Item | Value |
---|---|
gene id | LOC110537642 |
gene name | LOC106567634 |
gene type | coding |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048576.1 |
NCBI id | CM023230.2 |
chromosome length | 102853256 |
location | 43920894 ~ 43945854 (-) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
description |
---|
HMG box transcription factor BBX isoform X1 |
id | description |
---|---|
K21643 | BBX, HBP2; HMG box transcription factor BBX |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_021623836.2 | False | 7158 | mRNA | 0.46 | 17 | 43920894 | 43945570 |
XM_021623835.2 | False | 6820 | mRNA | 0.46 | 17 | 43920894 | 43945854 |
XM_036937621.1 | False | 6817 | mRNA | 0.46 | 17 | 43920894 | 43945854 |
XM_036937623.1 | False | 6730 | mRNA | 0.46 | 16 | 43920894 | 43945854 |
XM_036937622.1 | True | 3194 | mRNA | 0.55 | 17 | 43924697 | 43945854 |
43,916,000
43,920,000
43,924,000
43,928,000
43,932,000
43,936,000
43,940,000
43,944,000
43,948,000
43,952,000
43,956,000
43,960,000
43,964,000
43,968,000
NC_048576.1
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC110537640 | LOC106567637 | coding | downstream | 56938 | 43840844 ~ 43863956 (-) |
LOC110537639 | zgc:101846 | coding | downstream | 94526 | 43825477 ~ 43826368 (-) |
LOC110537637 | LOC106567642 | coding | downstream | 151381 | 43757940 ~ 43769513 (-) |
LOC118937901 | NA | coding | downstream | 192042 | 43728759 ~ 43728852 (-) |
LOC118937905 | NA | coding | downstream | 192721 | 43728080 ~ 43728173 (-) |
LOC110537647 | LOC106567631 | coding | upstream | 160780 | 44106634 ~ 44109916 (-) |
LOC110537649 | LOC106567630 | coding | upstream | 181072 | 44126926 ~ 44135806 (-) |
LOC110537650 | LOC106567629 | coding | upstream | 215072 | 44160926 ~ 44169528 (-) |
LOC118937676 | NA | coding | upstream | 256327 | 44202181 ~ 44208228 (-) |
LOC110537653 | LOC106567625 | coding | upstream | 299753 | 44245607 ~ 44295011 (-) |
G1075539 | vps11 | non-coding | downstream | 53870 | 43866391 ~ 43867024 (-) |
G1075538 | NA | non-coding | downstream | 55824 | 43864869 ~ 43865070 (-) |
G1075536 | NA | non-coding | downstream | 81721 | 43838971 ~ 43839173 (-) |
G1075535 | NA | non-coding | downstream | 82276 | 43838392 ~ 43838618 (-) |
G1075528 | NA | non-coding | downstream | 93925 | 43826743 ~ 43826969 (-) |
G1075600 | NA | non-coding | upstream | 38046 | 43983900 ~ 44018865 (-) |
G1075664 | NA | non-coding | upstream | 117660 | 44063514 ~ 44063953 (-) |
G1075429 | NA | non-coding | upstream | 192111 | 44137965 ~ 44144948 (-) |
G1075693 | NA | non-coding | upstream | 211319 | 44157173 ~ 44157466 (-) |
G1075711 | NA | non-coding | upstream | 244823 | 44190677 ~ 44190878 (-) |
G1075509 | NA | other | downstream | 146469 | 43774064 ~ 43774425 (-) |
G1075399 | NA | other | downstream | 260057 | 43660559 ~ 43660837 (-) |
G1075335 | NA | other | downstream | 356654 | 43563785 ~ 43564240 (-) |
G1074731 | NA | other | downstream | 1206971 | 42704003 ~ 42713923 (-) |
G1073009 | NA | other | downstream | 1858262 | 42045863 ~ 42062632 (-) |
G1076460 | NA | other | upstream | 508794 | 44454648 ~ 44455270 (-) |
LOC110537661 | LOC101073377 | other | upstream | 600665 | 44546519 ~ 44601149 (-) |
gria4b | LOC106567580 | other | upstream | 1187998 | 45133844 ~ 45296904 (-) |
G1078323 | LOC106567565 | other | upstream | 2256750 | 46202604 ~ 46206088 (-) |
G1078783 | NA | other | upstream | 2870589 | 46816443 ~ 46817065 (-) |