LOC110537796 (LOC106567431)


Basic Information

Item Value
gene id LOC110537796
gene name LOC106567431
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 55257434 ~ 55270161 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021624187.2
tcgaagaagAACCCACTCTAGCAAACGAACCCAGCTTTGCCCATCGCTTGTCTGTCTGGAAAGCCTCCGCAAATGAAAACTTGTGGTGGTGGGGAACGACCCCGCCCACAGCCGACGGTGTGCCCCTGCAAGTGGTTTATCTCCACAGGTCTGGCTTTGTTCTGCTGTAATTGAATGTAACTAGCTAACAGAGTCTGAATAATATGGCCGTGCGCTGTCTTTTCTTGGCTCGGAAAAGTCTCAACTGCGCCTGCAGATTACAACTATTTTTGTCGAATGATCACAGGGCTTTGATTGGCCTGTACAGCACAGCGGCAAAGCATTGGGGAACAGGTGATAATTGCAATGGTGATGACACCACAGATGACTCCGGCCATGCGATGACCAATGTGAAACTGCTGGAGATGAGGGCCAGCAAGCTGGAGGAGCAGGTTAGGGAGCTCACGGAAAGATACAAAAGGGCCATGGCTGACTCTGACAATGTTCGAAAAAGAACTCAGAAGTTTGTCCAAGACGCCAAGCTTTTTGGGATCCAGAGTTTCTGCCGTGAACTGGTTGAGGTGGCTGACCTGCTAGAGAAGACAGACAACCTGCAGGAAGAGGAGGGCCAGAGGCTGGCTCAGGTCCAGGACAGGCTGCAGGGGATCTTCACAAAGCACGGCCTGAATAAGATGAGCCCTGTTGGGGATAAATACGACCCTTACCAGCATGAGATAGTGTGCCACACTCCTGCTGAGGGAGGGGAGCCCAGCACCGTTACTGTAGTGAAACAGGATGGGTACAAGCTCCACGGACGCACCATTCGTCATGCCCAGGTGGGCATCGCTGTGATGAAGCAGGAGCAGGACTAGGGCTTGTGCTAGTCTCTGCCCTCGCTGTAGTACTCTACTGTCTGCACCTTACAGTTCTAGCTTTGCAGCAATCCTTTGTTTTTGAATGATTTTACTGTTTTAGTGGGTTGTTCCAATTTGGTTAAGTTCTCATTATGTACAGTCATGCAAATAACAACTTATTTAACCCTTTTTCTATATTCTACAATCTGAAAATAATGGGCTTGTTCACATTCTTCTAGAATATAATCATTTTTAGATTGTGCCTAATCATGTGAATGTGTTAGTGTTTTCCATAAGTGCCGGTCGTCGGCTAAATAGCCGATAAGACTCATTGTAAGCCGGCTACTTCATAAACTAACTAGGCTTTTAATTTAGAAGTTTCAATTCGCTAGTCAGAAAAGTCGGTATAGCCTTCTCCCACTTGAATGAATGACATGCACCTTCTAGTGATGTATTGATAGGACAGGTACCTGTCAGTCAAAAAGTGAGCAATGACAGGGAAACTGATGGTTTGTCCCTCTGCTGTCTGTCCCAGCTCTCAATACCTATTATTTTTTTGTATACTGTGGTTGGCTGCAGTCTAATCTTTTCACGGAGGAGGGAGAGCATGATGCTTATTTTTCCATCTCCTGTGAGTGAATTAACACATCCCATATAAAGTGGTAACAATGAGTTGAAATCCACTTATTGTTTTATGGCACATTCATTTTTCTTTCGCGTGTTTCATAGGCCAATACAGCCACGGAGTGAGGCGCGTAGGCTGTTTACTGTGCTTTGATTGACGACCGAACTGCAAGTGTTTTACTAGTTTATAAAAGGTGTCGAACTGACGGAATAAAGTCAATCTCCTATATCCCTTCACTATTCATAAATAATACAGGGTAGTTATATGTCCATTGTATCGCATCGGGTCAAAGAAACAAAATATCTTGTTTTCTATTTTTCCTAGGATTCGTAGCCCATGACAAGACTTGCCAGTGTAGGGTCTTTTTGAATGGATCTGTTTGGTGAACGGAAACAAATCGCTGCCTTTCTTTTgatcctatcagtatcgacacatgcTCCAACGACACACTTGGCGAATGTTCTTTCTGCGTGGTATTTTGGGAAACGTTACATCTTTGGTTATTGTGGGAAAGATGCATAGTTAAAACACACGTAAGCCTTTTGTTCCTTTGGGAAACCGAGCCCACTATTAACGTAATTTAGCTGTGTATATTGGATTGAATCAGGACATTAGAATGTACCAGAGGCCACCAAAATAGCTTGTTTTGTCAAAAAAAAATCTCAGGGGGCATGCCCACCTTGACCTCTCAGGCCCGGATCTCCCTGGCTGGCTGCTTTTTCTATTTGGCTGGCTACTCCATGTGCTTATGGAAAACACTGGCGTTAGctattttactagcatttaaagaTATGTAAAGGTACTTGAGGATATTGTTATACTGCATATTTGCATAAGACCTGGTTGAGGAAAACATTTTTGTTTACTAATGTGAATGGAAGATAGGTTTCCTTTAAGGACCCCTTATAATACTGTGAACGTCTCTGGTTTCAGGTCCACATACATTTCTCCCACATTATTATGTGGACTGTGTACATTTCTAGAGGTCACATTAATCACGCTGCACTTcggaattgttttgttttttctgtATGTGAGCAAGTAAGTAATTAAGTTCTTGACGTTTGAGATAATCTGTGATATTAGAGGATGGGATGGTTACGTAGAATGTGCTGTTACCTGTAATTGTCCCTTATGATGAAGGTGGCACCTTTTACATTGACAATGTTGGGATTTATGTATTTATATAGACAAATGTTTAACATTACCCACAGAGTATTGTGTATGATGCAGCTACGAAATAGGTTCAGTTAAAGCCACTTTTAAGAAGGATCTTTGAGCCTTTTAAAACATATAGATAGTATGGATAACATTTTCTATCAAGTCATTTTGCCTATAAATGAAGCACCACACATGTGTGGTTGAGAAGTTATGGTGTTCTCTAACAAACTATTTTGCTTTCAGACTACCACAGTACATCACATTATTGCCTTAAACAATTTTTCCAATACATTTATTTTCACTTGAGTTTAATAATTTGAAATGTGGAGGTGGGTTCTGCAAGGTGATCCATTTTTAGATTTGGAAAAGGGAAGTTTGAAGCTAGCCCTCAAGTTGGAAGAAGAGAACACCAGGAACAGGACATTTCTTGCTTGTCGAAAAGGGTAGAAAGATTTAGTTTTTCTGAAGGCCCGGTGGTAGTGAAGATCGGTAGTCCTACTCCGCAGCCTGAGTATCAAACATTATTTGTGAAGTGGACTTTGtcatgtttccatccacagtttttatgcaagtaaagtcataccgtatatatatattttttaaatgacagctgtgatggaaacaaaGTTTTGGTACAATTTTAGAAGGCTGACCGATAGTGTTtgtttgacatggtgggatctttgtCTGTCaaattaattatgtgagaaatgtCGGTGGAAACACCTTTTGTgtgcaaatatttatataataactgtcatatcaaagtaaacttggagtgACATAATATGGTGTGTGGTACTATTAGGCTGATGATTAcataagttatgaacttcacagggtagataaagtgcacagtgatgagtTTAATGtgcctttccaataaatattgagggtcttattctggtgacatgataatcaa

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K03687 GRPE; molecular chaperone GrpE

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021624187.2 True 3541 mRNA 0.41 4 55257434 55270161
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110537794 afap1l1 coding upstream 9575 55209730 ~ 55247859 (+)
LOC110537795 ablim3 coding upstream 47802 55065121 ~ 55209632 (+)
LOC100136153 LOC100136153 coding upstream 204946 55047160 ~ 55052488 (+)
LOC110537791 LOC106567438 coding upstream 368800 54879673 ~ 54888634 (+)
ppp2r2bb LOC106567445 coding upstream 796832 54359273 ~ 54460602 (+)
LOC110537797 nola2 coding downstream 11570 55281731 ~ 55285435 (+)
LOC110537800 LOC106567427 coding downstream 105860 55376021 ~ 55398512 (+)
LOC110537801 LOC106603903 coding downstream 128814 55398975 ~ 55413298 (+)
LOC110537802 LOC106603906 coding downstream 181433 55451594 ~ 55455336 (+)
adra1ba LOC106567426 coding downstream 330191 55600352 ~ 55616323 (+)
G1088894 NA non-coding upstream 51789 55189750 ~ 55205645 (+)
G1088887 NA non-coding upstream 60494 55193535 ~ 55196940 (+)
G1089056 NA non-coding upstream 142921 55114194 ~ 55114513 (+)
G1089013 NA non-coding upstream 229546 55027664 ~ 55027888 (+)
G1089011 NA non-coding upstream 232361 55024808 ~ 55025073 (+)
G1089159 LOC106567483 non-coding downstream 54448 55324609 ~ 55325524 (+)
G1089196 NA non-coding downstream 115997 55386158 ~ 55387520 (+)
G1089206 NA non-coding downstream 145165 55415326 ~ 55415809 (+)
G1089209 NA non-coding downstream 150710 55420871 ~ 55425203 (+)
LOC110538908 LOC106603872 other upstream 976713 54253719 ~ 54283905 (+)
G1087914 NA other upstream 1108472 54109690 ~ 54148962 (+)
G1086237 LOC106567502 other upstream 2599939 52649604 ~ 52657495 (+)
G1082266 NA other upstream 5576630 49679023 ~ 49680804 (+)
LOC110537713 LOC106567542 other upstream 5957087 49262142 ~ 49300347 (+)
G1091217 NA other downstream 1455446 56725607 ~ 56726003 (+)
G1091235 NA other downstream 1482257 56752418 ~ 56752947 (+)
LOC110537831 dhx33 other downstream 1845664 57112902 ~ 57118165 (+)
LOC110537841 mtmr4 other downstream 2629310 57893341 ~ 58071571 (+)
LOC118937686 NA other downstream 2945994 58216142 ~ 58222215 (+)

Expression

LOC110537796(LOC106567431) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 40.
End of interactive chart.

LOC110537796(LOC106567431) Expression in each Bioproject

Bar chart with 21 bars.
LOC110537796(LOC106567431) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
End of interactive chart.

Co-expression Network