTCTATGAGAAGGGCAAACTGTACCAGCAGATCATGCACTACCACATGCAGAATGAGGAGTATGGCAAAGTGGTGGAGGCCTGCAAGCGCTACGGCGACCAGGAAGTATGCTTGTGGGAGCAGGCGCTGGGATACTTTGCCCGCAAAGAGGAGGACTGCAAGGCCTACATCAGCCAAGTCCTGGAGCACATCGACCAGAACAACCTGATGCCTCCCCTATTGGTGGTGCAGACGCTGGCACACAACTCCACAGCCACGCTGTCGGTCATCAAGGACTACCTGATCAACAAGCTGCAGAGGGAGAGCCAGCAGATTGAGGACGATGAGCGTAAGATCCGCCAGTACCGCGAGGAGACGGCCCACCTCCGCGCCGAGATCCAGGAACTCAGAAGCAGcGCAAAGATTTTCCAGAAGACCAAGTGCAGCATGTGCAACAGCCCCCTCGAGCTGCCCTCTGTTCACTTCCTGTGCAGTCACTCCTTCCACCAGCACTGCTTTGAGAGCTACGCCGAGAGTGAGGCCGAATGTCCCACATGCACACCGGAAAACCGGAAGGTCATGGACATGCTGCGGGCCCAGGACCAGAAACGAGACCTGCACGACCACTTCACCAGACAGCTGCGGTGCTCCAATGATGGTTTCTCCGTGGTGGCGGACTACTTTGGCCGTGGGGTGTTCAACAAGCTGACCCTGGTCACTGACCCGCCGGGGAGCAAGGTGGGGGTGGGAAGCCTGGAGGCAGACCTGCAGAGGGACCTACTCATCCACACCAAGAGGAACACTTGAGGGCCACAAGTCACAATGGATACAACAGCTTGCAACTGTACACTattacccttttcacactatcaTGCTGACCCAAACCAAGCTGGGCTGGCTCTGATATTTTATTTTCAGATTGTCCTTTTTAGCACAGTTGGTTTGTGTGGCTCGGCTTGGTTCAACTCCATTGTGTGAAAAGCCCTTAGGTTCTGTGTTTTGCTGTCTGCTGCTCAAGCTAAGAATAAACTACTATACCCAGCTGCAATGGGGTCCCTGACCCATCGTGCTTTGTTCTGTAGTACGATGCCACAATATTTAGTCAAGATGAATCAGTCATGCTCCTGTCGCAACACCAGTAAGAGATGTGTTGATAGTTTCTGTTTCTGATGCATGTTACTTAACACGTCTGTGCATCTGGGTTGTGTTTATTAGGTGAAATTAACGGAAAACGTTTTTGCAACGTGCAATGAATATGAGCATTACTTATTGTACAGGTAGTTGCTGTTTTCTTCAATTTGGCACCTAATAAACAACCCTGGTCCAAGCACAGAGGTTCAGAATGAAGGGTGGTTGGGTGGATTTTGTTTTTATGCACTTGATTTATGTGCATTGTGTAATGTCTTTGAGCACTCTGTtagaatttgtattttttaaaagaaGACTATCTCTTGAAATGTGGCTTATTGATACTGGGAGTGTACAGATGCATATTATTCCTTGTTGTGCCTTCTTGAAATGCTGTGTGCATGTATTTTTTCCATATGGGATGTCATGCCATCTCATATTTGGATTTTATACCATGGCCttgttgaatactcgtttctgattggcttgaagggcattctcaagcgtgcattatttccctatgAAGCACGGTATATCAGCATGTAAAATTAAATCGCTGTAGTTCATGCTTACATGTTTTGTTTGAGCTGTTTTTGAAACCAAAAGTCGAATTGAAAACATTGTTGAATTTGATgttcataatagcaagctaggactgatggtttggttagctaaactaacATGTGTCTGTTTGGTTACCATAGAAACTACTGTGGCTATCTAGTAAACTTACTAggtacttcagtggatgttgaacacatttctactaaCACATTTCTAGTGGAAACtatgttaaattatagccatggttTAAAATTGATAATCAACTCTGGGCTCTATGCATTCTCTGTAAAATATTGCAACGCCATGGATGGTCAGCTAGGGCATAGTGGAACACACCTTACATGTCGTTCATTATCTTCCATAGAACACATAGCCCCTCGTTAATTATCCCTTACTTATATAAATGTAGTCCATCTCACACTTCACTTTTTAAAGTCTGAATTTGGCCAACCCCAAACATCATTAATGTCTTTAATACACTTCTCTTCAAGGTGACTGCCAGAAATGTGCATGTTGTGGCTGGTGAAACATTTTGCCTAGATAGTGTGGTATCAACCAGTGATTCTGCAATGTCTTTGTATCAATCCAGTAATGTTGTATATAGATTTGACCTGCACATTACCTGAATAATGAATGAACTAGCTACATGTCATATGCTTAGAATTCTAGTTCTATGCATTAGCATACTTGAAATGTGTCACATAAATGAtcttgtttaaaaaatgtttgctTATCTAAATAAATGTGCACAGATATTCAA

Function

symbol description
vps11 Predicted to enable protein-macromolecule adaptor activity. Acts upstream of or within several processes, including animal organ development; melanocyte apoptotic process; and melanocyte differentiation. Predicted to be located in cytoplasmic vesicle and vacuole. Predicted to be part of HOPS complex. Predicted to be active in endosome. Is expressed in brain; heart; immature eye; and retina. Human ortholog(s) of this gene implicated in hypomyelinating leukodystrophy 12. Orthologous to human VPS11 (VPS11 core subunit of CORVET and HOPS complexes).

NR:

description
vacuolar protein sorting-associated protein 11 homolog isoform X1

GO: NA

KEGG:

id description
K20179 VPS11, PEP5; vacuolar protein sorting-associated protein 11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021623830.2 False 4587 mRNA 0.49 17 43864153 43886947
XM_021623831.2 True 4470 mRNA 0.48 17 43864890 43886947
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Neighbor

gene id symbol gene type direction distance location
zpr1 LOC106567639 coding upstream 38864 43804220 ~ 43825289 (+)
LOC100135842 LOC106567641 coding upstream 61961 43792121 ~ 43802192 (+)
LOC118937904 NA coding upstream 63511 43800549 ~ 43800642 (+)
LOC110537636 LOC106567643 coding upstream 139038 43708335 ~ 43725115 (+)
bsx LOC106567644 coding upstream 218785 43643305 ~ 43645368 (+)
ift46 ck060 coding downstream 307 43887254 ~ 43904447 (+)
LOC110537644 LOC106567633 coding downstream 136641 44023588 ~ 44074012 (+)
LOC110537645 NA coding downstream 191873 44077132 ~ 44083242 (+)
LOC110537648 LOC106567632 coding downstream 205666 44092613 ~ 44106531 (+)
LOC118937675 NA coding downstream 209571 44096518 ~ 44097355 (+)
G1074261 NA non-coding upstream 30327 43833465 ~ 43833826 (+)
G1074255 NA non-coding upstream 37142 43826788 ~ 43827011 (+)
G1074238 NA non-coding upstream 80373 43783568 ~ 43783780 (+)
G1074234 NA non-coding upstream 84846 43779068 ~ 43779307 (+)
G1074145 NA non-coding upstream 112090 43725354 ~ 43752063 (+)
G1074437 LOC106567630 non-coding downstream 245740 44127632 ~ 44134118 (+)
G1074440 NA non-coding downstream 249522 44136469 ~ 44136703 (+)
G1074441 NA non-coding downstream 249820 44136767 ~ 44137140 (+)
G1074442 NA non-coding downstream 250695 44137642 ~ 44139538 (+)
G1074270 LOC106567637 other upstream 3544 43856750 ~ 43860609 (+)
G1074265 NA other upstream 18185 43845167 ~ 43845968 (+)
G1072789 NA other upstream 1647990 42197050 ~ 42216163 (+)
G1071159 NA other upstream 2726285 41137436 ~ 41137868 (+)
G1071144 NA other upstream 2749196 41114578 ~ 41114957 (+)
G1075891 capns1 other downstream 543130 44430077 ~ 44439184 (+)
G1075963 NA other downstream 564359 44451306 ~ 44451940 (+)
G1075958 NA other downstream 586801 44473748 ~ 44475666 (+)
G1077158 NA other downstream 1724598 45611545 ~ 45613765 (+)

Expression

vps11(vps11) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 30.
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vps11(vps11) Expression in each Bioproject

Bar chart with 21 bars.
vps11(vps11) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1000.
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Co-expression Network