Item | Value |
---|---|
gene id | LOC110537753 |
gene name | LOC106567505 |
gene type | coding |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048576.1 |
NCBI id | CM023230.2 |
chromosome length | 102853256 |
location | 52087532 ~ 52124400 (+) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
description |
---|
PREDICTED: gamma-aminobutyric acid receptor subunit alpha-1-like isoform X1 |
id | name | namespace |
---|---|---|
GO:0034220 | ion transmembrane transport | biological_process |
GO:0007165 | signal transduction | biological_process |
GO:0045202 | synapse | cellular_component |
GO:0005886 | plasma membrane | cellular_component |
GO:0030054 | cell junction | cellular_component |
GO:0016021 | integral component of membrane | cellular_component |
GO:0004890 | GABA-A receptor activity | molecular_function |
GO:0005230 | extracellular ligand-gated ion channel activity | molecular_function |
id | description |
---|---|
K05175 | GABRA; gamma-aminobutyric acid receptor subunit alpha |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_021624115.2 | False | 5102 | mRNA | 0.41 | 10 | 52087532 | 52124400 |
XM_021624113.2 | False | 5286 | mRNA | 0.41 | 10 | 52088127 | 52124400 |
XM_021624114.2 | False | 5081 | mRNA | 0.41 | 10 | 52088534 | 52124400 |
XM_036937770.1 | True | 4969 | mRNA | 0.41 | 10 | 52089040 | 52124400 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC110537754 | LOC106603847 | coding | upstream | 22360 | 52026941 ~ 52065243 (+) |
LOC110537746 | LOC106567511 | coding | upstream | 499641 | 51547730 ~ 51587891 (+) |
LOC110537744 | LOC106567513 | coding | upstream | 636724 | 51414096 ~ 51450808 (+) |
LOC110537742 | LOC106567514 | coding | upstream | 684350 | 51363089 ~ 51403182 (+) |
LOC110538907 | NA | coding | upstream | 788846 | 51290606 ~ 51298686 (+) |
LOC110537755 | LOC106567504 | coding | downstream | 39671 | 52164071 ~ 52232228 (+) |
LOC110537762 | LOC106567497 | coding | downstream | 679827 | 52804227 ~ 52821797 (+) |
LOC110537763 | rnf14 | coding | downstream | 712278 | 52836678 ~ 52842725 (+) |
endou2 | LOC106567496 | coding | downstream | 718719 | 52843119 ~ 52851325 (+) |
LOC110537765 | LOC106567495 | coding | downstream | 727251 | 52851651 ~ 52861272 (+) |
G1085339 | NA | non-coding | upstream | 14208 | 52072892 ~ 52073324 (+) |
G1085336 | NA | non-coding | upstream | 18052 | 52069257 ~ 52069480 (+) |
G1085332 | NA | non-coding | upstream | 31854 | 52054284 ~ 52055678 (+) |
G1085311 | NA | non-coding | upstream | 69597 | 52017672 ~ 52017935 (+) |
G1085422 | NA | non-coding | downstream | 86768 | 52211168 ~ 52211375 (+) |
G1085441 | NA | non-coding | downstream | 132120 | 52256520 ~ 52256783 (+) |
G1085744 | NA | non-coding | downstream | 140596 | 52264996 ~ 52265234 (+) |
G1085768 | NA | non-coding | downstream | 156394 | 52280794 ~ 52280993 (+) |
G1085780 | NA | non-coding | downstream | 166138 | 52290538 ~ 52290793 (+) |
G1082266 | NA | other | upstream | 2406728 | 49679023 ~ 49680804 (+) |
LOC110537713 | LOC106567542 | other | upstream | 2787185 | 49262142 ~ 49300347 (+) |
G1081353 | NA | other | upstream | 3340033 | 48746955 ~ 48747499 (+) |
G1077322 | NA | other | upstream | 6078923 | 46004151 ~ 46008609 (+) |
nrgna | NA | other | upstream | 6167271 | 45900621 ~ 45920265 (+) |
G1086237 | LOC106567502 | other | downstream | 525204 | 52649604 ~ 52657495 (+) |
G1087914 | NA | other | downstream | 1985290 | 54109690 ~ 54148962 (+) |
LOC110538908 | LOC106603872 | other | downstream | 2149906 | 54253719 ~ 54283905 (+) |
G1091217 | NA | other | downstream | 4601207 | 56725607 ~ 56726003 (+) |
G1091235 | NA | other | downstream | 4628018 | 56752418 ~ 56752947 (+) |