LOC110538902 (LOC106567602)


Basic Information

Item Value
gene id LOC110538902
gene name LOC106567602
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 45732752 ~ 45815120 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939508.1
attttatattttattgtaATTGCCATTAAGGTCAATGGGTGAAAAGTAGGTGAAAAACATAGTTGGGATATCAGGGTGTCTacaacagaggacatttcttgatAAGCTCTTATGTCAAGGTCACACCCCAACACGTGATATTATTGAAAACGCCAGAGTGTCCTCTCAAAGGGACAACAGGACAGTGGCTCATATGGCCTCAGAGATATGGAACAAAGACGGATGTTCACTAGGGATGACAAAAATGAATTGCTGTGTCTCTAAAATAATTTAGCAAATATTTGTCCTAATTATTCATTTACAAAGTATACCGGACGTGACTTTTATTCTgaaggaataaaaaaaaaaaatccgtgACCCGGAAGTACTTATTTATTCTAGCCCACTTCACAGCGGTCTGAATAACAATAACAACCATTCGAAGGAAACGACAGAGAAAGaCAGCTGGGGCCATGGAGTCCTCTGAAGAGGCGCTGCGCACCTTCGTCCAAGTGGTCAGTGAGAAGTACAACCCAGAGAATTTCCCATACTGCCGTGGGAACGGCATGGGTGTCGTAGTGCTTTCCAGTCCACAGGGGTCGCCCATTAAAGATCGTCTGAATCTGCCGAGTGTGCTGGTCCTGGACGGCTGTGGCATCAGTAAAGCTGGGGACGAAGCTGAGGTGGCCACCTTTTGTGCCCATGTGGTGGAGCTGGACCTGTCCCACAACCAGCTACAAGACTGGGGGGAGATCTGCACGATTGTGTCTAACATCCCAAACCTGGACTTCCTTAACCTGAGTATGAACCCTCTGAGTGGGATTGAGCTGGAGCCGGGCCTGGCTGAGGTGTTCTTCCGGGTCCGCCGCCTGGTTCTCATCAACACGCGTGTCACTTGGGACAcggtacacacactcacacgccagACCCCTGAGTTAGAGGAGCTCTTCCTTTGTCTGAATGAGTACGACCAAGTGGCCGAATCCCCGGTTCCCTGCCCCTCCCTGCGCCTGCTTCAGATCACAGACAACCAGCTACAGGAGTGGGACGAGGTGCGTAAGTTTGGGCCCATGTACCCAGGCCTGCAAAACCTGGTGTTGTCCAACAACAAACTGGGCTCTGTGGAGGAGGACACACCTCAGGACACACTGCAGCGCCTGTTTCCTAACCTGCGCAGCATCAACCTCAACAACTCAGggcTGAACCGATGGGAGGACATAGAAAGGCTGAATTTCTTCCCTAAGCTGGAGGAGGTGAGGCTGATGGGGCTTCCCTTACTGCAGCCCTACACAAACAAAGAGAGACGCAACCTCACCGTGGcacaGTTGCCATCTGTGTCTGTGTTAAACGGTAGTGTGGTgacggaaggggagagagaagacgcTGAGAGGTTCTTCATCAGACACTACCTGGACCTTCCTGAAGAGACGCTGCCTCATAGGTACTcttaccgatcactcttgaggccctgggtctcaactgccctTTGTCTTCCCCTTCATTCAGCTCTTTCTCAGGAGATCATGTACCCCTATGGGCCTACCTACCGAGATCTGGAGACACCCAAGATGGATGATGGGAGTTCCACTGAAATAATTATACTCATGCCATTCATTTTTTTCAATAACCCCTACCGCTCCATCTATgtCAACAACAACGGTGTGATCTCCTTCGAAGTACAGGTGAGCCAGTTCACCCCCGAGGCCTTCCCCCTGAGTGACAGCAGATCCTTCATTGCCCCACTATGGGCAGACGTGCACAACGGCATCCGCGGAGACGTGTACTACCGTGAGAGCACAGACCCAGAGTTACTGGAGCGGGCCACACAAGAAATCCGCAAGTACTTTAAGAACATGCCCACCTTCACAGCCACCTGGATCTTCATCACAACCTGGCACCAGGTCACCTTCTACGGAGGCAGTCAGACCACCCCGGTGAACACATTTCAGGTTGTGTTGATATCCGACGGTCTGTCATGCTTTTCCATGTTCAACTATGGAGAGATCAACTGGAGCACAGGCACAGCCAGTGGAGGAGACCCTCTGACTGGTTTAGGTGGTAGCACAGCACAGtcaGGTTTTAATGGAGGAGAAATCGGTAACTTCCTCAACCTACCTGGGTCCCGTTCCAATGCCGTGGTTGAAATCGAGAGGACGACCAATGTAAACGTGCCTGGCCGGTGGGTCTTCCGTGTAGACACTGCCCTGATAGACCCTGCCAATGGCTGCAGTTACAATGGGCGGTTCTATCGGCGCGGTGAGATCTTCTGGCTGTCCGACCAGTGCTCCCAGCGGTGCCGCTGCCTGGACATGGACAACGAGGTGCTCTGCCGGGAGGCGCCGTGTAGCCAGCTGGAAACTTGTGAGCAGAAGGAGGGTGCCTTCTACTGCCAGTCTACGCGCACCAGCACCTGTGTGGTTTTCGGCGACCCTCACTACCACACCTTTGATGGCTTCCTCTACCACTTCCAGGGCACCTGCTCCTACCTGTTAGCTCGGCCCTGCTGGGAGGTGGCTGGCCTGCCCTTCTTCAGCGTGGAGGCCAAGAATGAGAACCGCGGCATGGCCTCTGTGTCCTGGCTGAAAGATGTCACTGTGGAGGTGTACGACCACAGAGTCATCCTGCCTAAGGGCAGCCAGGGCACAATACAGGTGGATGGACTGATGAAGACACTGCCAGTCCAACTCCAGCTAGGTGCAGTCAGGGTGTACCAGTCGGGCATGGCCGTCGCCCTGGAGACCGACTTCGGCCTCCTGGTGACCTACGATGGGCAGCACTACGCCTCCATTTCCCTGCCCAGCTCCTACTTCAACAACACATGCGGCCTGTGTGGTAACTATAACGACGACCCTGCCGACGACCCTGTGCTGCCCGACGGCTCGCTGGCCGAGAGCGTAGTGGCGCTGGGTGGCAGCTGGCGGGCGGAGGACGCTGACTGGCGCTGCACAGACGGCTGTGCCCAGAACTGCAGTGTCTGTGAACCATTGACCGAGGCGTTCTACTTCCGCCCGGACTACTGTGGAATCATCAACAAGACGGACGGGCCTTTCAGGGACTGCAGGGCAGTGGTGGACCCAACGGCCTTTGTCTATAGTTGTGTCTACGACATGTGCAACAACAAGGACAACATTACCACCCTCTGTCAGGCCATTCAGGCCTACGCCTTAGCCTGCCAAGCCCTGGGGGTCACCATACGAACCTGGAGGTCACACACCTTCTGTGCCCTGAAATGCCCTGAGTCCAGCCACTACCAGGTGTGCACCAGTGCCTGCGCCTCCTCATGCTCGGACCTCACCTCCCACCTGTACTGCACCCACCCTTGCACAGAGGGCTGCCAGTGTGACCCGGGATACGTGCTGAGTGGCAACCGTTGCGTCCGGCACCAGGACTGCGGCTGCGAGCATGAGGGCCTCTACTACCCTCTCAACGACACTTTCTGGGCGGGCCCTGCCGGCGAGGATGGAGAGTGCACCCTGCGCTGCGTCTGTGGGCCCAACGGCAAAGTCTCCTGCTTCAACGATTCATGTAGAGAAGGCgaagtgtgtgtgacagagttcGGCCTGTTGGGCTGTTACCCCCGCAGGGAGGGGGTGTGTTCTCTAGGCCAGAATTTTGTGACGGCCTCTTTCGACGGGACCTCCATGCCCTTCCCGGACGACAGCTCCTACTACCTGCTGAGGTCGTGTGGGCCAATGCCGGCCAACGTGTCTGCTGTGGAAGTAAAGATGGGCCGGCGGCTGGTAAACAAGGGTCCATACTGGATGCGGCCCGTGGTGGTCAGGGTGGCCAACCTGGAGGCCCAGATGGGTGGATCGGACTTTGACACGGTGAAGGTCAGTATTATAGCCTGGTgctccagtctgtttgtgctttaTTATGATGTGTCTAAATCCCAGCTGAACGGTGAGCTGGTACTACTGCCTTATGTCCACCCACTGGAGACCCTAATGATCTACCGCGCCCCTGGCAACGCTACCGTGGTGGAGTCCAGCGGATTGGTCCTAGTCCGCTACACCCGTCAGGGCCTcctcaacatctctctctctaccctcttttACAACGCCACCTGCGGCCTGTGCGGTCTCTTCAACGGAAACGCCAGCGACGATCTCCGTCTGCCTAACGGCCGGCTGGCCGAATCCCTCGAACTCTTCACTGAGGGCTGGCGAGCCATTGCTGACGACCTGACATGCAATGGCGATTGCGATGACCTGTACCGCATGTGCACGGACCTGCGGCTCTACCAGAGCCCGTGGATGTGTGGCAACATCAACGACCTGGGGAACAGCTCCTTCCTGGCGTGCCACGGTGCCGTCAACCCCTCGCCGTTCTTCCGGAACTGCCTGTACAACATGTGCATGCGGGAGGGAAACCGCTCGGTGCTCTGCTCTTCGCTGCAGGCATATGCCTCGGCCTGTCAGGATGCCCAGGTGGACCTTGCTGCCTGGAGGAGTGCTACCAATTGCCCCTTGCCCTGTCCGGAGAACAGTTACTACGATGAGTGCACCAGCGCTTGCCCACTGACCTGCGCCGGCCTGGATGAGCTCGCCGAGCTGTGTCCACTGTCCTGTCGGGAGGGCTGCCAGTGCAGGGAGGGCTTTGCACTCCACAACGGCCAGTGCGTGGCGCGCAGCGACTGCGGCTGCATCATCTCTGGGGGCCGGCAGCTGGCCACCAACCAGATCTTCTGGAATAACTGGGAGTGCCAGGAGCGCTGCTACTGCAATGGCTCGGACAACCGCGTCTACTGCACGCTGACACCGTGCCAGGAGGGTGAGTACTGCCAGGAGGACCTTGAGGGCCTCTACTTCTGCCAGCCGCGCACTGAAGCGTTGTGCATTGCCGCTGGTTACAGCCACTTCCTGCCATTCGGAGGTGTGCCCTTCGAGCTGCAGAGCAGCTGTACCTTGATCCTGGCTACAACGAGGTGCAACAGCGGAGTGGCGGGAGAGGAGGATATAGACCAGAGCACCGCCACCCGACCCAAGACGAGCACCAGCGCCGACCTCCCTCGCTTCAAGCTGTCAGCCCAGAACGAGGAGAGGGACACGGGGCAAGCCATCTGGGTGAGGGGGTTCATCTTGGAAGTCTACGGCTATGAGATTGAGGTGTCTCGGAGCTATAAACACACCATCACGGTGAATAAGGAACGTCTGTACCTGCCTTTGAAGCTGGGGCCGGGGAAGGTCCACATCTTCACTTTCGGCATGCAGCTGGTGTTGGAGACGGACTTTGGCCTGAAGGTTGCCTTCGACTGGAACACCCTGCTCCTGCTCACGCTGCCTCGACGCCTCTACAACACCACCTGCGGCCTGTGCCAGGGCATGCCACTTTCCTCTCCACCCGCACTCACCACCAGCAACTGGGGCATGGCCTGGGCTGAGCAAGACACATTCTGCCAGGTGGGCTGCGGTGACTCGTGCCCACGTTGTGGGTTGGTCGAGAGAGGCTTTGGTGCCACCGATGCCCCTTTACTCGTCGCGGACGCCTACATGGAAGGCGTGGCCCaagatggtgagggaggaggaaTCAATGTTGATGGCGGGGGTTACACGGGAATCCGATTCCACCTGGGCGATGGGCTGCACTTGTTTGTGGAGCCCGAGGCAGTGCGTCTGTGCGGGTTGATCGTGGACCGGGGCGGTGTGTTTGCGCGCTGCCACAGCAAGGTGGTGCCGGCGTTCTTCTACCAGAACTGCCTGCAGGACACATGCCTGGACCGGGGTGCCTCGGGGACCATTTGCAACTGGCTGCAGATCTACACCAGCACATGCCAGACCCAGGGGGTGCGTGTGTTAGGCTGGAGGAGTGACACGCCCTGTGTGCTGACGTGCCCAGCCAACAGCCACTACTCTAGCTGCATGTCAGTGTGCCAACCGCAGTGCGCCCCAGCCCGCGGCCCGAGGGAGTGCACCCAAGACTGTGTGGAGGGCTGCCAGTGTGACCAGGGATACGTCCTCAATGGCAAGGGTTGCATCCGGCCCAAGAACTGTGGCTGCTACAACGACGGCAAGTACTATGAGCCCAAACAGCTGTTCTGGAACAGTGATTGCACCAAGCGCTGCCAGTGCATCGGCCGTAATCTCATCCAGTGTGACCCGCGCCGCTGCAAGGCCGAGGAGGAGTGCGCCCTGCGCCATGACGTGCGCGGCTGCTTCACCCAGCGCTCGCAGCATTGCGTGGCGTCCGGTGGCGGTGTCTTCAGGACCTTTGACGGGGCGTCCCTCCGCCTGCCTGCCTCCTGCTCCTTCGTGCTGTCCACCAACTGCCACAAGCTACCTGACCTCTCCTTTCAGCTCATCGCAAACTTCGACAAGTGGAGCacacccaacctcaccaccatcTCCCATGCATACCTCTATATTAACGAGGAGAATATCCTGATCTCCGGGAGCACCGTGAAGGTGAACGGCACTCCTGTGTCGTTGCCTTTTGTCACGGGCCTGATGACGCGCGTCTCCACATCGGAGGGCTTCCTGGTCATCGACACGCCCCAGGACATCCAGGTGCGCTACAACCGCTTCAACACGCTCAGCATCACTATGGGCCAGCGGTTGCAAAACAagGTGTGCGGCCTTTGCGGCAATTTCAATGGAGACCCTACTGACGACTACATCACCTCCCGTGGAAAGCCGGCCATCAGCGCCCTGGAGCTGGCCCAGAGCTGGAAGACCAATGGCATGCAGAacagCTGTGATGAGACCCAGTACATGGCGCTGGCCCAGTCGTGTGAGAACACAGCTGTGCTGGGCCTGCAGGGCGAGGAGGGGTGCCAGAAGCTCACCCAGATGAAGGGCTTCTTCCAGCCCTGCCACGGCCTGCTGGACCCCAGGCCCTTCTACCAGTCCTGCTACCTGGATGGTTGCTATAACCACCACAAGGCCCAGGTGTGCGGCTCGCTGGCTGCCTACGCCGAGGCCTGCCGCTCCCTAGGCACGCTCACCACCAAGTGGATTGCCCAGGAGAATTGTTCAGAATGGATCTACGACCCTTGTGCAGGAGAGATCTGCACCAACAACACGTGTGAGCAGGAGAACGGGGGAGACCTGTGTGGCTGCCCTGAGCTGCCCAACAACGCTGGTGGCGAGGATGACATAATCCAGGCGGAGGTGACATGTAAGCACGCCCAGATGGAGGTGTCCATCTCCAAGTGTAAGCTCTTCCAGCTGGGCTTCGAGCGTGAGGACGTGAGGATCAATGACCAGTACTGCCCCGGCATTGAGGGAGAGGACTTCATCTCCTTTCACATCAACAACTCCAAGGGCCATTGCGGCTCCATTGTACAGTCCAACGGCACACACATCATGTACAAGAACACGGTGTGGATCGAGAGTGTGAACAACACAGGCAACATCATCACCAGGGACAAGACAATCAACGTGGAGTTTACCTGCGCCTACGAGCTAGACATCAAGATATCCTTGGAGACCGTGCTCAAGCCCATGCTCAGtgttATCAACCTCACCCTCCCCACCCAGGAAGGCAACTTTATCACTAAGATGGCGCTGTACAAGAACTCCTCGTACCGCCAACCGTACCGCGAGGGTGAGGTGGTGCTGAGCACACGGGACGTCATCTTTGTGGGGGTGTTTGTGGAGGGGGCCGACGAGGACCAGCTCATCCTCATTGTCAATATGTGCTGGGCCACGCCGTCCCGCTACAGCAACGACCACCTCCGCTACGTCCTCATAGAGAGAGGTTGTCCCAACGTCAAGGACAATACCATCGGCATGGCTGAGAACGGGGTGTCCCTCACCTGTCGCTTCCACGTCACCGTCTTCAAGTTCATCGGGGACTACAGTGAGGTCCACCTCCACTGTGACGTGTCACTGTGTGACCACAAGACCAATGCCTGCAAAGTGaactgTCCCCACAACAGGAGAATGTACTCAGACTACAGCGATCACAAGGAGCAGATCCTCACTGTAGGACCCATCAGAAGGCGAgAGTCGGACTGGTGTGCGGTGGGTAATGGAGGCTGTGAGCAGATCTGCACCAGTAAAGGAATGGGAGCTATGTGTAGCTGTGTGACTGGGATGCTGCAGAGGGACGGAAAGAGCTGTCGAGCTGTCAGCTCCAGCGTTGACCTTCGACCCCTTGTTTTCCCTCTGGCTCTTAGCACCGTGGTCTCCGTgctcctcactcacacacacaattccctcttctcctaaccctgggcggacagtcagagagagaggagggagagagagatataacacGAAAAAAACAGCCAACCAGAGGAGAGCAGACACttcctactcactgtcacagagACTGCCACAGCAACCAATCACAGAGCAGAGAGGCACTTCCCACCCTTTGcactaaacaaaaacaacaacaactcacAAGACTGGGGCACTGGATCACAATGGAAAAAGCCCTCCAAAAGAGTCTCTCTATTCACGTATACTTTAGCTAGACAGCAGAAAGTCGGTATATTTCATTTAACAAACAGTTTAGTGAATTAGTGCTAGATACAGTGTTTTTTTATGAGAGGTGAGGGGATAGTTTGCTCTACATTTATCTTTGATAGCAAAGCTTGGTtgctaaaatgtttttaaaatcaTTGTATCATTATTTATATGTGAATCAGAGGCTGTGTATGTGAATCGATTACCTGTTCCCTTCTCAGCCCCTAATCCCCTAATCTGAAACTACAGTATGAGTCTCAGTAACATACAAAGTAATGCTCTggtgcagtggttcccaaactttttacagtcccgtaccccttcaaacattcaacctccagctgcatacccctTCTAGCGCCAAGgccagcacactctcaaatgttgtttttttgccatcattgtaag
>TU1227219
GCAACAACAAGGACAACATTACCACCCTCTGTCAGGCCATTCAGGCCTACGCCTTAGCCTGCCAAGCCCTGGGGGTCACCATACGAACCTGGAGGTCACACACCTTCTGTGCCCTGAAATGCCCTGAGTCCAGCCACTACCAGGTGTGCACCAGTGCCTGCGCCTCCTCATGCTCGGACCTCACCTCCCACCTGTACTGCACCC

Function

NR:

description
LOW QUALITY PROTEIN: alpha-tectorin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939508.1 False 8801 mRNA 0.56 32 45732752 45815120
TU1227219 True 204 lncRNA 0.60 2 45754440 45766083

Neighbor

gene id symbol gene type direction distance location
LOC110537682 LOC106567574 coding downstream 6431 45677378 ~ 45726321 (-)
LOC110537679 LOC106567575 coding downstream 88681 45590761 ~ 45644071 (-)
LOC110537678 LOC106567577 coding downstream 159429 45558076 ~ 45573323 (-)
LOC110537676 LOC106567578 coding downstream 204995 45515361 ~ 45527757 (-)
LOC110537675 LOC106567579 coding downstream 227876 45466504 ~ 45504876 (-)
LOC118937677 NA coding upstream 1734 45816854 ~ 45820106 (-)
LOC110537687 tiprl coding upstream 52991 45868111 ~ 45878506 (-)
LOC110537691 LOC106567568 coding upstream 202263 46017383 ~ 46023676 (-)
foxr1 LOC106567616 coding upstream 426410 46241530 ~ 46243978 (-)
LOC110537697 gatsl2 coding upstream 507227 46322347 ~ 46343466 (-)
G1078031 NA non-coding downstream 13413 45718881 ~ 45719339 (-)
G1078032 NA non-coding downstream 14680 45717786 ~ 45718072 (-)
G1078072 NA non-coding downstream 35147 45697383 ~ 45697605 (-)
G1078040 NA non-coding downstream 119379 45606186 ~ 45613373 (-)
G1078117 NA non-coding upstream 26996 45842116 ~ 45843254 (-)
G1078085 LOC106567570 non-coding upstream 31677 45846797 ~ 45847092 (-)
G1078083 LOC106567570 non-coding upstream 32533 45847653 ~ 45851731 (-)
G1078119 NA non-coding upstream 37376 45852496 ~ 45852726 (-)
G1078120 NA non-coding upstream 41142 45856262 ~ 45856649 (-)
gria4b LOC106567580 other downstream 579415 45133844 ~ 45296904 (-)
LOC110537661 LOC101073377 other downstream 1131864 44546519 ~ 44601149 (-)
G1076460 NA other downstream 1277482 44454648 ~ 44455270 (-)
G1075509 NA other downstream 1958327 43774064 ~ 43774425 (-)
G1075399 NA other downstream 2071915 43660559 ~ 43660837 (-)
G1078323 LOC106567565 other upstream 387484 46202604 ~ 46206088 (-)
G1078783 NA other upstream 1001323 46816443 ~ 46817065 (-)
LOC110537706 LOC106567549 other upstream 2099431 47911648 ~ 47942039 (-)
G1081055 NA other upstream 2603301 48418421 ~ 48418884 (-)
G1081571 NA other upstream 3086288 48901408 ~ 48905274 (-)
G1078096 NA non-coding upstream 3361 45769444 ~ 45769676 (-)
G1078097 NA non-coding upstream 6390 45772473 ~ 45772865 (-)

Expression


Co-expression Network