LOC110537661 (LOC101073377)


Basic Information

Item Value
gene id LOC110537661
gene name LOC101073377
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 44546519 ~ 44601149 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021623872.2
AGACTGCCTCTTTGGCATAGCACACGCTGTTGGAAAAGCAGACAGATAAAACTGTGGTTACTACCATATTCTTTCTTTAGGGTATTTAGGGTCTTTAGGGTATTTCTTATTATATTACTTCACATTGATAGACAATTCACTAGAAAGCAATGCAAATGTTCCTTTCAGGGAAAGATTCGATCATCAGAAAACGGTGTTTACAAAAATGAAACACGTTGCATTATGGGAGTAGAATGATTGACACGGCAGCCATTTTCCTGCTGGACGCCGTGTTCCCACCATTGTGTGAGAGATAGTAAATACTGAAACTGCTAGACAACCATAACATTTATTTCCTTGCGAAAAAACATTTATATTCACGTCAGTATAACTAACTCGTCATGGCTCGTACCAAGCAGACCGCCCGTAAATCCACTGGAGGAAAGGCTCCACGTAAGCAGCTGGCCACCAAGGCTGCCCGCAAGAGTGCGCCGTCCACCGGTGGGGTCAAGAAGCCCCATCGTTACAGGCCCGGCACTGTGGCGCTCCGTGAGATCCGTCGGTACCagaagtccactgagctgcttATCCGCAAGCTGCCCTTCCAGCGCCTGGTGAGGGAGATTGCTCAGGACTTCAAGACCGACCTGCGCTTTCAGAGCGCCGCCATCGGAGCACTTCAGGAGGCGAGCGAGGCATACCTGGTGGGTCTGTTTGAGGACACCAACCTGTGCGCCATCCATGCCAAGCGTGTCACCATCATGCCCAAAGACATCCAGCTGGCACGCCGCATCCGTGGAGAGCGTGCTTAGATGCTGTCCTTTCTTTTCTCCAATGTTTCAGCTCTATTCTCTTTTTTTCTTTACCTCTAACTGTCCTCACCTTCACTCTCTCGTTCCCCCcgcccttccatctctctcctcagccccCTCTCGCTGTATTCTTATTGGTAGACTTTAGAGTAACAGTGATTATGATGAGATAGAAATGTGTTTGAAAAGTCTCGTCTCTCATAGTTTTTGTCTTCAGCAGATGCTATAGGGTATCTTTTTTGTGCATGTAGTAGGAGTCGCTGatcagacaaatacacacacatgcttaGAACCATGCATTCTCAGCTCTCCTACAACAAAACCACTCTGATTGACCAGGGGAGATatcaggcatgtgtgtgtgttttgcgacAGGCGTCGGGTTTCtgcaacactcacacacacacacacacacgggggcaGACCATAGGGGTGTCGCCCGGGGCTAGTCTGCTTAAGGGGAGTGGCAACTTCCACAGCAGGGTGCTACTTAAACTAACCCCAGGGCCTCTGCCCTGTCTGCCCACCTCCCATTCTCACCCACTTCCTGCTCCATCCTCTACACCTGATCTGGGGTACTCTCCCCATGCACCCTCCTGCCCACCACAGCCAGACCCCTTCCCCGCCTACTCCCCTGATCCCTATCCAGCCCTTCCACACTCTCCTGCCCCTCTAAATTGATGGTTGGGGGGTGGTTGTCTGTGGAGCGCCATTAGTCTGTTGGTGTGAGAGCTCTGATCAGCCAAGCAAATTGTATTCAAAGGCAAACGAGTATCTCTTCTTGGCTACTtaattttttgtattattattactatcatTGTGGATATGGtgtcattaaaaaatatatatataattcataCATTTTCTTTTTACAACTGCCAGAGATGTCAAAATAGGAATAAGGAGAAAAAAAGTGATTGATGTTTTCAGACATGGGAAACTCTTGTTTTTACAGAATTATTTTTAAACCAATCAGGAAGAGCTCTGTTTCATAAGCGAGCTCCTGTTCCAATGGCAGCCACACGGGGCCGATATATACCAGCCGCCTTCCTATTTCGTTTCTCACTATCAGTTTGTCATTATCCATGATGCTACTCTCAATCTCTTTACCTGATCTCTGTCTCTTAAGATGAGCATTAGAGTTGTCACATCTGTATAAATTGACTTTGTAGTAGCAAGAGTTACTCTGCACGTTTGGGTTCTTTTCTGTTGCTCTCACGTCTCTAGCTCTGACGATAGAATCTGTCCTTTTCCTCGAAATTTGTGATACACAATATAACCTCATgtttgttttcttattttttcttaTTCCTCCAGATTTTCAGATGTTTAAATAAGCTGATGTTTGTATTTTCCAAATTTCTCATATTATGGTGGTAATAAATAGATATCCAAATGGG
>TU1225480
TGGACGCCGTGTTCCCACCATTGTGTGAGAGATAGTAAATACTGAAACTGCTAGACAACCATAACATTTATTTCCTTGCGAAAAAACATTTATATTCACGTCAGTATAACTAACTCGTCATGGCTCGTACCAAGCAGACCGCCCGTAAATCCACTGGAGGAAAGGCTCCACGTAAGCAGCTGGCCACCAAGGCTGCCCGCAAGAGTGCGCCGTCCACCGGTGGGGTCAAGAAGCCCCATCGTTACAGGCCCGGCACTGTGGCGCTCCGTGAGATCCGTCGGTACCagaagtccactgagctgcttATCCGCAAGCTGCCCTTCCAGCGCCTGGTGAGGGAGATTGCTCAGGACTTCAAGACCGACCTGCGCTTTCAGAGCGCCGCCATCGGAGCACTTCAGGAGGCGAGCGAGGCATACCTGGTGGGTCTGTTTGAGGACACCAACCTGTGCGCCATCCATGCCAAGCGTGTCACCATCATGCCCAAAGACATCCAGCTGGCACGCCGCATCCGTGGAGAGCGTGCTTAGATGCTGTCCTTTCTTTTCTCCAATGTTTCAGCTCTATTCTCTTTTTTTCTTTACCTCTAACTGTCCTCACCTTCACTCTCTCGTTCCCCCcgcccttccatctctctcctcagccccCTCTCGCTGTATTCTTATTGGTAGACTTTAGAGTAACAGTGATTATGATGAGATAGAAATGTGTTTGAAAAGTCTCGTCTCTCATAGTTTTTGTCTTCAGCAGATGCTATAGGGTATCTTTTTTGTGCATGTAGTAGGAGTCGCTGatcagacaaatacacacacatgcttaGAACCATGCATTCTCAGCTCTCCTACAACAAAACCACTCTGATTGACCAGGGGAGATatcaggcatgtgtgtgtgttttgcgacAGGCGTCGGGTTTCtgcaacactcacacacacacacacacacgggggcaGACCATAGGGGTGTCGCCCGGGGCTAGTCTGCTTAAGGGGAGTGGCAACTTCCACAGCAGGGTGCTACTTAAACTAACCCCAGGGCCTCTGCCCTGTCTGCCCACCTCCCATTCTCACCCACTTCCTGCTCCATCCTCTACACCTGATCTGGGGTACTCTCCCCATGCACCCTCCTGCCCACCACAGCCAGACCCCTTCCCCGCCTACTCCCCTGATCCCTATCCAGCCCTTCCACACTCTCCTGCCCCTCTAAATTGATGGTTGGGGGGTGGTTGTCTGTGGAGCGCCATTAGTCTGTTGGTGTGAGAGCTCTGATCAGCCAAGCAAATTGTATTCAAAGGCAAACGAGTATCTCTTCTTGGCTACTtaattttttgtattattattactatcatTGTGGATATGGtgtcattaaaaaatatatatataattcataCATTTTCTTTTTACAACTGCCAGAGATGTCAAAATAGGAATAAGGAGAAAAAAAGTGATTGATGTTTTCAGACATGGGAAACTCTTGTTTTTACAGAATTATTTTTAAACCAATCAGGAAGAGCTCTGTTTCATAAGCGAGCTCCTGTTCCAATGGCAGCCACACGGGGCCGATATATACCAGCCGCCTTCCTATTTCGTTTCTCACTATCAGTTTGTCATTATCCATGATGCTACTCTCAATCTCTTTACCTGATCTCTGTCTCTTAAGATGAGCATTAGAGTTGTCACATCTGTATAAATTGACTTTGTAGTAGCAAGAGTTACTCTGCACGTTTGGGTTCTTTTCTGTTGCTCTCACGTCTCTAGCTCTGACGATAGAATCTGTCCTTTTCCTCGAAATTTGTGATACACAATATAACCTCATgtttgttttcttattttttcttaTTCCTCCAGATTTTCAGATGTTTAAATAAGCTGATGTTTGTATTTTCCAAATTTCTCATATTATGGTGGTAATAAATAGATATCCAAATGGGaaaaaaacaaaaaaaaaataggttTGAAGTTGTTTAGCAAATAAAAATAAGGCATTGCGCTTCACATTGTTTTTTAACCCCCCAGCATTAAGATAAACTACAGACAAAGACAaaataacaaagataatataaaaGTATAAACTTTCGGATGAGTCAAAAACGTAGGAGCAGTGAATATAAGCTATAAGGAACCGAGA
>TU1225479
TGGACGCCGTGTTCCCACCATTGTGTGAGAGATAGTAAATACTGAAACTGCTAGACAACCATAACATTTATTTCCTTGCGAAAAAACATTTATATTCACGTCAGTATAACTAACTCGTCATGGCTCGTACCAAGCAGACCGCCCGTAAATCCACTGGAGGAAAGGCTCCACGTAAGCAGCTGGCCACCAAGGCTGCCCGCAAGAGTGCGCCGTCCACCGGTGGGGTCAAGAAGCCCCATCGTTACAGGCCCGGCACTGTGGCGCTCCGTGAGATCCGTCGGTACCagaagtccactgagctgcttATCCGCAAGCTGCCCTTCCAGCGCCTGGTGAGGGAGATTGCTCAGGACTTCAAGACCGACCTGCGCTTTCAGAGCGCCGCCATCGGAGCACTTCAGGAGGCGAGCGAGGCATACCTGGTGGGTCTGTTTGAGGACACCAACCTGTGCGCCATCCATGCCAAGCGTGTCACCATCATGCCCAAAGACATCCAGCTGGCACGCCGCATCCGTGGAGAGCGTGCTTAGATGCTGTCCTTTCTTTTCTCCAATGTTTCAGCTCTATTCTCTTTTTTTCTTTACCTCTAACTGTCCTCACCTTCACTCTCTCGTTCCCCCcgcccttccatctctctcctcagccccCTCTCGCTGTATTCTTATTGGTAGACTTTAGAGTAACAGTGATTATGATGAGATAGAAATGTGTTTGAAAAGTCTCGTCTCTCATAGTTTTTGTCTTCAGCAGATGCTATAGGGTATCTTTTTTGTGCATGTAGTAGGAGTCGCTGatcagacaaatacacacacatgcttaGAACCATGCATTCTCAGCTCTCCTACAACAAAACCACTCTGATTGACCAGGGGAGATatcaggcatgtgtgtgtgttttgcgacAGGCGTCGGGTTTCtgcaacactcacacacacacacacacacgggggcaGACCATAGGGGTGTCGCCCGGGGCTAGTCTGCTTAAGGGGAGTGGCAACTTCCACAGCAGGGTGCTACTTAAACTAACCCCAGGGCCTCTGCCCTGTCTGCCCACCTCCCATTCTCACCCACTTCCTGCTCCATCCTCTACACCTGATCTGGGGTACTCTCCCCATGCACCCTCCTGCCCACCACAGCCAGACCCCTTCCCCGCCTACTCCCCTGATCCCTATCCAGCCCTTCCACACTCTCCTGCCCCTCTAAATTGATGGTTGGGGGGTGGTTGTCTGTGGAGCGCCATTAGTCTGTTGGTGTGAGAGCTCTGATCAGCCAAGCAAATTGTATTCAAAGGCAAACGAGTATCTCTTCTTGGCTACTtaattttttgtattattattactatcatTGTGGATATGGtgtcattaaaaaatatatatataattcataCATTTTCTTTTTACAACTGCCAGAGATGTCAAAATAGGAATAAGGAGAAAAAAAGTGATTGATGTTTTCAGACATGGGAAACTCTTGTTTTTACAGAATTATTTTTAAACCAATCAGGAAGAGCTCTGTTTCATAAGCGAGCTCCTGTTCCAATGGCAGCCACACGGGGCCGATATATACCAGCCGCCTTCCTATTTCGTTTCTCACTATCAGTTTGTCATTATCCATGATGCTACTCTCAATCTCTTTACCTGATCTCTGTCTCTTAAGATGAGCATTAGAGTTGTCACATCTGTATAAATTGACTTTGTAGTAGCAAGAGTTACTCTGCACGTTTGGGTTCTTTTCTGTTGCTCTCACGTCTCTAGCTCTGACGATAGAATCTGTCCTTTTCCTCGAAATTTGTGATACACAATATAACCTCATgtttgttttcttattttttcttaTTCCTCCAGATTTTCAGATGTTTAAATAAGCTGATGTTTGTATTTTCCAAATTTCTCATATTATGGTGGTAATAAATAGATATCCAAATGGGTAATAAAGAGAAGTATAGACAActtggacagacagacaagaaGACAGAATGGCATGTAggtataaagacagacagacagagaggtgtaGAGATGTACAGAC

Function

NR:

description
PREDICTED: histone H3.3 isoform X1

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0006334 nucleosome assembly biological_process
GO:0006629 lipid metabolic process biological_process
GO:1902340 negative regulation of chromosome condensation biological_process
GO:0006997 nucleus organization biological_process
GO:0007596 blood coagulation biological_process
GO:0009725 response to hormone biological_process
GO:0001649 osteoblast differentiation biological_process
GO:0007420 brain development biological_process
GO:0007140 male meiotic nuclear division biological_process
GO:0008360 regulation of cell shape biological_process
GO:0007155 cell adhesion biological_process
GO:0090230 regulation of centromere complex assembly biological_process
GO:0000786 nucleosome cellular_component
GO:0001740 Barr body cellular_component
GO:0005576 extracellular region cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0005700 polytene chromosome cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003677 DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021623872.2 False 2191 mRNA 0.46 4 44595534 44601149
TU1225480 False 2127 TUCP 0.45 5 44546519 44600888
TU1225479 True 2031 TUCP 0.46 5 44580758 44600888

Neighbor

gene id symbol gene type direction distance location
LOC118937885 NA coding downstream 26394 44564224 ~ 44569140 (-)
nova1 LOC106567594 coding downstream 76312 44479843 ~ 44519222 (-)
alkbh6 alkbh6 coding downstream 122075 44456976 ~ 44473459 (-)
LOC110537656 capns1 coding downstream 156256 44430070 ~ 44439278 (-)
LOC110538901 LOC106603699 coding downstream 197566 44391032 ~ 44397968 (-)
plekhb1 plekhb1 coding upstream 6013 44607162 ~ 44610310 (-)
LOC110537668 LOC106603713 coding upstream 282644 44883793 ~ 44965601 (-)
LOC110537669 LOC106567584 coding upstream 370849 44971998 ~ 45021139 (-)
LOC118937886 NA coding upstream 421675 45022824 ~ 45026146 (-)
LOC110537671 LOC106567583 coding upstream 428940 45030089 ~ 45072800 (-)
G1076534 NA non-coding downstream 10992 44583390 ~ 44584542 (-)
G1076519 NA non-coding downstream 41251 44552944 ~ 44554283 (-)
G1076464 NA non-coding downstream 117375 44477370 ~ 44478159 (-)
G1076465 NA non-coding downstream 118289 44476294 ~ 44477245 (-)
G1076475 NA non-coding downstream 122344 44472842 ~ 44473190 (-)
G1076549 NA non-coding upstream 1167 44602316 ~ 44603294 (-)
G1076588 NA non-coding upstream 91713 44692862 ~ 44697846 (-)
G1076610 NA non-coding upstream 103080 44704229 ~ 44733447 (-)
G1076648 LOC106567588 non-coding upstream 159693 44760842 ~ 44767448 (-)
G1076674 NA non-coding upstream 214323 44815472 ~ 44820392 (-)
G1076460 NA other downstream 140264 44454648 ~ 44455270 (-)
G1075509 NA other downstream 821109 43774064 ~ 43774425 (-)
G1075399 NA other downstream 934697 43660559 ~ 43660837 (-)
G1075335 NA other downstream 1031294 43563785 ~ 43564240 (-)
G1074731 NA other downstream 1881611 42704003 ~ 42713923 (-)
gria4b LOC106567580 other upstream 532703 45133844 ~ 45296904 (-)
G1078323 LOC106567565 other upstream 1601455 46202604 ~ 46206088 (-)
G1078783 NA other upstream 2215294 46816443 ~ 46817065 (-)
LOC110537706 LOC106567549 other upstream 3313402 47911648 ~ 47942039 (-)
G1081055 NA other upstream 3817272 48418421 ~ 48418884 (-)
LOC110537655 LOC106567623 coding downstream 157665 44377943 ~ 44388854 (-)
G1076474 NA non-coding downstream 74484 44471669 ~ 44472035 (-)
G1076458 NA non-coding downstream 93835 44452484 ~ 44452684 (-)

Expression


Co-expression Network