LOC110537700 (LOC106567555)


Basic Information

Item Value
gene id LOC110537700
gene name LOC106567555
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 47626656 ~ 47658365 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036937662.1
AACAGTAATTGGGGGCGTGGTCATGTAAAGCTATGCCTCGCCGTGTGTATCTATTATTGGGTTTGAATGGGGAAGGccttctattcattctatttctgtggTTCAGACAGATTGGTGGCTAGCCAGTTTGGGTTGGTATGTAATGTATGATTAGCATAGATACATACATTTCCGAATCGAAGGATTCATTGCTTCGCCAAAATGTTTTTTATACGTTTGCTTGAACGTTTACCGCCTGACCTGGAATCAGTCGTATTGTAAAAATGAGGCATTTTAAGAATCCAAGCTAGATGGCTAGCTAGCTTTCCATCTTGTAAACTCAATATGCTTTGCTAGCGTAACGTTAGCCAATTTGCTAGCTAACCGTTAGCGGACTAATCGTGTAAACGTTAGTTATTTTggtttgctagctaacgttacattttATTGATGGGATAACGTTAGCTGGCAAGGTGTCCTGTAGTTTGTCCATCTGACTTCCTAAACCTATCTAACGTTAGTTTACCAGCCTCCGCTTTATTCCCTTAACTATCGTTTCGTTTACTGGATTTGACGTAACATTAGCTGGCACTGGCTAGTAGCTGCAAGATATGGCCACTGCCTCTAGCTCCTGTGTGGGGAGAAATGTGTCTAGAAATGGACCCTCTGTCTCGACCCCGACCTCGGGAGCACCTGGACAATCACAGCCTATGGTCGTTGTATGGGAATGGCAGGATGATCTTGGCGTCTGGCTACCGTACAGCGGCCAGGTGAGCGGCTACATAGAACAATGTTTCTCTTCTCCGCGGGGACACAGGAGTGGGGGTCCTGGCTCCACCAGTATCTGGCTCGGACAATCAGATCCCAGTTTGTCGCCTTATCTTATAGACATACCAAGCTTGAAGCAGTTCCGCCAAGATACAGGGAAAACGCGGTCTGTACGCCGTCAGTTGTTTGCCCAGTCCTCAGGCTTGGGTAGCGGAGTATATTGGGAGTGGGTGAATGACGAAGGAGGATGGACTCCATACGAGACTCGCACTTCTATCCTACTAGAACACAGCTACCAGGCACGGCAGGCCACGGCGGACATTGTCTCACACGGCTATAACTACATAGTGGACCTCACGGCGCTGGCCCAGGTCAACAAGGCCACGGGCTACCGGCGACAGGTACGACGGCAGGGTAACCTCCCCTACCCACTGGCATCTGGTGCATCCGTCATACACTCGACCCCGGCCTGCTCCTGCCAGCAGTGTCTGAGCCACAGCAGCACTGGCCCCATGTCCAGCCGCTCGCGCCATTCCTTCTCGTCGGGGCAGCTGAGCCGGCCTAGCCTCCAGGTCCCTAGCAGGGCGACTGGAGCTCACCCCACCTCAGTGTACTCACCCTACCCCAGGAGGCCTCTTTCTGTGGGGGGAATGGCGTGGGGAGGCCCCTGGCCACTGGCACCCTCCGCTAGTCAACTCCCTGGAGCTCAACTGGCCTTGTCCACCAGTGCCAATGGCTTAAGTATCCCCACCATCCCTGTGCAACTGAATGGATCCACCAGTGTGAGCTCAGCCCTGGCAGGCATGGCCTCCATTTTGATGTCAGCAGTGGGACTCGGCGTACGCTTCATGAGTGCTCcctcctccgctcctcctccccccagcagcagcaggcccgcgGGCTCCAAAAGTCGCAGCTCGGTTAGGAGGGAAAAGAGGCAGCACAGGACAGTCCCGGCCCAGAAACCAGAGGATGTCATTCACCGCTACATGGAGGAAGTGGCCTCTGCTCAAGACGAGGACTGCATCATCTGTATGGACCGGCTGTCTTGTCCGTCGGATTATGACGTGGCGTCTGAGGGAGCCCAGTCCATCCAGCCTGGCGCCGTGGGCAAGTTCAAGTGTGGACACACCCTCCACATGCTCTGCATGCTGGCCATGTACAACAATGGTACCAAGGATGGCAGCCTCCAGTGCCCCTCATGCAAGACAATCTATGGGGAGAAGACTGGGACCCAGCCCAAGGGGAAGATGGAGATCTATAGTATCTCCCAGTCCCTCCCTGGCCACCCTGACTGTGGAACTATCCAGATAATTTACAGCATCACCCATGggatacagGGTCCAGAGCACCCTAATCCCGGGCAGTCGTACACCTCTAGAGGCTTCCCTCGCTTCTGCTTCCTCCCAGACAACAAAAAGGGCAGAAAGGTGCTGGAGCTGCTGAAGGTGGCATGGACACGGCGCCTCATTTTTACGGTGGGAACGTCCAGCACCACGGGCGAGCCCGATACGGTGGTGTGGAACGAGATCCACCACAAGACTGAGATGATGTCCAACATGTCGGGTCATGGCTACCCGGACCCCAACTACCTGGACAACGTGCTGTCCGAGCTGGCCTCCCAGGGGGTGACCGATGACTGCCTCCTCAGACAGGAGGACCCCAGCCAGGGAGGAGCGTCAAACTCTAGACTGTGAACTGGTTATGGCTAGGGAGCATCCGACTGTGAAACTGACCGTGAATCACTTTCCTCGTAATGTCGCAACTTCAACATAGAGAACATAAGGGATAAACCAAGTATTCACATTCCCACCTGGAAGTGTTTTTATTAGGTATTCAATGCAAAGCGTATGTCTGAGTGCAGTGTGCCGAATACTACACATACTGATAATGTGGGGTTTGACTTGGACTTTATTAGCTGCAGTAGTGCTCCATTAGCTCTTGGTTTAGTCACCTAGGCTGTGTCTCAAACGGCACCCTGTATACATCCCTATATTTGTAGtgctatatatatttatatatgtacacacacacagtgggcaaaaaagtatttagtca
>XM_021623940.2
AAACAGTAATTGGGGGCGTGGTCATGTAAAGCTATGCCTCGCCGTGTGTATCTATTATTGGGTTTGAATGGGGAAGGccttctattcattctatttctgtggTTCAGACAGATTGGTGGCTAGCCAGTTTGGGTTGGTATGTAATGTATGATTAGCATAGATACATACATTTCCGAATCGAAGGATTCATTGCTTCGCCAAAATGTTTTTTATACGTTTGCTTGAACGTTTACCGCCTGACCTGGAATCAGTCGTATTGTAAAAATGAGGCATTTTAAGAATCCAAGCTAGATGGCTAGCTAGCTTTCCATCTTGTAAACTCAATATGCTTTGCTAGCGTAACGTTAGCCAATTTGCTAGCTAACCGTTAGCGGACTAATCGTGTAAACGTTAGTTATTTTggtttgctagctaacgttacattttATTGATGGGATAACGTTAGCTGGCAAGGTGTCCTGTAGTTTGTCCATCTGACTTCCTAAACCTATCTAACGTTAGTTTACCAGCCTCCGCTTTATTCCCTTAACTATCGTTTCGTTTACTGGATTTGACGTAACATTAGCTGGCACTGGCTAGTAGCTGCAAGATATGGCCACTGCCTCTAGCTCCTGTGTGGGGAGAAATGTGTCTAGAAATGGACCCTCTGTCTCGACCCCGACCTCGGGAGCACCTGGACAATCACAGCCTATGGTCGTTGTATGGGAATGGCAGGATGATCTTGGCGTCTGGCTACCGTACAGCGGCCAGGTGAGCGGCTACATAGAACAATGTTTCTCTTCTCCGCGGGGACACAGGAGTGGGGGTCCTGGCTCCACCAGTATCTGGCTCGGACAATCAGATCCCAGTTTGTCGCCTTATCTTATAGACATACCAAGCTTGAAGCAGTTCCGCCAAGATACAGGGAAAACGCGGTCTGTACGCCGTCAGTTGTTTGCCCAGTCCTCAGGCTTGGGTAGCGGAGTATATTGGGAGTGGGTGAATGACGAAGGAGGATGGACTCCATACGAGACTCGCACTTCTATCCTACTAGAACACAGCTACCAGGCACGGCAGGCCACGGCGGACATTGTCTCACACGGCTATAACTACATAGTGGACCTCACGGCGCTGGCCCAGGTCAACAAGGCCACGGGCTACCGGCGACAGGTACGACGGCAGGGTAACCTCCCCTACCCACTGGCATCTGGTGCATCCGTCATACACTCGACCCCGGCCTGCTCCTGCCAGCAGTGTCTGAGCCACAGCAGCACTGGCCCCATGTCCAGCCGCTCGCGCCATTCCTTCTCGTCGGGGCAGCTGAGCCGGCCTAGCCTCCAGGTCCCTAGCAGGGCGACTGGAGCTCACCCCACCTCAGTGTACTCACCCTACCCCAGGAGGCCTCTTTCTGTGGGGGGAATGGCGTGGGGAGGCCCCTGGCCACTGGCACCCTCCGCTAGTCAACTCCCTGGAGCTCAACTGGCCTTGTCCACCAGTGCCAATGGCTTAAGTATCCCCACCATCCCTGTGCAACTGAATGGATCCACCAGTGTGAGCTCAGCCCTGGCAGTCCCGGCCCAGAAACCAGAGGATGTCATTCACCGCTACATGGAGGAAGTGGCCTCTGCTCAAGACGAGGACTGCATCATCTGTATGGACCGGCTGTCTTGTCCGTCGGATTATGACGTGGCGTCTGAGGGAGCCCAGTCCATCCAGCCTGGCGCCGTGGGCAAGTTCAAGTGTGGACACACCCTCCACATGCTCTGCATGCTGGCCATGTACAACAATGGTACCAAGGATGGCAGCCTCCAGTGCCCCTCATGCAAGACAATCTATGGGGAGAAGACTGGGACCCAGCCCAAGGGGAAGATGGAGATCTATAGTATCTCCCAGTCCCTCCCTGGCCACCCTGACTGTGGAACTATCCAGATAATTTACAGCATCACCCATGggatacagGGTCCAGAGCACCCTAATCCCGGGCAGTCGTACACCTCTAGAGGCTTCCCTCGCTTCTGCTTCCTCCCAGACAACAAAAAGGGCAGAAAGGTGCTGGAGCTGCTGAAGGTGGCATGGACACGGCGCCTCATTTTTACGGTGGGAACGTCCAGCACCACGGGCGAGCCCGATACGGTGGTGTGGAACGAGATCCACCACAAGACTGAGATGATGTCCAACATGTCGGGTCATGGCTACCCGGACCCCAACTACCTGGACAACGTGCTGTCCGAGCTGGCCTCCCAGGGGGTGACCGATGACTGCCTCCTCAGACAGGAGGACCCCAGCCAGGGAGGAGCGTCAAACTCTAGACTGTGAACTGGTTATGGCTAGGGAGCATCCGACTGTGAAACTGACCGTGAATCACTTTCCTCGTAATGTCGCAACTTCAACATAGAGAACATAAGGGATAAACCAAGTATTCACATTCCCACCTGGAAGTGTTTTTATTAGGTATTCAATGCAAAGCGTATGTCTGAGTGCAGTGTGCCGAATACTACACATACTGATAATGTGGGGTTTGACTTGGACTTTATTAGCTGCAGTAGTGCTCCATTAGCTCTTGGTTTAGTCACCTAGGCTGTGTCTCAAACGGCACCCTGTATACATCCCTATATTTGTAGtgctatatatatttatatatgtacacacacacagtgggcaaaaaagtatttagtca

Function

NR:

description
probable E3 ubiquitin-protein ligase DTX2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036937662.1 False 2805 mRNA 0.53 9 47626656 47658364
XM_021623940.2 True 2656 mRNA 0.52 8 47626656 47658365

Neighbor

gene id symbol gene type direction distance location
LOC110537699 LOC106567556 coding downstream 329621 46911457 ~ 47297035 (-)
LOC110537698 LOC106567561 coding downstream 937075 46382502 ~ 46689581 (-)
LOC118937925 NA coding downstream 1264197 46362328 ~ 46362459 (-)
LOC110537697 gatsl2 coding downstream 1283190 46322347 ~ 46343466 (-)
foxr1 LOC106567616 coding downstream 1382678 46241530 ~ 46243978 (-)
LOC110537701 LOC106567554 coding upstream 4679 47663044 ~ 47711376 (-)
LOC110537702 LOC106567552 coding upstream 54645 47712366 ~ 47791030 (-)
LOC110537706 LOC106567549 coding upstream 253283 47911648 ~ 47942039 (-)
LOC110538906 ovol2 coding upstream 1563536 49221901 ~ 49228404 (-)
LOC110537714 dlg2 coding upstream 1651856 49310221 ~ 49598356 (-)
G1080126 NA non-coding downstream 70245 47556123 ~ 47556411 (-)
G1080125 NA non-coding downstream 71861 47554568 ~ 47554795 (-)
G1080121 NA non-coding downstream 73474 47552904 ~ 47553182 (-)
G1080117 NA non-coding downstream 79300 47547097 ~ 47547356 (-)
G1080115 NA non-coding downstream 80455 47545885 ~ 47546201 (-)
G1080244 NA non-coding upstream 136106 47794471 ~ 47801610 (-)
G1080246 NA non-coding upstream 171756 47830121 ~ 47831801 (-)
G1080295 NA non-coding upstream 204658 47863023 ~ 47863384 (-)
G1080296 NA non-coding upstream 205306 47863671 ~ 47863989 (-)
G1078783 NA other downstream 809591 46816443 ~ 46817065 (-)
G1078323 LOC106567565 other downstream 1420568 46202604 ~ 46206088 (-)
gria4b LOC106567580 other downstream 2473319 45133844 ~ 45296904 (-)
LOC110537661 LOC101073377 other downstream 3025768 44546519 ~ 44601149 (-)
G1076460 NA other downstream 3171386 44454648 ~ 44455270 (-)
G1081055 NA other upstream 760056 48418421 ~ 48418884 (-)
G1081571 NA other upstream 1243043 48901408 ~ 48905274 (-)
G1081813 NA other upstream 1329647 48988012 ~ 48988353 (-)
G1081829 NA other upstream 1350984 49009349 ~ 49010152 (-)

Expression


Co-expression Network