LOC110537654 (LOC106567624)


Basic Information

Item Value
gene id LOC110537654
gene name LOC106567624
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 44332876 ~ 44373197 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021623862.2
CTCAGGAAAACGCATCATCTACAGCTACAATACAGCCAGAGTCAGGAAGCCGGGTGAGTACAGTGCTCTGCTGAGCCACAGAGGAgatacacacacaatctctcacacacacaaacacactctgccACAAATACATACAGCACACATCGGGATGACATTCCACTGAGACACTGTGCACTAACTACACAAGTATTTGATTCTTGAGCACAGCATTTTAATGCCAATCCTTAAGAACCTCCCGGGGAGGATCAAGAGTAACCATGGGAATGGTGAGCTCATCCTGCCCAGGTTAAACTTGGACCTGAACCCCTTCGAGGAGGTGGAccttgaggaggagaggaacgagGGTGAGCCCCCCAATTTGGGGGTATGCGGGGGAAAAATCTTCCAGAGCAGGTCGCCACAtgatggggaagaggaggagaatgaggtgaACGCGGAGAGGCATGGCCCTGAGGCCcctaaaggaggaggagggaggcccCTGAGGGGAACCCTTGAGCGGCTGTGCGGCTCTTCGCCCCTGAAGACCCTGGGGAAGCTGGGGAAGGGGCTGCGTATGTCGGGGTGCAGCGTATGGGGGACATTCCCGTCCCAGCGATGCCCCACAGACCCCCACTCACCCAAGcctgagaaagagaagaggaagggccTCCGCAGGAGCTCAGAGGAGATCATGACCCTGCTCCGATTTGCAGGGCGGAGGAAGCAGACGCAACGCAGAGAGAGCCTGCCCTGTGGTAACCTGAGCGCCGACAGCGAGGCTGAGTCCTGCCGCCGGCCCTCCTTCCTCAGGATGGTCAGCCTTGGCAAGCTGAAGAGGGAGTCCCTGTCGGACCACAACTCCCAGGAGGctgaggaggagctggaggaggagccACTAGTGGTCAAACCCAGGGAACCTCTCTCAGtacTGGAGATCCTACAGCTGGTCAACCAGAGGGACCTCCTcctggcagacacacacatccaGGAGCTGGAGCGTGAGTGCGAGCTGATGGCCCTCCTGCCCCACCCCCCCACACCCTCATTCACGCCTCCCGGAGTAAACCCTCTCGGGTCCTTCGATGACCCCTCCAGCCCCAATGTGTCAAGAGACGCCAGCCTTCGCAAGGCCAAGGATGTGGAGTTGCTGTACGAGGCCCTGCAGAAGGAGATGTGGGATGTGGTGAGGGAGTCACTCCGACAGCCAACAGCCGGGCCCAACCTGGGGCTGGTGGTGCTGGTCATCCAGCAGGAGGAGCAGGCCGACACCGCCCAGGCACAGAAAGAGGAGACCCAGCCCCTGAGGGAGGGCCTCCAGCCCCATCCTAGCCAGCGGCCCCGTCAGCTCAAGCTGAAATGGCGGCAGGCAGTGGGGGAGGCGTCTGACTGGAGCCTGCCCCAGCAGGTGAGAACTCCGGCTGGGCAGCTAGCCTCGTACCTGGAGAGGCTGAGGGGCCGCATGGTGGACGACCTGGACGCGGCGAGGAGGAACGTTGTGTCGGTCTACCCGGAGGAGTTCCAGGCCTTCCAGGTGTACGTGCAGAGCTACCACCGGGCAGTGGCCCGACGCCTGAACATCATCACCAGCTCCCAGCTGCAGATCACTGATGTCTACTCCCTGCTGGACTGGTTCTATAACATCTATAACAGGGATGTCCTGGGCACCGTTGGCATGAAAACCCCCATTAACTACTCCCCACTGGAACCCCTACTGCACCAAGATACAGTGGACCGACTGGAACAGGACTGCCTGAACACAGTCAGGGAGAAGGTGACCACAGAGCTCACTCAGGTtctggatgaggaggagaggcggtgGGCCCAAATGCTGCACATAGAGGAGTACCAATCCAATCTGGCCCGCTCCATCATCCAGAGACTGACGTTGGACCTAGACAGATCCACAGCTGTAAGCTCGTTTCTGGGGGCCAGGGTGGCCCGCTGCAGTCTTAATGGGCTGTCTGACttcctgtacagTTTCCAGAGGAAAGTGGAGATGTTCCATGAGACCCAGGCTGAGTTTGGGGACCGGGGTGATGGATACATCTCCAGGACCATCGCTCTGGTCAACTGTTGTCCTCCTCTAAGGTCCTTTGTACAGCGCTGCAGGCAGTGTGACCCACAGGGCAGTGAGGAGTCCACACAGAGAGCTAACTCCTCCCTCAATAGGATCATTAACCAATCAGTGAGGGTTCTGACGGAAAAACTATTTGAGCACATCAGGCCGTTCTGTGACAAGCTGGTGAAGAGAAAGTGGCTAAACAACACTGAGGCATTTGAGGCCATCGAAGCAAGCATCAAGCAACACTTTAAGAAGTTCAGAAGAATGGACTGCCCACCTTATCAGATACTGGTGGGGGAGGTACACAGGCGGATCCTGGTGGAGTATGTGCGTGCGATCATGCGAGGACGGGTCATCTGCACATCATCGAAGATGAGAAAGAGGATGGCGTTCCGACTTCAGGACGAGGCCAAACAGCTCAAAGGACTCTTCAAAGACCTGGAGTCAGGATCCTCTTGGCTGGACAGTGTCCTCGCTCACCTAGCTGACATCATTCTACTGGAGGACACTCCGTCCATCCAGATGGAGGTTGCTGTTCTGGTGAAGGAGTTTCCAGACATACGGAAGAAGCACGTCTCCACCCTGCTGAACGTGCGAGGCATGATGCGTCAGGCGGAGCGTGAGGAGATCCTGAACATAGTCCGAGACTTCGAGAGCAGTGGCAGCTCTGCCCTGCTATGTCGGGATCACGCCCTCTTCTCAGACATCCCTGTCACCTCCGAGGTGCACTGCATCAACCTGGGCCTCATCCGCGTCGCCATGACCCTCGCCAACTGGTTCTCAGAGGCCCGGCCTCGACGACACCGCAAGAAAAACCCCAGGAACAGAACCACGCTGCCACTGGAACGCCTGACCGAGGAGAAGGATATGGATGATGATTGACTTCAAGGAAAATTATATGGAGCACATTGGTAGAACAGAGGCTCACCCGTAACACTCATAATTCTGTATCAATGTGTTCATTTGTATGACTAACCAATACTGATGGTGCGTAATGTAATTGTTTGGCTTTCTGCTGTAAATAACATAGGTAGAGGTTTGTTGTTGACAACAATTTGATGAGCACTCAATCCTAATATCTGTCATATTATGTGCTGCGACTACTGTGCTGCGACTACTACTGTGGGGCCGAATACTGTGAAACATACGACTAAAAAGAAATTCAAGTCTCCAAAGAAACGTGAAACTATCAAATGCCGTTTTTAATTCATCTGTAAATTGACTTATCACTCATTTACAGACATTTCAAAGGAATGTGATCAAAAATGACTTGACCTCAGGTACAAGTTCATCTACTGCACCTCGAGCTCAGACATTTCTTCATGTTTGGAATGAGAACCAGTACACAGTTGCATTGCTTGGATTGATTTTAAGGCATACTTGAAATACAGATTTCGTATCATCTATGAATGTATCACTTCAATGGTTTTGTAAACCTTattgggtaacactttacattaaggcAGTGTTTCTTAATGATGGTCCTGGGGACACAAAAGGGTGTACATTTTTGTTCTTGCGCTAGCacttgattcaactaatcaactcatcatcaagcttttcgatgtgaatcaggtgtgttagtgttggGGCCAAAACAGACATGTTCACCCCTttaggtccccaggaccaggatggagaaATACTGTATTAAGGTATACTTTATACATAAATAAGTAGTTAATAAACTGAAAATTATTCATTTAACGATAACTTAGAGCTAATTAATGTGTTATAACTGTTTAACTTTTATAACTAACAAAGGGGGTACCTAGTCAACACACCTGAATGGATTCCACCGAattgtgtcttccacatttaacccaacccctctgtatCAGAGAACTCTGAACTTAAGAATAATTTTAAGTACACCTTAATGTAAAGTTTTACCTGTTaaggtaaagtgttaccaaaactATTCAAACTGTTGTCATCATATTCCAACTAATTATTGTCCAGTTGAATGCTTTGTAGATTCCAATGCAATGTATGACCTATGGATATATATGTTGTTCAATATCTCTTTATTCTATGGGTAATttaacctaatcctaaccttgtCTTGGATACTGCACAGCttttctctgctctttctctaACTTTGTATTGTTGTTTGATACACATATgtatggaaatatatatatatatatatatatatatatatatatatatatatatgacatggTTTGtaaatgttttgaacactcaacTGTGAATGAATATGATCTATTATGTTGCCAAAGAGTAAATAAACCCCCATTGATTGGGTGGATTGAACTAA

Function

NR:

description
exocyst complex component 3-like

GO:

id name namespace
GO:0006887 exocytosis biological_process
GO:0000145 exocyst cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021623862.2 True 4331 mRNA 0.50 13 44332876 44373197

Neighbor

gene id symbol gene type direction distance location
LOC110537653 LOC106567625 coding downstream 37865 44245607 ~ 44295011 (-)
LOC118937676 NA coding downstream 124648 44202181 ~ 44208228 (-)
LOC110537650 LOC106567629 coding downstream 163348 44160926 ~ 44169528 (-)
LOC110537649 LOC106567630 coding downstream 197070 44126926 ~ 44135806 (-)
LOC110537647 LOC106567631 coding downstream 222960 44106634 ~ 44109916 (-)
LOC110537655 LOC106567623 coding upstream 4746 44377943 ~ 44388854 (-)
LOC110538901 LOC106603699 coding upstream 17835 44391032 ~ 44397968 (-)
LOC110537656 capns1 coding upstream 56873 44430070 ~ 44439278 (-)
alkbh6 alkbh6 coding upstream 83779 44456976 ~ 44473459 (-)
nova1 LOC106567594 coding upstream 106646 44479843 ~ 44519222 (-)
G1075825 NA non-coding downstream 5970 44326590 ~ 44326906 (-)
G1075804 NA non-coding downstream 20953 44311395 ~ 44311923 (-)
G1075790 NA non-coding downstream 28726 44303877 ~ 44304150 (-)
G1075711 NA non-coding downstream 141998 44190677 ~ 44190878 (-)
G1075693 NA non-coding downstream 175410 44157173 ~ 44157466 (-)
G1075939 NA non-coding upstream 36576 44409773 ~ 44410004 (-)
G1075944 NA non-coding upstream 43181 44416378 ~ 44416827 (-)
G1075945 NA non-coding upstream 44229 44417426 ~ 44417628 (-)
G1075950 NA non-coding upstream 52900 44426097 ~ 44426312 (-)
G1075936 NA non-coding upstream 55869 44429066 ~ 44429678 (-)
G1075509 NA other downstream 558451 43774064 ~ 43774425 (-)
G1075399 NA other downstream 672039 43660559 ~ 43660837 (-)
G1075335 NA other downstream 768636 43563785 ~ 43564240 (-)
G1074731 NA other downstream 1618953 42704003 ~ 42713923 (-)
G1073009 NA other downstream 2270244 42045863 ~ 42062632 (-)
G1076460 NA other upstream 81451 44454648 ~ 44455270 (-)
LOC110537661 LOC101073377 other upstream 173322 44546519 ~ 44601149 (-)
gria4b LOC106567580 other upstream 760655 45133844 ~ 45296904 (-)
G1078323 LOC106567565 other upstream 1829407 46202604 ~ 46206088 (-)
G1078783 NA other upstream 2443246 46816443 ~ 46817065 (-)

Expression


Co-expression Network