LOC110537650 (LOC106567629)


Basic Information

Item Value
gene id LOC110537650
gene name LOC106567629
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 44160926 ~ 44169528 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005034986.1
AAATCCCTCCTCCATGAAACCGAAAGAGACTCGCTCTCTGGTTGGCGGTACTTCCTTCCCTGGGTTATATGTTAAACGTGCTGTTGCCTTGTGCGAGCAGCTAGCTAGGTCAATACGGGAAAGGGGGGGAGTGTGGAAAAGTATTTGCAGCTGACTGAGGCCAACTGGGAAACGGTGTTCATTCACTAGCTGAACGGGGGAGGcgggtagctaacgttagcatagcTAGCTGCATCAATTTCAGATTTTAAGATGTCCCACTCGTCATCACGTGGCTCCTCGCGCAACACTGACTGCAAGGTCTATGTGGGTGACTTAGGCAACGGGGCTGCTAAGGGGGAGTTGGAGCGGGCGTTCAGCTACTATGGACCTCTGCGCAGCGTCTGGGTGGCCAGGAACCCTCCTGGCTTTGCCTTCGTCGAGTACGAAGATCCCAGAGATGCTGAGGATGCGACAAAGGGCATGGATGGCAAAGTGCTCTGTGGTTCTCGCATAAGAGTGGAGTTGTCAACTGGCATGTCTCGCAAGTCACGCTACGGCCGTCCCAGCCGTCGGCACTTCGACCCCAACGACCGCTGCTACCAATGTGGCGAGAGTGGCCATTATGCATATGACTGCTCTCGCTTTAGCAAGAGGGGAGGAGGCCGTCGCCGCAGCAGGTCCCGCTCACGATCTCGCTCAAGGTCCAGGGGAAGGCGTTACCGTTCACGCAGCCGAAGCAACGACCGTGACCGGCGTAATAGATCCCCATCATACTCAAAGCGCAGAAGCAGATCTGGGTCCCCCGCACGTTCCAAGTCCAGAAGTCCAGTGTGCAGATCCAGGACCCCAGTCCGTCGGTCCAGGACTCCAGTGCGCAGATCAGTAAGTCGCTCCCGTTCTCGCTCCCATTCCCGGTCAGTGTCCCACCCCAGGGCGCGGAGCGTCTCCAGATCTCGCTCCAGGTCCCGCTCGGCCACGACCAGGAAGAAGAGGTATTAAATTTGAGGATCTCCTCATACCCCTACACCAGGGTTTCCCAATCCCGGTCTTCGGGACCCCAAGCCGATCCAGGTCTCCCAGCCAGAGGAAAAGCCCCATACCCGATGCTGACTGACCATGGGGGTGAAACCGCTCCATGCCCTGCTGTTCCCCTATCCCCATTTGCCTCAGGGCTTGAAGCCATTTAACCCCTTTGTCCATGTATTTTGATTTCTTTCTCCTGTCATTTAGTTTATTTATCCCTTGGTGTTCATCCTCTGGCTTTGGCATTATTATTTCATCTGTATGTACAACAAATTCCCGAACTGTACATTTCAATGGCTCTTTTTACAGTGGTGATGTTTTTAGCTTTCTGTGCATTTTGAATTTGTTAGCCTTTGGCCAGTGTTAATGGCAATTTTTTTTCCTTTTCTGACATATTTGGCAATATATCAGCTCCAGTCGAGTGCATTGAAGTGTACTCATAGCTGTACTAAAAGCAGAATGATTTAGggttttatttcattttcaatgtaAATGGCGGTATCTTTTTAATAAAATGAATCTTTACACTAGTAAT
>XM_021623856.2
TCCCTCCTCCATGAAACCGAAAGAGACTCGCTCTCTGGTTGGCGGTACTTCCTTCCCTGGGTTATATGTTAAACGTGCTGTTGCCTTGTGCGAGCAGCTAGCTAGGTCAATACGGGAAAGGGGGGGAGTGTGGAAAAGTATTTGCAGCTGACTGAGGCCAACTGGGAAACGGTGTTCATTCACTAGCTGAACGGGGGAGGcgggtagctaacgttagcatagcTAGCTGCATCAATTTCAGATTTTAAGATGTCCCACTCGTCATCACGTGGCTCCTCGCGCAACACTGACTGCAAGGTCTATGTGGGTGACTTAGGCAACGGGGCTGCTAAGGGGGAGTTGGAGCGGGCGTTCAGCTACTATGGACCTCTGCGCAGCGTCTGGGTGGCCAGGAACCCTCCTGGCTTTGCCTTCGTCGAGTACGAAGATCCCAGAGATGCTGAGGATGCGACAAAGGGCATGGATGGCAAAGTGCTCTGTGGTTCTCGCATAAGAGTGGAGTTGTCAACTGGCATGTCTCGCAAGTCACGCTACGGCCGTCCCAGCCGTCGGCACTTCGACCCCAACGACCGCTGCTACCAATGTGGCGAGAGTGGCCATTATGCATATGACTGCTCTCGCTTTAGCAAGAGGGGAGGAGGCCGTCGCCGCAGCAGGTCCCGCTCACGATCTCGCTCAAGGTCCAGGGGAAGGCGTTACCGTTCACGCAGCCGAAGCAACGACCGTGACCGGCGTAATAGATCCCCATCATACTCAAAGCGCAGAAGCAGATCTGGGTCCCCCGCACGTTCCAAGTCCAGAAGTCCAGTGTGCAGATCCAGGACCCCAGTCCGTCGGTCCAGGACTCCAGTGCGCAGATCAGTAAGTCGCTCCCGTTCTCGCTCCCATTCCCGGTCAGTGTCCCACCCCAGGGCGCGGAGCGTCTCCAGATCTCGCTCCAGGTCCCGCTCGGCCACGACCAGGAAGAAGAGCCGATCCAGGTCTCCCAGCCAGAGGAAAAGCCCCATACCCGATGCTGACTGACCATGGGGGTGAAACCGCTCCATGCCCTGCTGTTCCCCTATCCCCATTTGCCTCAGGGCTTGAAGCCATTTAACCCCTTTGTCCATGTATTTTGATTTCTTTCTCCTGTCATTTAGTTTATTTATCCCTTGGTGTTCATCCTCTGGCTTTGGCATTATTATTTCATCTGTATGTACAACAAATTCCCGAACTGTACATTTCAATGGCTCTTTTTACAGTGGTGATGTTTTTAGCTTTCTGTGCATTTTGAATTTGTTAGCCTTTGGCCAGTGTTAATGGCAATTTTTTTTCCTTTTCTGACATATTTGGCAATATATCAGCTCCAGTCGAGTGCATTGAAGTGTACTCATAGCTGTACTAAAAGCAGAATGATTTAGggttttatttcattttcaatgtaAATGGCGGTATCTTTTTAATAAAATGAATCTTTACACTAGTAA
>XM_021623855.2
TGTTACTATTCAGGAAATCCCTCCTCCATGAAACCGAAAGAGACTCGCTCTCTGGTTGGCGGTACTTCCTTCCCTGGGTTATATGTTAAACGTGCTGTTGCCTTGTGCGAGCAGCTAGCTAGGTCAATACGGGAAAGGGGGGGAGTGTGGAAAAGTTTCAGATTTTAAGATGTCCCACTCGTCATCACGTGGCTCCTCGCGCAACACTGACTGCAAGGTCTATGTGGGTGACTTAGGCAACGGGGCTGCTAAGGGGGAGTTGGAGCGGGCGTTCAGCTACTATGGACCTCTGCGCAGCGTCTGGGTGGCCAGGAACCCTCCTGGCTTTGCCTTCGTCGAGTACGAAGATCCCAGAGATGCTGAGGATGCGACAAAGGGCATGGATGGCAAAGTGCTCTGTGGTTCTCGCATAAGAGTGGAGTTGTCAACTGGCATGTCTCGCAAGTCACGCTACGGCCGTCCCAGCCGTCGGCACTTCGACCCCAACGACCGCTGCTACCAATGTGGCGAGAGTGGCCATTATGCATATGACTGCTCTCGCTTTAGCAAGAGGGGAGGAGGCCGTCGCCGCAGCAGGTCCCGCTCACGATCTCGCTCAAGGTCCAGGGGAAGGCGTTACCGTTCACGCAGCCGAAGCAACGACCGTGACCGGCGTAATAGATCCCCATCATACTCAAAGCGCAGAAGCAGATCTGGGTCCCCCGCACGTTCCAAGTCCAGAAGTCCAGTGTGCAGATCCAGGACCCCAGTCCGTCGGTCCAGGACTCCAGTGCGCAGATCAGTAAGTCGCTCCCGTTCTCGCTCCCATTCCCGGTCAGTGTCCCACCCCAGGGCGCGGAGCGTCTCCAGATCTCGCTCCAGGTCCCGCTCGGCCACGACCAGGAAGAAGAGCCGATCCAGGTCTCCCAGCCAGAGGAAAAGCCCCATACCCGATGCTGACTGACCATGGGGGTGAAACCGCTCCATGCCCTGCTGTTCCCCTATCCCCATTTGCCTCAGGGCTTGAAGCCATTTAACCCCTTTGTCCATGTATTTTGATTTCTTTCTCCTGTCATTTAGTTTATTTATCCCTTGGTGTTCATCCTCTGGCTTTGGCATTATTATTTCATCTGTATGTACAACAAATTCCCGAACTGTACATTTCAATGGCTCTTTTTACAGTGGTGATGTTTTTAGCTTTCTGTGCATTTTGAATTTGTTAGCCTTTGGCCAGTGTTAATGGCAATTTTTTTTCCTTTTCTGACATATTTGGCAATATATCAGCTCCAGTCGAGTGCATTGAAGTGTACTCATAGCTGTACTAAAAGCAGAATGATTTAGggttttatttcattttcaatgtaAATGGCGGTATCTTTTTAATAAAATGAATCTTTACACTAGTAA

Function

NR:

description
PREDICTED: serine/arginine-rich splicing factor 7-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005034986.1 False 1540 mRNA 0.52 9 44160926 44169514
XM_021623856.2 False 1466 mRNA 0.52 9 44160927 44169511
XM_021623855.2 True 1386 mRNA 0.52 8 44160927 44169528
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110537649 LOC106567630 coding downstream 25120 44126926 ~ 44135806 (-)
LOC110537647 LOC106567631 coding downstream 51010 44106634 ~ 44109916 (-)
LOC110537642 LOC106567634 coding downstream 215072 43920894 ~ 43945854 (-)
LOC110537640 LOC106567637 coding downstream 296970 43840844 ~ 43863956 (-)
LOC110537639 zgc:101846 coding downstream 334558 43825477 ~ 43826368 (-)
LOC118937676 NA coding upstream 32653 44202181 ~ 44208228 (-)
LOC110537653 LOC106567625 coding upstream 76079 44245607 ~ 44295011 (-)
LOC110537654 LOC106567624 coding upstream 163348 44332876 ~ 44373197 (-)
LOC110537655 LOC106567623 coding upstream 208415 44377943 ~ 44388854 (-)
LOC110538901 LOC106603699 coding upstream 221504 44391032 ~ 44397968 (-)
G1075693 NA non-coding downstream 3460 44157173 ~ 44157466 (-)
G1075429 NA non-coding downstream 15978 44137965 ~ 44144948 (-)
G1075664 NA non-coding downstream 96973 44063514 ~ 44063953 (-)
G1075600 NA non-coding downstream 142061 43983900 ~ 44018865 (-)
G1075539 vps11 non-coding downstream 293902 43866391 ~ 43867024 (-)
G1075711 NA non-coding upstream 21149 44190677 ~ 44190878 (-)
G1075790 NA non-coding upstream 134349 44303877 ~ 44304150 (-)
G1075804 NA non-coding upstream 141867 44311395 ~ 44311923 (-)
G1075825 NA non-coding upstream 157062 44326590 ~ 44326906 (-)
G1075939 NA non-coding upstream 240245 44409773 ~ 44410004 (-)
G1075509 NA other downstream 386501 43774064 ~ 43774425 (-)
G1075399 NA other downstream 500089 43660559 ~ 43660837 (-)
G1075335 NA other downstream 596686 43563785 ~ 43564240 (-)
G1074731 NA other downstream 1447003 42704003 ~ 42713923 (-)
G1073009 NA other downstream 2098294 42045863 ~ 42062632 (-)
G1076460 NA other upstream 285120 44454648 ~ 44455270 (-)
LOC110537661 LOC101073377 other upstream 376991 44546519 ~ 44601149 (-)
gria4b LOC106567580 other upstream 964324 45133844 ~ 45296904 (-)
G1078323 LOC106567565 other upstream 2033076 46202604 ~ 46206088 (-)
G1078783 NA other upstream 2646915 46816443 ~ 46817065 (-)

Expression

LOC110537650(LOC106567629) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 250.
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LOC110537650(LOC106567629) Expression in each Bioproject

Bar chart with 21 bars.
LOC110537650(LOC106567629) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1500.
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Co-expression Network