LOC110537765 (LOC106567495)


Basic Information

Item Value
gene id LOC110537765
gene name LOC106567495
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 52851651 ~ 52861272 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021624137.2
TATTGACGTAACAAGCTcgcagagaaagaggggagggactTGAGCAGACAGCGTCCCAATAGTTTATGTTTCCGTTATACTTTCTGTATTGAATACATTGACAATCGCTTGTTTAAATTAAAATATTTGAGTCTGTTCATATTAGGATGGCTGAGCCGTGTGCTAGATATCAGCAGCTGCCCAATGAAGAGGAGCCAGAGGAGGCTCTCCAGGTGGCAGCTGATGCCCCACCCCCTTACAGCAGCATTGCAGAAGAAAATGCAGCTTATTTTGACTACAAAGAAAATGGGGGTTTCCCCAATCCACCATCATACAACGTGGCCACAACGCTCCCTTCCTATGACGAGGCGGAGAGAACCAAGGCTGAAGCCCTTGTTCCCTTGGTGGCTGGAAGGGATGAAGACTTTGTAGCCAGGGATGACTTTGAGGATGCAGACCAGCTGCGGATAGGGAACGATGGCATTTTCATGTTGACCTTTTTTATGGCATTCCTTTTCAACTGGATCGGCTTCTTCCTGTCCTTCTGTCTGACCACGTCGGCAGCAGGCCGCTACGGGGCCATCTCTGGCTTCGGCCTGTCACTCATCAAGTGGATCCTCATTGTCCGGTTCTCCACCTATTTCCCTGGGTACTTTGATGGGCAGTACTGGCTGTGGTGGGTGTTCCTGGTATTGGGATTCTTGCTCTTCCTCAGAGGATTCATCAACTACGCCAAGATCCGTAAAATGGCAGACTCCTTTTCTAGTCTCGCGCGAACCAGAGTCCTTTTCATCTACTAAAAGGGGAAATCTGAACTCTTCTTTAGAAAATTTCGCTATCTGGCCTCAACTCCATCACGAAAAACAGAGAGGAAACACCTCTTGTTTTGCTGCTGATAAATTGGACAAAATCATTTCTGTCTCTTGATGTAAACTAGTGGATGTTGACAATTCTGTAACTATTCAATCATTAGTGGTTTATTTCAAGTGCTGTTTGGAATCAAGTCTGTGACGTATAAATAATGgttagactaacctgtacccccccgcacattgcctcggtaccggtaccccctgtatatatcctcagtatagttattttattgttttatttttgtattattattttttttactttagtttatttagtaaatattttcttaactgcgttaagggcttgtaagtaagcatttcacggtacggtcgacacctgttgtatttggcgcatgtgacaaataaaatttgatttatatCATTTGTATTATCTGTTTAACAATGGCATGTACTGTTCCTGTTAAACAATAGGGGGCAGTCTTTGTCTTTTTCTCTGTCCTCTTTCAAAGTGTTTGATATGGAGACCGCTCGGCTCTATGCTGACCCTGTGGAACTACCCATAGAGTTATGTCTGTGAATAGGAGCATTGAGTGAAATCTATTGATGTATATGATAATGAAATTAAAGTTAGTCTTTTCAAGATGTA

Function

NR:

description
NEDD4 family-interacting protein 1-like

GO:

id name namespace
GO:0000139 Golgi membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021624137.2 True 1458 mRNA 0.43 7 52851651 52861272

Neighbor

gene id symbol gene type direction distance location
endou2 LOC106567496 coding upstream 326 52843119 ~ 52851325 (+)
LOC110537763 rnf14 coding upstream 8926 52836678 ~ 52842725 (+)
LOC110537762 LOC106567497 coding upstream 29854 52804227 ~ 52821797 (+)
LOC110537755 LOC106567504 coding upstream 619423 52164071 ~ 52232228 (+)
LOC110537753 LOC106567505 coding upstream 727251 52087532 ~ 52124400 (+)
LOC110537768 LOC106567493 coding downstream 143557 53004829 ~ 53132925 (+)
LOC110537771 LOC106567489 coding downstream 468909 53330181 ~ 53419845 (+)
LOC110537774 NA coding downstream 801253 53662525 ~ 53681131 (+)
LOC110537776 LOC106567605 coding downstream 829032 53690304 ~ 53692630 (+)
LOC100301661 LOC106567454 coding downstream 940390 53801662 ~ 53804908 (+)
G1086381 NA non-coding upstream 3372 52848026 ~ 52848279 (+)
G1086161 NA non-coding upstream 307282 52544128 ~ 52544369 (+)
G1086152 NA non-coding upstream 313621 52537802 ~ 52538030 (+)
G1086147 NA non-coding upstream 315041 52536379 ~ 52536610 (+)
G1086113 NA non-coding upstream 337610 52513416 ~ 52514041 (+)
G1086390 NA non-coding downstream 8790 52870062 ~ 52870307 (+)
G1086400 NA non-coding downstream 18271 52879543 ~ 52879750 (+)
G1086404 NA non-coding downstream 23923 52885195 ~ 52885522 (+)
G1086409 NA non-coding downstream 33297 52894569 ~ 52894887 (+)
G1086412 NA non-coding downstream 38072 52899344 ~ 52899557 (+)
G1086237 LOC106567502 other upstream 194156 52649604 ~ 52657495 (+)
G1082266 NA other upstream 3170847 49679023 ~ 49680804 (+)
LOC110537713 LOC106567542 other upstream 3551304 49262142 ~ 49300347 (+)
G1081353 NA other upstream 4104152 48746955 ~ 48747499 (+)
G1077322 NA other upstream 6843042 46004151 ~ 46008609 (+)
G1087914 NA other downstream 1248418 54109690 ~ 54148962 (+)
LOC110538908 LOC106603872 other downstream 1413034 54253719 ~ 54283905 (+)
G1091217 NA other downstream 3864335 56725607 ~ 56726003 (+)
G1091235 NA other downstream 3891146 56752418 ~ 56752947 (+)
LOC110537831 dhx33 other downstream 4254553 57112902 ~ 57118165 (+)

Expression


Co-expression Network