LOC110537697 (gatsl2)


Basic Information

Item Value
gene id LOC110537697
gene name gatsl2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 46322347 ~ 46343466 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021623934.2
TTTTGATTGGCAAGTTGTTTGTTTCACTGTTACCAGCTGCTGGACGATTCCAATCCCTGTCGGAGAGAAAACACGCGGACCGACAGTCCTTCTCAATTTTCTTCCTCCCTGTTTACCTCATTGTGCTTTCTTTTATTTCACCCTGCTTCTGTCTTGCTCTCTTTTACTCTTTTCCTAAGTGGATAACTTTTTCTTCTCCCTCCTTTGTTTTCTGCTCAGTTTCACGGTTTTGATACGCTCTAGCTATATAGCATaggtatatttatttatttttattagaaAGGAtatcattttttaatttttttttttagatattcGTCAAATGAGAAGACGCAAAAGATGGAGTTGCATATTTTAGAACACAGTTTGAAAGTAGCGAGTATAGCAAAAGAGGGCATTCAGATTTGCACTCATGGATTAATCAAACTCGCCTTCTTGCCCTCTAAAACAAGATGCAAATTTTTCAGTTTGACGGAAACTCCGGAGGACTATACCCTTATCGTCGACGAGGAAGGCTTCAAAGAACTGCCTGAGTCGGAGCACCTTAGTGTCGCCGAAGCCACGTGGTTGGCTCTCAATGTGGTGTCGGGGGGTGGGAGCACCACCAACTCTCAGCCAATCGGAGTCACCAAAATAGCCAAGTCTGTCATCGCCCCCTTGGCAGACCACAACATCTCTGTGTTTATGCTGTCTACCTATCAGACGGATTTCATCCTGGTTCGAGAGCGGGACCTGCCCATGGTCATGCACACCCTGTCTTCTGAGTTCACCCTGATGAGGGTGGTCAACGGAGAGACCGTAGCCGCCAACAGCCTAGGAGTCACCAACGGCTTTGTCAAGCCTAAACTTGTGCCCCGTCCCATCATCCACCCTCTGTCCAGCCCCAGTAACATGTTCTGTGTGACCAGCCTGGACCCGGACACATTGCCCTCGGTGGCCACCCTGCTCATGGACGTCATGTTCTACTCAGGCGGGATAAAGGAGCCTGGGGCATCTAGTGAGGACACTGGACACATCcgcttcttctctttctctctgattgAGGGCTACATCTCTCTCGTCATGGACGAGCAGACGACACAGCGGTTTCCCAACAATGTCCTCTTCACTAGTGCTTCAGGGGAGCTTTGGAAAATGGTTCGCATTGGAGGACAGCCTTTAGGATTTGACGAGTGTGGTATCGTGGCTCAAATATCGGAACCCCTGGCGACTGCTGACATTCCAGCTTATTACATCAGTACCTTCAAGTTTGACCATGCCCTGGTCCCAGAAGAAAACATCCAGAGTGTGATTGGAGCTTTGAGGACCAATGAGAGCGCAGGACAGTGAAGGCGAGGTGGAAAGAGACCGTGGAACGAGCAATTTATTATGTCAAACTCTTACAAAAAAAAAGTGCCAAGAGGGTAATGCAAAGCTTGAGTCGTGTAGACGGacgactgtgtgtgcgtgtgtgcgtgtgtagacATGCTTTGTACAACGACCAGCAATGTGTCCCTCCTATTCTGAGATGGTTCCAACTACACTCCAAGCCACTCCCTTGAGCATCCACTCTTACCCCAACCAACATCCACCTCTTTGGGGACCCAAAGCAAGAGTGACTACAGTGTTTTTCTTTTCTCTCgctctatttctttctcctcttccttcccctcAGACCATTTCACCATGGCAACGTGACCTACCGAATTTGGGCCTATTTCTTCGACACCAGCCCCTGAGATACTGCAAAGCGGCCCTCACCTCCTTTTACTCTTCATGTGTCACCCACGCGGTCCATGACTGCCTATAGTGATAGGTGTTGCTTTAGTATACCAGACTTTCCTTCCTAACTTTACATTGTTTTTCCATAACCATCATACTGTATTAGTTACCAGTCCTCTTATGGAAAGAAAGAGAATGTACTTTACAAACAATTATCAATATTTCCAttctttgtatttatttttctcaGTGCCAAGAGGTTTTGAAGGCCTTGACCGATGCCTTGTCTAATGCTCAGCGTGTGTGCAATTTCAGATCAGATTTTGTCAGATGGGGAAATGAGACTGGTGAATGTTGCTCTGTTCTGGTGATGAGCGTGAAATGACATTTACTGACGAATCGCAGAGCCACTGATCTATAGAACATATCATATAAATAGTCTAGTCTATATATATGCCAATTTTCATGTAGTTTCAGGAGAACTAGGTTATCGTTTTGCGTTGAGTGCCACACCATGCCTGACTCCAAACCAGTCCTTTACCACAAACTAGAATAATAACTTCAACGCTAGTAAAGCCAGCGTGGTGAAGTGGTAGGGGCCTTGTCATTTATTCTGTTGTGAATGTTTTTTGTGGTCGTGGCTCATTGAACCAGCCCTGCAACCCTGTTGTCAGTTTAGGCAATCATCCCCCACCCCAGTCTGCACTTTAATACAGGTCCATCTTACTGACCTGCTATACTGATGTGAAAACAGGGGAAGGCTTATTTTATCCTTGAAGGATTTCTTGATAAGTAGACTTTTGTTGGTCTTAAACCATTGGTGGGTATTATATTCTCTGTCAAGCAAAAGCTTTCTTCGGTTAGCTTTGATATACAGAAACCATGTATTTATCAGTGTTAACATAAAGGGTGACATTTCTTCTGataaagaaagttatttgtt

Function

NR:

description
PREDICTED: GATS-like protein 2

GO: NA

KEGG:

id description
K23081 CASTOR2; cytosolic arginine sensor for mTORC1 subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021623934.2 True 2644 mRNA 0.45 9 46322347 46343466

Neighbor

gene id symbol gene type direction distance location
foxr1 LOC106567616 coding downstream 78369 46241530 ~ 46243978 (-)
LOC110537691 LOC106567568 coding downstream 298671 46017383 ~ 46023676 (-)
LOC110537687 tiprl coding downstream 443841 45868111 ~ 45878506 (-)
LOC118937677 NA coding downstream 502241 45816854 ~ 45820106 (-)
LOC110538902 LOC106567602 coding downstream 507227 45732752 ~ 45815120 (-)
LOC118937925 NA coding upstream 18862 46362328 ~ 46362459 (-)
LOC110537698 LOC106567561 coding upstream 39036 46382502 ~ 46689581 (-)
LOC110537699 LOC106567556 coding upstream 567991 46911457 ~ 47297035 (-)
LOC110537700 LOC106567555 coding upstream 1283190 47626656 ~ 47658365 (-)
LOC110537701 LOC106567554 coding upstream 1319578 47663044 ~ 47711376 (-)
G1078384 NA non-coding downstream 16627 46305470 ~ 46305720 (-)
G1078381 NA non-coding downstream 18648 46303494 ~ 46303699 (-)
G1078380 NA non-coding downstream 19024 46302936 ~ 46303323 (-)
G1078374 NA non-coding downstream 29378 46292746 ~ 46292969 (-)
G1078373 NA non-coding downstream 29687 46292405 ~ 46292660 (-)
G1078543 NA non-coding upstream 175521 46518987 ~ 46519204 (-)
G1078551 NA non-coding upstream 186194 46529660 ~ 46529878 (-)
G1078563 NA non-coding upstream 212029 46555495 ~ 46555908 (-)
G1078611 NA non-coding upstream 284455 46627921 ~ 46628240 (-)
G1078616 NA non-coding upstream 290395 46633861 ~ 46634092 (-)
G1078323 LOC106567565 other downstream 116259 46202604 ~ 46206088 (-)
gria4b LOC106567580 other downstream 1169010 45133844 ~ 45296904 (-)
LOC110537661 LOC101073377 other downstream 1721459 44546519 ~ 44601149 (-)
G1076460 NA other downstream 1867077 44454648 ~ 44455270 (-)
G1075509 NA other downstream 2547922 43774064 ~ 43774425 (-)
G1078783 NA other upstream 472977 46816443 ~ 46817065 (-)
LOC110537706 LOC106567549 other upstream 1571085 47911648 ~ 47942039 (-)
G1081055 NA other upstream 2074955 48418421 ~ 48418884 (-)
G1081571 NA other upstream 2557942 48901408 ~ 48905274 (-)
G1081813 NA other upstream 2644546 48988012 ~ 48988353 (-)

Expression


Co-expression Network