Gene
RNA
| Item | Value |
|---|---|
| gene id | ift46 |
| gene name | ck060 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048576.1 |
| NCBI id | CM023230.2 |
| chromosome length | 102853256 |
| location | 43887254 ~ 43904447 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| intraflagellar transport protein 46 homolog |
| id | name | namespace |
|---|---|---|
| GO:0042073 | intraciliary transport | biological_process |
| GO:0048264 | determination of ventral identity | biological_process |
| GO:0005856 | cytoskeleton | cellular_component |
| GO:0005929 | cilium | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| id | description |
|---|---|
| K19682 | IFT46; intraflagellar transport protein 46 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| NM_001165237.1 | True | 1351 | mRNA | 0.47 | 12 | 43887254 | 43904447 |
43,884,000
43,886,000
43,888,000
43,890,000
43,892,000
43,894,000
43,896,000
43,898,000
43,900,000
43,902,000
43,902,000
43,904,000
43,906,000
43,908,000
43,910,000
43,912,000
43,914,000
43,916,000
43,918,000
43,920,000
43,922,000
NC_048576.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| vps11 | vps11 | coding | upstream | 307 | 43864153 ~ 43886947 (+) |
| zpr1 | LOC106567639 | coding | upstream | 61965 | 43804220 ~ 43825289 (+) |
| LOC100135842 | LOC106567641 | coding | upstream | 85062 | 43792121 ~ 43802192 (+) |
| LOC118937904 | NA | coding | upstream | 86612 | 43800549 ~ 43800642 (+) |
| LOC110537636 | LOC106567643 | coding | upstream | 162139 | 43708335 ~ 43725115 (+) |
| LOC110537644 | LOC106567633 | coding | downstream | 119141 | 44023588 ~ 44074012 (+) |
| LOC110537645 | NA | coding | downstream | 174373 | 44077132 ~ 44083242 (+) |
| LOC110537648 | LOC106567632 | coding | downstream | 188166 | 44092613 ~ 44106531 (+) |
| LOC118937675 | NA | coding | downstream | 192071 | 44096518 ~ 44097355 (+) |
| LOC110537651 | LOC106567627 | coding | downstream | 316534 | 44220981 ~ 44225623 (+) |
| G1074261 | NA | non-coding | upstream | 53428 | 43833465 ~ 43833826 (+) |
| G1074255 | NA | non-coding | upstream | 60243 | 43826788 ~ 43827011 (+) |
| G1074238 | NA | non-coding | upstream | 103474 | 43783568 ~ 43783780 (+) |
| G1074234 | NA | non-coding | upstream | 107947 | 43779068 ~ 43779307 (+) |
| G1074145 | NA | non-coding | upstream | 135191 | 43725354 ~ 43752063 (+) |
| G1074437 | LOC106567630 | non-coding | downstream | 228240 | 44127632 ~ 44134118 (+) |
| G1074440 | NA | non-coding | downstream | 232022 | 44136469 ~ 44136703 (+) |
| G1074441 | NA | non-coding | downstream | 232320 | 44136767 ~ 44137140 (+) |
| G1074442 | NA | non-coding | downstream | 233195 | 44137642 ~ 44139538 (+) |
| G1074270 | LOC106567637 | other | upstream | 26645 | 43856750 ~ 43860609 (+) |
| G1074265 | NA | other | upstream | 41286 | 43845167 ~ 43845968 (+) |
| G1072789 | NA | other | upstream | 1671091 | 42197050 ~ 42216163 (+) |
| G1071159 | NA | other | upstream | 2749386 | 41137436 ~ 41137868 (+) |
| G1071144 | NA | other | upstream | 2772297 | 41114578 ~ 41114957 (+) |
| G1075891 | capns1 | other | downstream | 525630 | 44430077 ~ 44439184 (+) |
| G1075963 | NA | other | downstream | 546859 | 44451306 ~ 44451940 (+) |
| G1075958 | NA | other | downstream | 569301 | 44473748 ~ 44475666 (+) |
| G1077158 | NA | other | downstream | 1707098 | 45611545 ~ 45613765 (+) |
