LOC110537776 (LOC106567605)


Basic Information

Item Value
gene id LOC110537776
gene name LOC106567605
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 53690304 ~ 53692630 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021624154.2
GCCCAGTGGGACATGCCTAATAGGCCCAAACGTTTTGTTTCATGGGCCATTTAATTGCGTTCACTTCCAAGCGCGCATCACGCTTGCGCACAGTACCTAGGCCATTCCCATGATTTGTAACTTGTAAGTTGAGTAAAGGGgcaggtggggggagagagagagagagacaaaccgGGAGGTTCTGCCAATTGAAATAGCTCAGTAACAGCAGCGAGCCAGAGAACCGAGCCTGCCTCTATGTCAGGGCCACTTACCTGCAAGGTGCGCAACGAAGATGATGACCATGAACGGCAAGCAGCATTTCTCTATGCACCCGGTGCTGCAGGAGCCCAAATACTCTGGCCTGCACGCGAGTTCGGAAGGCATGCGCAGGGTGTGTCTGCCTGCCCCGCAGCTTCAGGGCAATATATTCGGTTGCTTTGATGAGAGTCCACTGGCACGCGCGGAAGCTCTGGCGGCTGCTGACATTGTCTCTCACGGCAAGAGTCACCCTTTCAAGCCTGACGTGACTTACCATACCATGAGTAGTGTCCCCTGCACCCCCAACTCCTCTACGGTGCCCATCACCCACTCCACCACCCTGacccctcaccaccaccaccaccacctcaaccagaGTTTGGAGGGGGATCTTCTGGATCACATCTCGTCCAGTCTCTCTGTGAGCGGGATGGGGGCTCCGGATTCCTCTATGATGGCCACTCAAGCCCACCAGCACCACCTCCAGACCATGGGTCACCTTCACCAAGCTATGGGCATTGGTCATCCGCACTCATTGTCTGTGCACAACGGAATGTCGTGTGTCAACGACGTGGAGTCGGATCCTAGAGAGCTGGAAGCCTTCGCTGAGCGGTTCAAACAACGGAGGATAAAGCTCGGGGTGACCCAGGCGGACGTTGGCTCAGCTCTCGCCAACCTGAAGATACCTGGGGTGGGCTCTCTCAGCCAGAGCACTATCTGCAGGTTCGagtccctcaccctctctcacaaTAATATGATTGCGCTAAAACCTGTCCTCCAAGCCTGGCTCGAGGAGGCTGAGGCTGCTTACCGGGAGAAAAACAGCAAGCCAGACCTTTTCAATGGCAACGAACGCAAACGAAAACGCACGTCGATAGCCGCACCTGAGAAACGATCTTTGGAGGCATATTTTGCTATCCAGCCCCGTCCCTCTTCGGAAAAAATTGCTGCAATTGCTGAAAAACTGGACCTTAAAAAGAACGTAGTTCGTGTGTGGTTTTGCAACCAACGGCAAAAACAGAAAAGGATGAAATATTCTGCTGTGCATTAGTTCAAATAATGCCTAAAATACGACATTTTGAAGAGATAACGGGGATCTATCAACATCTCATGCCTGACTGGAATTTACTACTGAGACTCTATAGGATTTATTTAAATTTCAATTATTTCGTTCACTTTTTTTGTCCTGTTGTTTAGTTTGGAATTAAACGTATCGTGCTAAAGGTCTCTTGGAGGAAATTTTCGTTGTTGATTTTATGACTGCCTATGACACCTCTTCAATCACAGAGCTAAACTATAGGGCCTAACAAATAGAGGGAGAAAATGACTTCTCTCTCGTGTGATATGTCCTGTTGAATGCTCATAAAACCTGTTAGTTGTTTGGACAATTTAATCAATTACACTAACCATTTTGACGTTTAGGATTCATATTTAAGATGGAATGAATGTGTGTTCACTGCATAGGGGTAACACAACCACCCAAAAATGCTAATAAATGTGCTCTCTTTGTGACCTAGCTGAACTTTATTTACAGTTGTGTGTAAACGAGGCAAATACTATTCACATTATTTATGACGCAACACGAGTTGATTTTTTTTAATAGGCTAATTTTAAATAAGGCATGTCAAACCGGCATATTTTGTCATGGACTATTTTGATGTGAAAAATGTAAAACAGTTTGGAGTATCACTGAAATACTATGAGTATTTTTCTTCACTCTTGGATTTCACTTGACAAAATGAGTGAAGTTCAAACTTCATTAATAAATCATTGAATATTTTCTCAAATTCCATTGAA

Function

NR:

description
POU domain, class 4, transcription factor 3

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007420 brain development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09366 POU4F, BRN3; POU domain transcription factor, class 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021624154.2 True 2037 mRNA 0.46 2 53690304 53692630

Neighbor

gene id symbol gene type direction distance location
LOC110537774 NA coding upstream 9173 53662525 ~ 53681131 (+)
LOC110537771 LOC106567489 coding upstream 270459 53330181 ~ 53419845 (+)
LOC110537768 LOC106567493 coding upstream 557379 53004829 ~ 53132925 (+)
LOC110537765 LOC106567495 coding upstream 829032 52851651 ~ 52861272 (+)
endou2 LOC106567496 coding upstream 838979 52843119 ~ 52851325 (+)
LOC100301661 LOC106567454 coding downstream 109032 53801662 ~ 53804908 (+)
LOC110538908 LOC106603872 coding downstream 561089 54253719 ~ 54283905 (+)
ppp2r2bb LOC106567445 coding downstream 666643 54359273 ~ 54460602 (+)
LOC110537791 LOC106567438 coding downstream 1187043 54879673 ~ 54888634 (+)
LOC100136153 LOC100136153 coding downstream 1354530 55047160 ~ 55052488 (+)
G1087459 NA non-coding upstream 67184 53622389 ~ 53623120 (+)
G1087458 NA non-coding upstream 68181 53621834 ~ 53622123 (+)
G1087449 NA non-coding upstream 79035 53611064 ~ 53611269 (+)
G1087361 NA non-coding upstream 82456 53543187 ~ 53607848 (+)
G1087312 NA non-coding upstream 196413 53493678 ~ 53493891 (+)
G1087512 NA non-coding downstream 36944 53729574 ~ 53730386 (+)
G1087514 rad50 non-coding downstream 47874 53740504 ~ 53751607 (+)
G1087637 NA non-coding downstream 100634 53793264 ~ 53793527 (+)
G1087649 NA non-coding downstream 114769 53807399 ~ 53809011 (+)
G1087652 NA non-coding downstream 117569 53810199 ~ 53810423 (+)
G1086237 LOC106567502 other upstream 1032809 52649604 ~ 52657495 (+)
G1082266 NA other upstream 4009500 49679023 ~ 49680804 (+)
LOC110537713 LOC106567542 other upstream 4389957 49262142 ~ 49300347 (+)
G1081353 NA other upstream 4942805 48746955 ~ 48747499 (+)
G1077322 NA other upstream 7681695 46004151 ~ 46008609 (+)
G1087914 NA other downstream 417060 54109690 ~ 54148962 (+)
G1091217 NA other downstream 3032977 56725607 ~ 56726003 (+)
G1091235 NA other downstream 3059788 56752418 ~ 56752947 (+)
LOC110537831 dhx33 other downstream 3423195 57112902 ~ 57118165 (+)

Expression


Co-expression Network