LOC110538906 (ovol2)


Basic Information

Item Value
gene id LOC110538906
gene name ovol2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 49221901 ~ 49228404 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021625880.2
cagccccggCCACGTGTCCCCCTCAGCTCGGGTGACTTCATGTGTTCGGAATGTGACAAGGTGTTCCCCCTGCAGTGCATGTTGACGCGCCATCTCAAGTGCCACAGCATGGTGAAGAGACACCCCTGCCACTGCTGTGGCAAGGGCTTCAACGACACCTTCGACCTAAAGAGGCACATGCGCACTCACACAGGTATCCGTCCGTACTGCTGCGAGCTGTGTGACAAGGCCTTCACCCAGCGCTGCTCCCTCGAATCCCACCTGAGGAAGATCCATGGCGTTTTCCAGCAGTATGCCTACCGCCAGCGTCGCTCCAAGATCTTTGTGTGCGAGGACTGCGGCTACACATCCAACCGGCCCGACGAGTACTTCCTCCACATGTGCCAGTGCCACCCGGGCAGCCAAGCCCTGCGCCGCTACTACCGCCACCAGGCACATGAGGGCGCCAACAACATGCTCTCTCAAcacaaacccagccccttttttATTTATACTACGGCTGGGTATTATATGGGTTGATTAATACTCCGGAGTGAAGTTTCACCTAGGTACAGATATAGGATCAGCTTCCCATTCCccaacccaaaccttaaccattagtaggGAAGATGCAACATTTAGATTAGCGTCTACAGGCAACTTTACTTGTTTCTGCCTTAGCCAATTCCTTTGTTGTTACCTTGTCACAAAGTAGAGAAAGTCTAGCACCAAGGCTAAATGcgtcacaagcatttcgctacacccgcaataacatccactacacccgcaatatcatctgctaaatatgtatatGTGGGCCTCCCGGATGGCGCAG

Function

symbol description
ovol2 Enables transcription cis-regulatory region binding activity. Involved in several processes, including negative regulation of Notch signaling pathway; negative regulation of keratinocyte differentiation; and negative regulation of transcription by competitive promoter binding activity. Predicted to be active in nucleus. Implicated in posterior polymorphous corneal dystrophy 1.

NR:

description
putative transcription factor ovo-like protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021625880.2 True 814 mRNA 0.53 2 49221901 49228404

Neighbor

gene id symbol gene type direction distance location
LOC110537706 LOC106567549 coding downstream 1279862 47911648 ~ 47942039 (-)
LOC110537702 LOC106567552 coding downstream 1430871 47712366 ~ 47791030 (-)
LOC110537701 LOC106567554 coding downstream 1510525 47663044 ~ 47711376 (-)
LOC110537700 LOC106567555 coding downstream 1563536 47626656 ~ 47658365 (-)
LOC110537699 LOC106567556 coding downstream 1924866 46911457 ~ 47297035 (-)
LOC110537714 dlg2 coding upstream 81817 49310221 ~ 49598356 (-)
LOC110537716 NA coding upstream 390164 49618568 ~ 49673217 (-)
crebzf crebzf coding upstream 452557 49680961 ~ 49688023 (-)
picalma LOC106567535 coding upstream 471832 49699388 ~ 49757964 (-)
LOC110537722 NA coding upstream 567210 49795614 ~ 49798290 (-)
G1082660 NA non-coding downstream 12149 49204923 ~ 49209752 (-)
G1081922 NA non-coding downstream 87276 49134353 ~ 49134625 (-)
G1081830 NA non-coding downstream 211348 49010198 ~ 49010553 (-)
G1081812 NA non-coding downstream 233961 48987723 ~ 48987940 (-)
G1081810 NA non-coding downstream 235069 48986603 ~ 48986832 (-)
G1082779 NA non-coding upstream 133965 49362369 ~ 49362858 (-)
G1082969 NA non-coding upstream 384743 49613147 ~ 49613816 (-)
G1082972 NA non-coding upstream 393099 49621503 ~ 49628063 (-)
G1082971 NA non-coding upstream 398822 49627226 ~ 49627717 (-)
G1081829 NA other downstream 211749 49009349 ~ 49010152 (-)
G1081813 NA other downstream 233548 48988012 ~ 48988353 (-)
G1081571 NA other downstream 316627 48901408 ~ 48905274 (-)
G1081055 NA other downstream 803017 48418421 ~ 48418884 (-)
G1082693 NA other upstream 449028 49677432 ~ 49680803 (-)
G1083278 NA other upstream 1056095 50284499 ~ 50285313 (-)
G1084224 NA other upstream 1600000 50828404 ~ 50829115 (-)
G1084908 NA other upstream 2248013 51476417 ~ 51476771 (-)
LOC110537745 LOC106567512 other upstream 2283736 51453362 ~ 51520396 (-)

Expression


Co-expression Network