LOC110537771 (LOC106567489)


Basic Information

Item Value
gene id LOC110537771
gene name LOC106567489
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 53330181 ~ 53419845 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021624146.2
TGTTCCTCCGACCGCTAACAGCACAATCTGAGCACTGGGGGACACAGGACAGGACTCATCAGGGCGGAGTGGATGCAACCTCTGTGAAGTTACTCGTGTTCAAAGGAAGTTAGAGATAAAACGCCGGTGATAACGATATCTTTCCCTTTGGACTTTAGAAGTTGTTGTGAGGAGTTTTTCTATTGaatatgttgtagatatattTGTGCATTTATGTAGAGTATTGGGCCATCTATAAGCTATTCATTTTGCTCTAGCAAACAGAAGCAAGGCAGCTCATGTTCCGTTTGACAGCGTTTCTATGTGATCTGGCCGCGGGGGTTCTCATGAACCTCAGTCATTTCCCTCGGCAATGTTTTTCTCCCATGGGCAATGGAGGCAGAGCAACTGATGCACGCTGTTGTGGTACACACCTTTGATGCGTCTGTTAATATTTTTGTAGTCTCAAAACACTGTTTTTCTGTTATCTTTTGAGGTGGGTTTCGTGGACATCCACCATTATGCTATTTTTCTAAGACTGCAGCGACTGGTAGGTGAATGACTGACTTTATAAGAATTATTTGTCATAATTTATGTTCAGTGTGTTTAATTTTACATTTTAAACACAAATATACCTTGTTTTAGTACAAGTAAAATAGCAACTTTTGGACATCAATCTACCGTTTCCATCTAAAATTCGGTGGAGTTTTTAGTCAATCATGACGGAAACAATGGCATTGAGTGGAAACTGTAGGACTAACCCTACGTCCAAAGACCAAGGATCTGTTCAGAATAGTTTCCCAGATGTTGTAGAATTAAACGTTGGGGGACAGGTATATTACACACGTCATGCTACGTTAGTAAGCACCCCGAATTCCTTGCTGGGAAAAATATTCTCACCCAAGAAAGATGCCACTAACGACTTGGCGCGGGACCCTAAGGGACGCTATTTTATCGACAGAGATGGATTTCTATTTCGATATGTTCTGGACTTCCTCAGAGACAAACAAGTTGTACTGCCCGACCATTTTCCAGAGAAGGGGAGGCTTAGGAAAGAGGCGGAGTACTTTCAGTTGTCAGACATGGTCAAACTATTGACCCCCGAAGATTTAAAACACAGTCCAGACGAATACTTCCACAGTGATTTTGAAGATGGTTCTCATGGCAGCGACCACAAGATGTGTCCGCCGTCATCACTGGTCCCGGCGGACAGAAAAAGTGGGTTCATTACAGTTGGTTACAGGGGCTCTTGCACAGTGGGCAGAGAGAGTCAAACTGACGCCAAATTCAGAAGGGTCCCGCGGATTTTGATTTGTGGGAGGGTCGCGTTAGCCAAAGAAGTTTTTGGCGAGACCTTGAATGAGAGTCGAGACCCAGACAGGACACCGGATCGATATACTTCCAGGTTTTACCTGAAGTTCAAACACCTTGAGAGATCATTTGACATCCTGTCAGAGTGTGGTTTCCAGATGGTTGCCTGTAACTCTTCAGTCACAGCGTCCTCCGTGAATCGACACACAGAGGACAAGATCTGGTCAAGTTACACTGAATACATCTTCTATCGTGGCACCTCTCGGTGGTCTTCCCCGCCCTGCGACTGCTGCTGCAAGAACCACAAGGGAGAGGGCGAGAGCGGCACCTCCTTCAACGAGCTCTCCACCTCAAGCTCCGAGAGCCAGTCAGAGGCCAGCTCACCCCACGGCACCGTTATCTGTGGGCCGGTGAGCCAGCAGTCCCACGTCCATGTCCAGACCCTGGACCGGCCGCTGAAGAAGGGCCCGGTGCAGATGCTGCAGCAGTCAGAGCAGCGCAGGAAGAGTGATCTCCTCCGAACACTCACTGCCAGCTCCCGAGATACCAGCACCTGCAAGAAGAGGCCGGCCAAGGAGAAGATGACCATTgaggaggagctggagaagtGCATCCAGGACTTCCGCAAGATCAAGATCCCTGAGCGCTTCCCGGAGAGGAAGTACATGTGGCAGGCAGATCTACTAAGGAAGTACCGTCTCTGAGAGGGATCCAGTTAAAACACTTAGGCATCACAGAGACAGCAAAAAAACAGGCATAAAACCATGACTGTTTAGctaactgtatgtgtgtatatatgtattggCACCCTTCCAATTTACTTGAATAATTCCCTATTtctccacaccttgttattggGTTTTCAACATTGCAGAACTTAAGTTAATTAACTTACAATTTAAATGTACATTTATTGGCACCCTTGAGCTACTACTTCGTTGCACACCCTTTGGCCAAGATAGCTGCCAACAAATGCTTCTTGTAGCCATCAATGGGCTTGCTGCACCTTTCTACTTCAACATTTTTGGACACTGGGTTGAACTTTGTACTCCATCTGCTGATTTCACAATGTCTTGCATACATTCAACGTCCCCAGAGGCAGCAAAGTAACCCACAGCATTATCGAACCTGCCCCATGATTGATCGTAAGGAGGGTGTTATTTTCTTTAAATGCTTCATTTAGTCATTGGTAAACATAGGAAGACCCCACTGCTGAAGGAGACACAAAAAAGCCTGTTGAACTTCTCAAAATAACTACCGAAACAAGCTTAAATCCTGGGGAAAATGTTCTGTGGACCAATGAAACTAAATTTGAGCTTTAGCAAAACAGAAGAGCGCTGTGTTTACTGATGACAAAATGAAAAATTCAATGAAAGACCCTCCCCTACAATCAAATATGGGGGAAGTTTGATAATGCTGTGGGGTTCCTTTCCTGCCTCTAATACTGGAGTCCTTGTTATGCGCAAGGCATCAATAAATCTTCAGATGATCAGGGGATTTGGAGTCCAATGTTCAACCCAGTGTCCAAACTGGGTCCCCATTGAAGGTTGTGGATCTTCCTgcaagacaatgaccccaaacacacatcaAAAATCACCCAGGAATGGCTCAAGAAGAGATTCTTGACTGTTCTGGAGTAGCCAGCGAAGTCCAAATCTAAGTCACATTGAAAACCGATGGTGAGATCTGAAAACAGCAATTGGTGGAGGCCACCCCTCAGAAATGTAAGAACCACAGCAGTTTGCTTCTGAAAAGTGGGCCAAATTGCCAGGAGAAAGTTGCAGCAAGCTCAATGACGGTACAGGAAGTGTTTGTCTGCAGCTTTCTTGATCAAAGACTTTGCAACCAAGTACTAGCTccagggtgccaatcattttgtccatgccatttgtctttattttctcaATTAAAATTGTAAACATaagtttacaaaaaaaaaatggttttgttTGTGTTGAAAATCCAACAACTTATTTTAGAATTATTTAAGAAAGGTCCAcgggtgccaatatatttggtcgcaactgtatgtatgtatgtatgtatgtatgtatgtatgtatgtatgtatgtattgatgCTCATCGCCACTGCCTCAGTGTCTACTGTATGTCTTATGCTTTAGGTTCTGGATGACTGATCTCAATGGAATAATGGCAATGGACAAAAGACATCTCTTTCTTCACCAACTGCTTCCTGTATGCTCAAAGGGTATATCTGACTGCACAGTTTTATCCACAATCTTTTGAAAGCACTAAAGAGCACAATTGGTGTGTGAGAGATTGTTCTACACACACTGCTGATTTTTGCATGCAGATTGCACAGAAATCGAAGATACGTGTGTATCAGAATGATAAATGATTCATGCTGTCCCGATAATGCACTTTCTAAAAATACCTGCTGCCAGAGCGGAGGGGATGAATAGCTTCTTTGATTTCAACACTTTCAGGAACGCAGGCAACTCCAGAGGAAGTATgggctttttttggggggggaatttGAAAAACACCGAAAGATACTGTATATCAAAACAGCTTTCAGATGGAAATGGGAAGGGATACAGATGAAGGTGTTCCTTAAGGGGTGATGAAGGATGGGTTTGTTTTAATGAGATTGAAGTCAAACACAAAGAAACACCAATGACTGAAAAGAGGGAGTAGTCCTGTGCAAGTGCTTTCCCCAAAAGGTTAACTACAGTTACAGCaggtgttcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagagagatagatcAGGGGCTTATTTCAACAATGAATGTGTGACATGAGTGCACAGGAGAGCAGACAGGATAGCATTGCTGAACATCCCATGACAGATTGATGTTTTCTATCGTAGTTGTTGCCATTGTGGTCAATAGATAATGATTATTAGGTGCTGGGGTACATGGACAAGGGTAATAGACATGGTTGATGACATCCCTGCAGATATTGATGAGACTTGTAGGTTATTGATGAATATACGCTGCTCTTGTTTTCACTGAATACCACATCTAAATATTGTTTGTTTTCTGTATCCTTACATGCCTTGGTGAGGATCAAAGTACa

Function

NR:

description
BTB/POZ domain-containing protein KCTD16-like

GO:

id name namespace
GO:0051260 protein homooligomerization biological_process

KEGG:

id description
K21918 KCTD8_12_16; BTB/POZ domain-containing protein KCTD8/12/16

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021624146.2 True 4411 mRNA 0.44 2 53330181 53419845

Neighbor

gene id symbol gene type direction distance location
LOC110537768 LOC106567493 coding upstream 197256 53004829 ~ 53132925 (+)
LOC110537765 LOC106567495 coding upstream 468909 52851651 ~ 52861272 (+)
endou2 LOC106567496 coding upstream 478856 52843119 ~ 52851325 (+)
LOC110537763 rnf14 coding upstream 487456 52836678 ~ 52842725 (+)
LOC110537762 LOC106567497 coding upstream 508384 52804227 ~ 52821797 (+)
LOC110537774 NA coding downstream 242680 53662525 ~ 53681131 (+)
LOC110537776 LOC106567605 coding downstream 270459 53690304 ~ 53692630 (+)
LOC100301661 LOC106567454 coding downstream 381817 53801662 ~ 53804908 (+)
LOC110538908 LOC106603872 coding downstream 833874 54253719 ~ 54283905 (+)
ppp2r2bb LOC106567445 coding downstream 939428 54359273 ~ 54460602 (+)
G1086881 NA non-coding upstream 38872 53290715 ~ 53291309 (+)
G1086710 NA non-coding upstream 144163 53139050 ~ 53186018 (+)
G1086705 NA non-coding upstream 327951 53001922 ~ 53002230 (+)
G1086704 NA non-coding upstream 328347 53001524 ~ 53001834 (+)
G1086649 NA non-coding upstream 363834 52966086 ~ 52966347 (+)
G1087247 NA non-coding downstream 29089 53448934 ~ 53449162 (+)
G1087248 NA non-coding downstream 30826 53450671 ~ 53450937 (+)
G1087269 NA non-coding downstream 45486 53465331 ~ 53465530 (+)
G1087286 NA non-coding downstream 54872 53474717 ~ 53474935 (+)
G1087297 NA non-coding downstream 61696 53481541 ~ 53482014 (+)
G1086237 LOC106567502 other upstream 672686 52649604 ~ 52657495 (+)
G1082266 NA other upstream 3649377 49679023 ~ 49680804 (+)
LOC110537713 LOC106567542 other upstream 4029834 49262142 ~ 49300347 (+)
G1081353 NA other upstream 4582682 48746955 ~ 48747499 (+)
G1077322 NA other upstream 7321572 46004151 ~ 46008609 (+)
G1087914 NA other downstream 689845 54109690 ~ 54148962 (+)
G1091217 NA other downstream 3305762 56725607 ~ 56726003 (+)
G1091235 NA other downstream 3332573 56752418 ~ 56752947 (+)
LOC110537831 dhx33 other downstream 3695980 57112902 ~ 57118165 (+)

Expression


Co-expression Network