LOC110537763 (rnf14)


Basic Information

Item Value
gene id LOC110537763
gene name rnf14
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 52836678 ~ 52842725 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021624135.2
TTGTaaacatttatgaaaacaaaaatgttagcagtgtggttaaggtttggtttaaaatgtaagaagataaattgtagaaataggcggagtttatgactttgtggctgtgttaactagtgaaaACCAATACGTAATTTGTGGTGGCTGAAGTAAAAGGAATGTAAATGTCGGAGGACCAGGAAGCCCAGGAGGATGAGTTGCTTGCTCTAGCGAGTATTTACGATGAAGAGGAGTTTCACAGAGCCAAATCTGCACAGGGCGGTGAGATACAACTATGCCTTGAACTTCCTCCTAGTTTCAAGTTGATAGTCGATGGAAACAAGCAGACCGAATATGACATATCTTTCCTACCTCCTCTGGTGCTTAACTTTGAACTTCCTGCTGACTACCCTTCTTCCTCATCTCCGGTCTATACACTAAGTTCCAAATGGCTGTCAAGGGACCAGaTGACTTCTCTATGCAAGCGCCTGGATGGGCTGTGGGAGGAGAACCAGGGCTGTGTTGTTCTCTTCACATGGATCCAGTTCCTTAAGGAGGAGGCCTTTGCCTTCCTCGACGTCAAGTCTCCCCTGGAGGTGGTCAAGGGGGGCAACGCTCCGGTGGAATGGAAGAGGAGTGAGGCTGGTGTGAAGCGGGCGGGGAGTCTAACCGGGGAGAAGGATAAACTGGAGCCCCTGCTGGAGCTGGACCCCCGTGCTGTCCTGGTGGTTGACCCCCGTACTGATATCCTACCTCAGCTCCTGGACTTTGATGAAGCTCAGCGGCAGAAGGTGTTTGACGCCAAGGCGTTCTGCTGTGGTATCTGCTTCATGGAGAAGCTGGGCTCGGGCTGCCTGTGCTTTAAGGAATGCCAGCATGTGTACTGCAAGACCTGCATGACGGAATACTTCCAGATTCAGATCCGCGACGGCAACGTTCAGTGCCTTAACTGCCCCGAGCCCAAGTGCACCTCCTTGGCTACACCCTCACAGGTCAAGCTCCTTGTCGGGGAGGAGTTGTTTGCGCGTTATGACCGCCTTCTGCTTCAGTCCAGCCTGGATCTGATGGCTGACGTGGTGTACTGCCCTCGCCAGTCCTGCTGCCAGGCTGTGATGGTGGAGCCAGACACCACCATGGGCATTTGCCCTGCCTGCCAGTACGCCTTCTGCACCCTCTGCAAACGGGGATACCACGGCCTGTCCCACTGCAAGGTCACAGCAGATGAGCTGCGAGGCCTGCGGGATGAGTATATATCTGCCAGTGCTGAGGGGAAGAAGTTCATGGAGCAGCGCTTTGGGAAGCGGGTCATCCAGCGTGCTGTGGAGGAATCCTTCAGCAGGGATTGGCTTAATGAGAACTGTAAAGGCTGCCCTCGCTGTGGCACTAATATACAGAAGGTTGATGGCTGCAACAAGATGACTTGCACCTCGTGTAAGCAGTACTTCTGCTGGCTGTGTCTGGGCCAGCTCACACGTGTCAACCCCTACAGCCACTTCAACAACCCCTCCTCGCCTTGCTTCAACCAGCTGTTCCAGGGTGTGGATATTGATGAAGATGATGCCTTTTGGAGTGATGAAGAGGACTGATGTGCAATACCTCCCATGCGTGCTTCATTTGTATGCACTTTAACCGCCCATGGATTTAGCCAATACAATTTCTCACCATCATTGATCAGGCATTTACTTACCCAAAATACATCAGTCATTTCTGATGGTTGAATGGCTAGCGGAGAGCAATTCCAGTTAGAAGTAGGCACATTACCTTACTCCAAACAGCAGTCAAATACTCAGGGCCAGTATTTTTCTGAAAGAATACTTGTGAAGAGAGTGTGAGCGAGTGTACCAAAAACGAATGGGTTACAGTGTGTTTAGATGATTTGAACAGATAACGTTGGTATGTTTTATCAATCTCGATATGAAAAGGAAATTCAGGGATCCGGGGGTGAAATCTTTCAAtcaagaacagaggacaacatttTGGGATAATGTTTGTACAATTTAATGTCTGTCCTTTAGAACCACTTTAATCATGAGTTAACTCTCTGTATACCCGGATACCATCCAAACCATGAGCTCACAgcttgatgtaaaaaaaaaaaaaagggtgaATAAAGCTTTGCCAAATGTGACATTCATCCAATGGCCATCAAGACATGATTTTTAGACACACTATTGTCcttttttgtatgtttttgttcCTTTTTCACCAAAAGGTACACTTTATTTATCATGTAACATGATTTGTTTGAATGGGACACACTcaggaggaggctggtgggaggggtTATAGGAttatgggctcattgtaatggctggaatggaattaatacAACATGGGTTGAtacatggtttccatatgtttgatacaattccatttactccattccagctattacaaTGTGCCCGTCCTCCTATTGCTCCTCCCGCCAGCCTCCTCTGACGCACACTGTTGATTAGGTTAAATATGGCATTGTTTCAGTACAAAAGATATGTCTGTAACCACCCTGGCATTTGCTAGTTACTACCTACTCACATTATGATCTTCATTGAAACTTTTCAGAAAGTGAGGCTAATTTGGAAATGGACATCAATGTAAATCACATTCAAAATACATGTCCTGCTCTTAAAGCAGTTATATTGTGCTTTCACTTTTATCTGTTAATGTTGAAGGGGGACAGTCTTTGATATTTGCAGTAGTCCTGAATTTAAAAAGTGTTGTAATAACCATAAACATACATAAATAA

Function

symbol description
rnf14 Predicted to enable ubiquitin conjugating enzyme binding activity and ubiquitin protein ligase activity. Acts upstream of or within regulation of canonical Wnt signaling pathway. Predicted to be part of ubiquitin ligase complex. Predicted to be active in cytoplasm. Orthologous to human RNF14 (ring finger protein 14).

NR:

description
E3 ubiquitin-protein ligase RNF14

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008270 zinc ion binding molecular_function
GO:0016874 ligase activity molecular_function

KEGG:

id description
K11971 RNF14, ARA54; E3 ubiquitin-protein ligase RNF14

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021624135.2 True 2722 mRNA 0.46 8 52836678 52842725

Neighbor

gene id symbol gene type direction distance location
LOC110537762 LOC106567497 coding upstream 14881 52804227 ~ 52821797 (+)
LOC110537755 LOC106567504 coding upstream 604450 52164071 ~ 52232228 (+)
LOC110537753 LOC106567505 coding upstream 712278 52087532 ~ 52124400 (+)
LOC110537754 LOC106603847 coding upstream 771506 52026941 ~ 52065243 (+)
LOC110537746 LOC106567511 coding upstream 1248787 51547730 ~ 51587891 (+)
endou2 LOC106567496 coding downstream 394 52843119 ~ 52851325 (+)
LOC110537765 LOC106567495 coding downstream 8926 52851651 ~ 52861272 (+)
LOC110537768 LOC106567493 coding downstream 162104 53004829 ~ 53132925 (+)
LOC110537771 LOC106567489 coding downstream 487456 53330181 ~ 53419845 (+)
LOC110537774 NA coding downstream 819800 53662525 ~ 53681131 (+)
G1086161 NA non-coding upstream 292309 52544128 ~ 52544369 (+)
G1086152 NA non-coding upstream 298648 52537802 ~ 52538030 (+)
G1086147 NA non-coding upstream 300068 52536379 ~ 52536610 (+)
G1086113 NA non-coding upstream 322637 52513416 ~ 52514041 (+)
G1086112 NA non-coding upstream 323611 52512867 ~ 52513067 (+)
G1086381 NA non-coding downstream 5301 52848026 ~ 52848279 (+)
G1086390 NA non-coding downstream 27337 52870062 ~ 52870307 (+)
G1086400 NA non-coding downstream 36818 52879543 ~ 52879750 (+)
G1086404 NA non-coding downstream 42470 52885195 ~ 52885522 (+)
G1086409 NA non-coding downstream 51844 52894569 ~ 52894887 (+)
G1086237 LOC106567502 other upstream 179183 52649604 ~ 52657495 (+)
G1082266 NA other upstream 3155874 49679023 ~ 49680804 (+)
LOC110537713 LOC106567542 other upstream 3536331 49262142 ~ 49300347 (+)
G1081353 NA other upstream 4089179 48746955 ~ 48747499 (+)
G1077322 NA other upstream 6828069 46004151 ~ 46008609 (+)
G1087914 NA other downstream 1266965 54109690 ~ 54148962 (+)
LOC110538908 LOC106603872 other downstream 1431581 54253719 ~ 54283905 (+)
G1091217 NA other downstream 3882882 56725607 ~ 56726003 (+)
G1091235 NA other downstream 3909693 56752418 ~ 56752947 (+)
LOC110537831 dhx33 other downstream 4273100 57112902 ~ 57118165 (+)

Expression


Co-expression Network