foxr1 (LOC106567616)


Basic Information

Item Value
gene id foxr1
gene name LOC106567616
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 46241530 ~ 46243978 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021623930.2
GATTTGAGTGAATTCAGTCAGAACTTATGATGAGTTTCAAAAGAGGGGTATTTTGGCGTGTGTGATATATTCAGAAGTGTTTTTTACGTTACTCATATCAACTCTATAGACAAAACGAGAATGTCTCTACAATTCCAAACTCGAAGCAGGTTTCTTGAGCTCCATCTTTCAAACAGCCTTAACGACTGGGATATGGATGAAGAGATCAAGCTGACCACAACAACTGACCAATTTTACCAAGCAGGAGACAAACGGAATGATCAGTATCTGGTTCAGTGGCAGTGTGCAAGAATATCGAGAAGAAAGGACGACCTCTCTTTTCAAAACTATCAGAAATCAGTTGAGGACTCTCCAATACAGCCAAATCTGTGGTTGATGGTCAACCCCAACCTAGCCTGCCCAATTAAGTATCCCAAAAAAGTAACAAAGATATTGAGTCCCAAGGTGCCACTGAAACACCTGGTACCAGTACCCAAGCCCACAGTCACCCATGTCAAACCCAAGTCTATCCCAAATGTGCTTCCAGTTTCACCTCCTGAGGACACCTGCTTGGCCGACTCTCGACATGACGCGTCCTCCAGTGAGTACATGCTTACAGATGAGGATGACGCCTCTTCGGTGGATGTCCCCGTTTGTCGGAAAGTCAAAACTGCCCGCAAGGCAAAGGCCCCTAAGGGTGGACCACGAAAGCTTAGTCTGGCCCAAAGCAAGCGCCTCCAGCGGGTCCTTCAAGACAGCAACAACCTGAAGAGCGGAGCCTGGCTGCGTCCCCCTGTCAACTACTGCATCTTAATCGCCATGGCTATTGGCAGCAGCCGCACTGGCAGCCTCAATGTCCAGCAGATCTATAACTTCACAAGAGAGCACTTCCCATTCTTCCAGACAGCCCCTGACGGCTGGAAGAACACTATCCGCCACAACCTGTGTTTCAGCAACAGCTTTCGTAAGACCCCCCAGCAGGTGTGCAGCGAGGGGAAGAGGAAGTCCTGTCTGTGGCACCTGACTCTAGAAGGACGCCGGAGGCTGAGGGATGAAATCCACACCCTTACCGGGGACTCGTACAAAGTGTTGAAGAGAAGCATGAATAATCCTGATATGATTCAGACTTTGTTTGCGCTATGATCTGTGCCTTAGAGGTTACCCCAAACTGAGGTGGGACCTTGGGACAATGGCTGTGATGCAAGGGGCATCGATGGCTGTTGATAATGGATAAGTGAACAGCAGCACTTCAATTATGTTTTCCTTAGACTGTATATTTTTTGGGTATGTTATGGATTTTGGGGGTGTGCTAATGtttttcaggtgtgtgtgtgaatttatcACTAACTGTACTTTTGGATTTGTTCTGAAAATAAAAATGCATCAAATAAC
>XM_036937656.1
TTGGAGATTTGAGTGAATTCAGTCAGAACTTATGATGAGTTTCAAAAGAGGGGTATTTTGGCGTGTGTGATATATTCAGAAGTGTTTTTTACGTTACTCATATCAACTCTATAGACAAAACGAGAATGTCTCTACAATTCCAAACTCGAAGCAGGTTTCTTGAGCTCCATCTTTCAAACAGCCTTAACGACTGGGATATGGATGAAGAGATCAAGCTGACCACAACAACTGACCAATTTTACCAAGCAGGAGACAAACGGAATGATCAGTATCTGGTTCAGTGGCAGTGTGCAAGAATATCGAGAAGAAAGGACGACCTCTCTTTTCAAAACTATCAGAAATCAGTTGAGGTTTCACCTCCTGAGGACACCTGCTTGGCCGACTCTCGACATGACGCGTCCTCCAGTGAGTACATGCTTACAGATGAGGATGACGCCTCTTCGGTGGATGTCCCCGTTTGTCGGAAAGTCAAAACTGCCCGCAAGGCAAAGGCCCCTAAGGGTGGACCACGAAAGCTTAGTCTGGCCCAAAGCAAGCGCCTCCAGCGGGTCCTTCAAGACAGCAACAACCTGAAGAGCGGAGCCTGGCTGCGTCCCCCTGTCAACTACTGCATCTTAATCGCCATGGCTATTGGCAGCAGCCGCACTGGCAGCCTCAATGTCCAGCAGATCTATAACTTCACAAGAGAGCACTTCCCATTCTTCCAGACAGCCCCTGACGGCTGGAAGAACACTATCCGCCACAACCTGTGTTTCAGCAACAGCTTTCGTAAGACCCCCCAGCAGGTGTGCAGCGAGGGGAAGAGGAAGTCCTGTCTGTGGCACCTGACTCTAGAAGGACGCCGGAGGCTGAGGGATGAAATCCACACCCTTACCGGGGACTCGTACAAAGTGTTGAAGAGAAGCATGAATAATCCTGATATGATTCAGACTTTGTTTGCGCTATGATCTGTGCCTTAGAGGTTACCCCAAACTGAGGTGGGACCTTGGGACAATGGCTGTGATGCAAGGGGCATCGATGGCTGTTGATAATGGATAAGTGAACAGCAGCACTTCAATTATGTTTTCCTTAGACTGTATATTTTTTGGGTATGTTATGGATTTTGGGGGTGTGCTAATGtttttcaggtgtgtgtgtgaatttatcACTAACTGTACTTTTGGATTTGTTCTGAAAATAAAAATGCATCAAATAAC
>XM_021623931.2
CCTATAATTGGAGATTTGAGTGAATTCAGTCAGAACTTATGATGAGTTTCAAAAGAGGGGTATTTTGGCGTGTGTGATATATTCAGAAGTGTTTTTTACGTTACTCATATCAACTCTATAGACAAAACGAGAATGTCTCTACAATTCCAAACTCGAAGCAGGTTTCTTGAGCTCCATCTTTCAAACAGCCTTAACGACTGGGATATGGATGAAGAGATCAAGCTGACCACAACAACTGACCAATTTTACCAAGGAGACAAACGGAATGATCAGTATCTGGTTCAGTGGCAGTGTGCAAGAATATCGAGAAGAAAGGACGACCTCTCTTTTCAAAACTATCAGAAATCAGTTGAGGACTCTCCAATACAGCCAAATCTGTGGTTGATGGTCAACCCCAACCTAGCCTGCCCAATTAAGTATCCCAAAAAAGTAACAAAGATATTGAGTCCCAAGGTGCCACTGAAACACCTGGTACCAGTACCCAAGCCCACAGTCACCCATGTCAAACCCAAGTCTATCCCAAATGTGCTTCCAGTTTCACCTCCTGAGGACACCTGCTTGGCCGACTCTCGACATGACGCGTCCTCCAGTGAGTACATGCTTACAGATGAGGATGACGCCTCTTCGGTGGATGTCCCCGTTTGTCGGAAAGTCAAAACTGCCCGCAAGGCAAAGGCCCCTAAGGGTGGACCACGAAAGCTTAGTCTGGCCCAAAGCAAGCGCCTCCAGCGGGTCCTTCAAGACAGCAACAACCTGAAGAGCGGAGCCTGGCTGCGTCCCCCTGTCAACTACTGCATCTTAATCGCCATGGCTATTGGCAGCAGCCGCACTGGCAGCCTCAATGTCCAGCAGATCTATAACTTCACAAGAGAGCACTTCCCATTCTTCCAGACAGCCCCTGACGGCTGGAAGAACACTATCCGCCACAACCTGTGTTTCAGCAACAGCTTTCGTAAGACCCCCCAGCAGGTGTGCAGCGAGGGGAAGAGGAAGTCCTGTCTGTGGCACCTGACTCTAGAAGGACGCCGGAGGCTGAGGGATGAAATCCACACCCTTACCGGGGACTCGTACAAAGTGTTGAAGAGAAGCATGAATAATCCTGATATGATTCAGACTTTGTTTGCGCTATGATCTGTGCCTTAGAGGTTACCCCAAACTGAGGTGGGACCTTGGGACAATGGCTGTGATGCAAGGGGCATCGATGGCTGTTGATAATGGATAAGTGAACAGCAGCACTTCAATTATGTTTTCCTTAGACTGTATATTTTTTGGGTATGTTATGGATTTTGGGGGTGTGCTAATGtttttcaggtgtgtgtgtgaatttatcACTAACTGTACTTTTGGATTTGTTCTGAAAATAAAAATGCATCAAATAAC
>XM_036937657.1
CCTATAATTGGAGATTTGAGTGAATTCAGTCAGAACTTATGATGAGTTTCAAAAGAGGGGTATTTTGGCGTGTGTGATATATTCAGAAGTGTTTTTTACGTTACTCATATCAACTCTATAGACAAAACGAGAATGTCTCTACAATTCCAAACTCGAAGCAGGTTTCTTGAGCTCCATCTTTCAAACAGCCTTAACGACTGGGATATGGATGAAGAGATCAAGCTGACCACAACAACTGACCAATTTTACCAAGGAGACAAACGGAATGATCAGTATCTGGTTCAGTGGCAGTGTGCAAGAATATCGAGAAGAAAGGACGACCTCTCTTTTCAAAACTATCAGAAATCAGTTGAGGTTTCACCTCCTGAGGACACCTGCTTGGCCGACTCTCGACATGACGCGTCCTCCAGTGAGTACATGCTTACAGATGAGGATGACGCCTCTTCGGTGGATGTCCCCGTTTGTCGGAAAGTCAAAACTGCCCGCAAGGCAAAGGCCCCTAAGGGTGGACCACGAAAGCTTAGTCTGGCCCAAAGCAAGCGCCTCCAGCGGGTCCTTCAAGACAGCAACAACCTGAAGAGCGGAGCCTGGCTGCGTCCCCCTGTCAACTACTGCATCTTAATCGCCATGGCTATTGGCAGCAGCCGCACTGGCAGCCTCAATGTCCAGCAGATCTATAACTTCACAAGAGAGCACTTCCCATTCTTCCAGACAGCCCCTGACGGCTGGAAGAACACTATCCGCCACAACCTGTGTTTCAGCAACAGCTTTCGTAAGACCCCCCAGCAGGTGTGCAGCGAGGGGAAGAGGAAGTCCTGTCTGTGGCACCTGACTCTAGAAGGACGCCGGAGGCTGAGGGATGAAATCCACACCCTTACCGGGGACTCGTACAAAGTGTTGAAGAGAAGCATGAATAATCCTGATATGATTCAGACTTTGTTTGCGCTATGATCTGTGCCTTAGAGGTTACCCCAAACTGAGGTGGGACCTTGGGACAATGGCTGTGATGCAAGGGGCATCGATGGCTGTTGATAATGGATAAGTGAACAGCAGCACTTCAATTATGTTTTCCTTAGACTGTATATTTTTTGGGTATGTTATGGATTTTGGGGGTGTGCTAATGtttttcaggtgtgtgtgtgaatttatcACTAACTGTACTTTTGGATTTGTTCTGAAAATAAAAATGCATCAAATAAC

Function

NR:

description
forkhead box protein N5-like isoform X1

GO:

id name namespace
GO:0048513 animal organ development biological_process
GO:0009888 tissue development biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0007389 pattern specification process biological_process
GO:0051090 regulation of DNA-binding transcription factor activity biological_process
GO:0009790 embryo development biological_process
GO:0005667 transcription regulator complex cellular_component
GO:0008134 transcription factor binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0008301 DNA binding, bending molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021623930.2 False 1371 mRNA 0.47 6 46241530 46243966
XM_036937656.1 False 1196 mRNA 0.47 6 46241530 46243971
XM_021623931.2 False 1380 mRNA 0.47 6 46241530 46243978
XM_036937657.1 True 1200 mRNA 0.47 6 46241530 46243978

Neighbor

gene id symbol gene type direction distance location
LOC110537691 LOC106567568 coding downstream 217854 46017383 ~ 46023676 (-)
LOC110537687 tiprl coding downstream 363024 45868111 ~ 45878506 (-)
LOC118937677 NA coding downstream 421424 45816854 ~ 45820106 (-)
LOC110538902 LOC106567602 coding downstream 426410 45732752 ~ 45815120 (-)
LOC110537682 LOC106567574 coding downstream 515209 45677378 ~ 45726321 (-)
LOC110537697 gatsl2 coding upstream 78369 46322347 ~ 46343466 (-)
LOC118937925 NA coding upstream 118350 46362328 ~ 46362459 (-)
LOC110537698 LOC106567561 coding upstream 138524 46382502 ~ 46689581 (-)
LOC110537699 LOC106567556 coding upstream 667479 46911457 ~ 47297035 (-)
LOC110537700 LOC106567555 coding upstream 1382678 47626656 ~ 47658365 (-)
G1078292 LOC106515459 non-coding downstream 4592 46234750 ~ 46236938 (-)
G1078240 NA non-coding downstream 160488 46078119 ~ 46081042 (-)
G1078160 NA non-coding downstream 233447 45964019 ~ 46008083 (-)
G1078159 NA non-coding downstream 296538 45915318 ~ 45944992 (-)
G1078373 NA non-coding upstream 48427 46292405 ~ 46292660 (-)
G1078374 NA non-coding upstream 48768 46292746 ~ 46292969 (-)
G1078380 NA non-coding upstream 58958 46302936 ~ 46303323 (-)
G1078381 NA non-coding upstream 59516 46303494 ~ 46303699 (-)
G1078384 NA non-coding upstream 61492 46305470 ~ 46305720 (-)
G1078323 LOC106567565 other downstream 35442 46202604 ~ 46206088 (-)
gria4b LOC106567580 other downstream 1088193 45133844 ~ 45296904 (-)
LOC110537661 LOC101073377 other downstream 1640642 44546519 ~ 44601149 (-)
G1076460 NA other downstream 1786260 44454648 ~ 44455270 (-)
G1075509 NA other downstream 2467105 43774064 ~ 43774425 (-)
G1078783 NA other upstream 572465 46816443 ~ 46817065 (-)
LOC110537706 LOC106567549 other upstream 1670573 47911648 ~ 47942039 (-)
G1081055 NA other upstream 2174443 48418421 ~ 48418884 (-)
G1081571 NA other upstream 2657430 48901408 ~ 48905274 (-)
G1081813 NA other upstream 2744034 48988012 ~ 48988353 (-)

Expression


Co-expression Network