LOC110537722


Basic Information

Item Value
gene id LOC110537722
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 49795614 ~ 49798290 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005035001.1
agaGGGATCAATTGTTTAGAGTACCTACTTAAAATATTTCCTTTTGACTGATTGTTGCATGAGTTAGAATTGATTGGTTTTCACTTGAAGGGGAATCATGGATTTCGATACTGGAATACTTTTATAACCAACCATTGATTTGACCGCCATCCCCGGCAGCCGTGATTCTTTGGCTAAACTGACCTCAACCATTTCCCATGCACTGTCAATGGGGTTTCTAAACCAACCCGGCTGTAATAATTCTGGAAACTGGTTAATTTTGTGGCTAGTCGGATTTCCCCATGGGGAACTGTAAACCGAAAGGTATATTTCTTCGCCCAACACCGGTCACTGAGTTAGCAAGCTGAAGTTGGCTAGTGAGTCACAGAAATGTACGTTCAGCCTATTCATTATTTCAGTCCGATTGGCCTTAAAGTAAATTAATCAGCATGGCTTAACATAGCACTGTTGGCGGTATAAACACAATTTCGCTAAACGTGTATGTAACAACATTTATTTGATTAATTTCGTTTTTGACCTCGACATTCTTGCTGGATAGACACTTTGATAGCTAACATGCGCTGCTAACTAGCTAATGCTAATGGCGCTAGCTAAACTCCTATGTTAGGCTGGACACATTGCATTTTAACAACGCTTTTCTAAAAAGTGGTTCATTGCATCCGCggtggagcccagtttcataatataTCCCAGCTGCCTGTCGTAGTTGAAGTAATCACGAAAAAGCAGGCCTTAATTTAGGGCATTTTatcaccctgccagctcctatgAATTCTATTGAGCACTGTGGTACCAACTCGCCTTCCGAACGTTCGTGTAATGTGTCCAGCCTAACATAGGAGTTCAGCTAGCGCCGTTAGCATTAGCTAGTTAGCAGCGCTAGCTATCAGTGTCTCCAGCAAGAAAGTACAACAAATGGGACAATGGTAGTTTCGCTATAGTTGGCAATGGAGACCTGCTCACGTTAAgttaaaatgtaaacaacaaatTACTCATGTTACTCTGAGGTCGTCCCATTGTTTACTATAGGGAAATGTAGGTATGGCTGTCTTATTTTGCCAAATATCTCGCGATGTGCATATTTAGATTTGTATTTTTTGTCATTTCGGACACCATGTTAATCAATATCTTTCTAATTATGTAAGGCTGGGTATTGTATCTCGTCATCAAACGCTAGACCTGAAATAGTCAGTTGCCATTTTTCCCCTACTTCCTCGCTATGCAGACAAGCACAATTGGCTCCACTGAGGTGCAGATGTTTCCTTTCTACACTAGTTATTTCAGTTTCGTCCTAAGAACAGATTGTAGTGTTAAAATAAAAATTGATACTTTTTTGGTGCCATTTAGGCTAAATCAGCTAAATTAGCTAAATCTAAGCTTCACTCCAGTCAAAACAGTCTGCGAACGTTCGATTCCATTAATTTGATATGGGCTCGCGCTAGTTTTAGCTTAGCCAACGTTCTAAAGCCGttttcagccttgggtgaattttgactcgtTCTTTTGTCCAGCCGACCTATGCGGATGTTTATCTAGTTCCCAAGAGCAGCAGACCGGTAAGTCAACTTTTCTTTCGAACTTTAATCATCTGTAAAGTTGTTTTACATGCAatcatgctagctagctatattttgaCACGTCTGCACCTGCTTCACCGGCAATGACGGGTGATGCAGGTAATTATCACATGCATACTCTCCTTCACttggggctctattcaatcacatccgcatagcggttgttttggtggtgtctgAGGTGGAACTGTATTAAAGCTGTCAAATTAACAAGCGGCTCCTGGCCTTATACCTAAACCGCACATTGCCGTTGGCGGCAGGGAGTCGCATTAACAGAAATCTCATGCATCCCTGTTTACAAGTTAGAACAGTGGAAtttgagatgtaatctacacctcgattaggctGATATAAATCCTCATTTAGTTTACTTTTGAATTTGAGCGTCATATTTATATATAACCTACACTTTTTCGTTTACGGTGTAGATTCGTGACAATGATCAAGAGCCGCTGCTTGCCGATTTGACAGATCCAACATCAGACACCGATAAAACATAAGCAATGTTGGTGTCAGCTATCGCTGGTTAACGCTTGATCTTATTGACTCTAGGCCTTATACTCATTCACTCTGTTTACTTGTATGATTATTGTCAGTTAAGAAAATTATGCCTCTTTTAGATCTGCCACCCCCAGTAGTTCAGCTGTAGTCACAGCAGTCCTCAGCTGTGGTTTTTAATTTACCAGCTGCACCAATTCTTAGTTCACTGGCCTTGAAGGTAGAAACTTTTGAGGGTTCCCAACTGGATACAGATCTGCAATGCACTCCACCACTGCCTGACAGCCTCACCCAGAAGTGCATACACTGGGCCTATCAAGACTGACAAAGCAGAGATGGGTGGGTGACAAGGAAACTTAAAAcgcaacatgcacacacacactccctctctctctgtcacacacacataatccCCAATGTAAATACATTGTAGTTTATTTTATGTATGCTCCATTTTATTTGAGGAAAATGTCTGCAATAAAGTTTGTTCACAGTTAA
>TU1232505
TATGCAGACAAGCACAATTGGCTCCACTGAGGTGCAGATGTTTCCTTTCTACACTAGTTATTTCAGTTTCGTCCTAAGAACAGATTGTAGTGTTAAAATAAAAATTGATACTTTTTTGGTGCCATTTAGGCTAAATCAGCTAAATTAGCTAAATCTAAGCTTCACTCCAGTCAAAACAGTCTGCGAACGTTCGATTCCATTAATTTGATATGGGCTCGCGCTAGTTTTAGCTTAGCCAACGTTCTAAAGCCGttttcagccttgggtgaattttgactcgtTCTTTTGTCCAGCCGACCTATGCGGATGTTTATCTAGTTCCCAAGAGCAGCAGACCGATCTGCAATGCACTCCACCACTGCCTGACAGCCTCACCCAGAAGTGCATACACTGGGCCTATCAAGACTGACAAAGCAGAGATGGGTGGGTGACAAGGAAACTTAAAAcgcaacatgcacacacacactccctctctctctgtcacacacacataatccCCAATGTAAATACATTGTAGTTTATTTTATGTATGCTCCATTTTATTTGAGGAAAATGTCTGCAATAAAGTTTGTT
>TU1232506
TAGACCTGAAATAGTCAGTTGCCATTTTTCCCCTACTTCCTCGCTATGCAGACAAGCACAATTGGCTCCACTGAGGTGCAGATGTTTCCTTTCTACACTAGTTATTTCAGTTTCGTCCTAAGAACAGATTGTAGTGTTAAAATAAAAATTGATACTTTTTTGGTGCCATTTAGGCTAAATCAGCTAAATTAGCTAAATCTAAGCTTCACTCCAGTCAAAACAGTCTGCGAACGTTCGATTCCATTAATTTGATATGGGCTCGCGCTAGTTTTAGCTTAGCCAACGTTCTAAAGCCGttttcagccttgggtgaattttgactcgtTCTTTTGTCCAGCCGACCTATGCGGATGTTTATCTAGTTCCCAAGAGCAGCAGACCGATCTGCAATGCACTCCACCACTGCCTGACAGCCTCACCCAGAAGTGCATACACTGGGCCTATCAAGACTGACAAAGCAGAGATGGGTGGGTGACAAGGAAACTTAAAAcgcaacatgcacacacacactccctctctctctgtcacacacacataatccCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005035001.1 False 2573 mRNA 0.41 2 49795614 49798290
TU1232505 False 573 lncRNA 0.42 2 49795623 49797072
TU1232506 True 543 lncRNA 0.44 2 49795697 49797116

Neighbor

gene id symbol gene type direction distance location
picalma LOC106567535 coding downstream 37650 49699388 ~ 49757964 (-)
crebzf crebzf coding downstream 107591 49680961 ~ 49688023 (-)
LOC110537716 NA coding downstream 122397 49618568 ~ 49673217 (-)
LOC110537714 dlg2 coding downstream 197258 49310221 ~ 49598356 (-)
LOC110538906 ovol2 coding downstream 567210 49221901 ~ 49228404 (-)
LOC110537723 LOC106567533 coding upstream 225 49798515 ~ 49819421 (-)
LOC110537725 LOC106567530 coding upstream 53817 49852107 ~ 49993628 (-)
LOC110537727 LOC106567528 coding upstream 206924 50005214 ~ 50016538 (-)
LOC110537729 LOC106567524 coding upstream 253482 50051772 ~ 50120821 (-)
rapgef6 LOC106567521 coding upstream 1027350 50825640 ~ 50951771 (-)
G1083064 NA non-coding downstream 7048 49788361 ~ 49788566 (-)
G1083060 NA non-coding downstream 10602 49783453 ~ 49785012 (-)
G1082693 NA non-coding downstream 117328 49677432 ~ 49680803 (-)
G1083077 NA non-coding upstream 42449 49840739 ~ 49840951 (-)
G1083078 NA non-coding upstream 43260 49841550 ~ 49841768 (-)
G1083080 NA non-coding upstream 45201 49843491 ~ 49843860 (-)
G1083088 NA non-coding upstream 75190 49873480 ~ 49874329 (-)
G1083094 NA non-coding upstream 91518 49889808 ~ 49891888 (-)
G1081829 NA other downstream 785462 49009349 ~ 49010152 (-)
G1081813 NA other downstream 807261 48988012 ~ 48988353 (-)
G1081571 NA other downstream 890340 48901408 ~ 48905274 (-)
G1081055 NA other downstream 1376730 48418421 ~ 48418884 (-)
G1083278 NA other upstream 486209 50284499 ~ 50285313 (-)
G1084224 NA other upstream 1030114 50828404 ~ 50829115 (-)
G1084908 NA other upstream 1678127 51476417 ~ 51476771 (-)
LOC110537745 LOC106567512 other upstream 1713850 51453362 ~ 51520396 (-)
G1087093 NA other upstream 3333515 53131805 ~ 53132875 (-)
G1082972 NA non-coding downstream 167560 49621503 ~ 49628063 (-)

Expression


Co-expression Network