LOC110537647 (LOC106567631)


Basic Information

Item Value
gene id LOC110537647
gene name LOC106567631
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 44106634 ~ 44109916 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021623847.2
GCACTCAATCGGTCACACGTTCAAGCTAGCCAATAATGAGCAAGTTCCCTCTTTTGTCGTGTTGGTATCATGCGTAGAAGCACTGGGCACAGAACATTGCATGAATCACGTAGTTAGTTAGCTAAGTAATTTTTCTTAAAACGTTGAATGAGTGTGAGCTGGCCAGCTATCGAGGAGATGTTCCGACTTAAACTACAGCTTCCAGAATGCAACCGCAATGCAGCGTAGGTGCGTATATCCGGTGTCTTAAACACATTATACTTCCGCCCAGACAGACCGACACAGGCAGCCCGAAAAGGAAAACGTAGCTAACTTTTAAAAGCACCAATCAACAAGAGCTTTTTGAGCATAGTTTCATATTTTACAACAAAATCAGGACATGTTTCTCGACTTGACTGAATATTGACGAAGCCGCTAAAAGCAAAGACAAACGCGTTGGCCGCTCAAGAAAGTTTGTGTGAGGGCCTGTAAACAACATGTCCTCCGCCTCGCAGGCATCCTCTAGACGGCAATGGTGCTACCTCTGCGATCTGCCCAAGATGCCCTGGGCCATGCTCTGGGAATTCAGCGAAGCTGTTTGCCGGGGATGCGTGAACTACGACGGGGCGGACAGAATCGAACTCCTAATTGAGACGGCCAGACAGTTGAAGAGTAGCCACGGTGTTTTGGATGGAAGGTCCCCGGGCCCTCAGCAAGGCAAACCCAGCTCAGGTGGACcgatggaaggagggaggcagCATGCAGAACGTttagacagggggaggggagagtatgGCGTTTCACCCCGCCTCCCCAATGGTCTGCACAGAGCTGAAGATGTGAGTATGTCAGAGGGGAGCAGACAGAGCCCCAACACTAGAAGGGCTATGGCTGGGGCCGCACCTGCTCTACATGGGACCATACCTCATGCTTTGATAGCCCAGGGGTTAGTGGGGGCCCCTCACGGCTTGTTGGCCCCTGTTTCAGGCACCAGAGCTGGGGGCCAGCAGATGGCTAGTTCCTCTGGCCATATAATGGGTGGTGATGGAAGGCGCCAGGTAATGTCAGCCATGTCGCTGGGGGCTGGTGCCTCCACTCTTGTGGGTCTGGAGGCAGGCTGGAGGAATGGTGAGGTCATGGCTGAGCTGGCAGAGAGCGCCAGGAGCCGGGCAGAGGGCTGGCCCAACCGCCCCAGAGCAGTACGAGACGTCCTGGTGACCCTCTGCGGCTGTGCCCCCTTCAGTGTGCGCTTCAGGAAAGACCACAACCTGGTGGGGCGCATTCTCGCTTTCGAAGCCGGGACCGGGCCTGAGTTTGAGCTGAAGGTGTTTGTGGAATACCCCAGCGGCTCTGGAATAGTCTTCTCGGGCATCCCAGAGCTTGTCAGGCAGATGTTTCGTGACTCAAACAAAGACGCGGGCAAAGCAGTGAACTCAGGGCTGCGTTACGTGGAATATGAGAGGCGACAGGGCGCTGGGGACTGGCGTGCGCTCACGGAGCTCCTTAGTGACGGTGTACGCTCGTTTAAGGAGCCACCGATGCCCGAGATCCTCCCACAGCCGTACACAGATGCCGGCATGCCCATGGCGCCCGCCGGCCGCTCTGCACCTACCAAGGGTGCTGCACGGCGACGCAAAGCATCACCAAGCTCTGAAAAcggagagagtgatggaaggcCCATGGGGGATCACCCAGCCAGAGAGCCCTGGTCTCGAGGTGCATATCCAGGCATGGAGCCCCTAGGCTCAGGCATGACCAACCCCCAGGACGGCCTGCCCCGCTCTCACAGCCAGCCCTCGCCCATCTCAGCGCTCATGGGAGTGGCCGACAGCCTAAGCTCAAGCCAGATGTCCCGAGACGGCCCCGGCTTGTCCTCAGCCCATTCCTCTGCAGCTGGCCGCCCAACCAGCGGCAGTCCCTCCTCTGCCTCCACCGCAGTCTCCCAGGCAGATATGGGCCAGGGTGCCCAAGGGGGGCCGAGCACTACCAGCGCTGGGGATTCCGGGAGTGGCGCCCTGCTTTGCTGCACCCTCTGCCGAGAGCGCCTGGAAGACACTCACTTTGTCCAGTGTCCGTCTGTCCCGCACCACAAGTTCTGCTTCCCATGCACGCGTGGCTCCATCCGCAGTCAGGGCCCTGGAGGAGAGGTGTACTGCCCCAGCGGCGAGCGTTGTCCCCTGGCCGGATCCACCGTACCCTGGGCTTTCATGCAGGGAGAGATCTCCACCATCCTGGCCGGAGACGGCGACGTGACGGTGAAGAAGGAGAACGACCCCTGACCCCAATCAAGCGGCTCAAACACTTTGAAAGCGCTTCCCTGATCTATTTATCTCACCCGAAAGTTCAGATTGGCTGCAGTTTATCACGTGCACCGCAGAGGTGCAGCAAGATAACTGAATCACCACGCAACCCAGGAGGGAATAGAACCACCTTATTAAACAAGTTAGGAGGGCACCAGAACCATCAGTCCAAAAGTGGGCCACATGTCGGTCCGAGCTAGGCTCATCTGTTAGTAATAATTCAACTAGAGAAAATCACAAGTCATTCTCCATGTCCAATGAAGCAGCAGAGGCTATTCACGAGGCCTTGTTTTAAAAGCCCAGGATTGAAAGCACAGGTCTGTTCTTTAAAATGACAATCTCTCAACGTTTCATGTGTTTCTATATAAAACAATTTAGTTGCATACTGTGTCATATGTGAACGATACCAATATTGAAAGTCCATGGGTAGCCAGAAGCAGGCAATTATTTGGACAGGACAAATAGATTTTTAAAACAATGGCAAAACCAGTAGGTCCTTAAAACCAAGGTTTAAACATTTTAATCACACGTCTCTTCAATGTATGCTCATTTATTACATATTGTATGTCAGAAATGTGAATTTACTTTAAATGACTAATTTCTATTTTTGATACAATAAATTTATGTATGCGTTTATAGTAAGTGATAAGACCAAAGATGGCTTTGTGCTCTAATTTTACTGTAGCTTTGTATGCTGTACACACTGATTACTTTATCAGTCACTCTGTTTCTTAATCTACCACAGAAGTAAGCTGGTTGTTTGTCTCTAACTTTTTTgaattccctgtgtgtgtgtgtgtgtgtgtgtgtgtatatatacacacacgcttCAATGGTGAAACAACATACTCAAATGTGATCTTAATATGGGGGTCAACTAATAAATTCCAGAATAGTCATTGCTCTTGTG

Function

NR:

description
interferon regulatory factor 2-binding protein 1-like

GO: NA

KEGG:

id description
K22383 IRF2BP; interferon regulatory factor 2-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021623847.2 True 3189 mRNA 0.52 2 44106634 44109916

Neighbor

gene id symbol gene type direction distance location
LOC110537642 LOC106567634 coding downstream 160780 43920894 ~ 43945854 (-)
LOC110537640 LOC106567637 coding downstream 242678 43840844 ~ 43863956 (-)
LOC110537639 zgc:101846 coding downstream 280266 43825477 ~ 43826368 (-)
LOC110537637 LOC106567642 coding downstream 337121 43757940 ~ 43769513 (-)
LOC118937901 NA coding downstream 377782 43728759 ~ 43728852 (-)
LOC110537649 LOC106567630 coding upstream 17010 44126926 ~ 44135806 (-)
LOC110537650 LOC106567629 coding upstream 51010 44160926 ~ 44169528 (-)
LOC118937676 NA coding upstream 92265 44202181 ~ 44208228 (-)
LOC110537653 LOC106567625 coding upstream 135691 44245607 ~ 44295011 (-)
LOC110537654 LOC106567624 coding upstream 222960 44332876 ~ 44373197 (-)
G1075664 NA non-coding downstream 42681 44063514 ~ 44063953 (-)
G1075600 NA non-coding downstream 87769 43983900 ~ 44018865 (-)
G1075539 vps11 non-coding downstream 239610 43866391 ~ 43867024 (-)
G1075538 NA non-coding downstream 241564 43864869 ~ 43865070 (-)
G1075536 NA non-coding downstream 267461 43838971 ~ 43839173 (-)
G1075429 NA non-coding upstream 28049 44137965 ~ 44144948 (-)
G1075693 NA non-coding upstream 47257 44157173 ~ 44157466 (-)
G1075711 NA non-coding upstream 80761 44190677 ~ 44190878 (-)
G1075790 NA non-coding upstream 193961 44303877 ~ 44304150 (-)
G1075804 NA non-coding upstream 201479 44311395 ~ 44311923 (-)
G1075509 NA other downstream 332209 43774064 ~ 43774425 (-)
G1075399 NA other downstream 445797 43660559 ~ 43660837 (-)
G1075335 NA other downstream 542394 43563785 ~ 43564240 (-)
G1074731 NA other downstream 1392711 42704003 ~ 42713923 (-)
G1073009 NA other downstream 2044002 42045863 ~ 42062632 (-)
G1076460 NA other upstream 344732 44454648 ~ 44455270 (-)
LOC110537661 LOC101073377 other upstream 436603 44546519 ~ 44601149 (-)
gria4b LOC106567580 other upstream 1023936 45133844 ~ 45296904 (-)
G1078323 LOC106567565 other upstream 2092688 46202604 ~ 46206088 (-)
G1078783 NA other upstream 2706527 46816443 ~ 46817065 (-)

Expression


Co-expression Network