LOC110537797 (nola2)


Basic Information

Item Value
gene id LOC110537797
gene name nola2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 55281731 ~ 55285435 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021624188.2
AAAATACATGCGTGTCGGAAACACGTCGCAACTACCGGAAACCTTTTTAGGCAGCACGTGTGTAGCATTTTTTTTCCCCTTGCAAAGCACGCTGCAAACAGCAAGCAAACGTTTTGTTTAATGTTATTTGTTTAATCGAAAACATGACAAAGGTAAAGAAGGAAAAGGCCATCAAGGAGGATGCTGGAGCGACGGAAACCGGAGGGACGGAGACCGGAGTGACAGAGAAATCGTATCTAGAGTTGATCGCAAACATTAACCCAATCGCGAATCCACTTGCCACCAAGAAGCTAAGCAAGAAACTTTACAAATGTGTAAAAAAGGCATCCAAGCTCAAACAAATTCGCAGAGGAGTGAAAGAAGTCCAGAAGTTCATCAACAAAGGAGAAACTGGCATTGTGGTGTTGGCTGGGGATACTCTTCCAATCGATGTTTACTGCCATCTACCAGTCATGTGTGAGGACAGGAGTTTGCCATATGCCTACATTCCCTCAAAAGTGGACCTTGGGTCGTCTGCTGGCTCAAAGCGGCCCACCTGCGTCATCATGATCAAATCTCATGAGGACTATAAGGAGGCCTATGATGAGTGTTTCGATGAGGTTTCTGCCCTGCCTAAACCCCTCTGAACCATGTCACTGGCTAGTGGACTCAGATGGACAGGCAAACCCCTATGGTATCTGAGAATGTCTGGCTGTAGGCAGAATTAACGAGTGAGTGAAATGGACTTTCATACTTGAGCCAAGCTACAGGGTGTTGTAGTATATCTCGCTGTGTACGTTGAACCGGGAATATCATACACTAGCAGTGATCCCCGTAAAATGTCAACAGGGCATAAGGTAGATGACACCCCCATTCTTTTGGTGTTAAGTATATGCAGTCTTAACTGTAGCTGGACATAACTTTATTTTCCTCATTCTGTGGGAGCCATGCATTGTCTACGGCCAAGTACATTTGGAAAAATCTAGTGTGTAACTGTTGTGATATAAATGTTGTCGCTACTATGGCTTGCATTGTTTTAAAACATTTGTCATTTAAATATGAAAAGAAGTCTGCACCGACTGATTCTGCAGTACTATATTGTGACCAGCCTCTTTGTATTTGAATGATCAGGATTAGGTTACAGATAATATGCTGAGATTATCTCGTGTGTACTTTTTTGTTCGCTTGAACAGACAGTTCTAATTGAGTGACCACATGGGACTACAGGATGCCTGCTCAGTTAAACATGAAATCATTTCTTGCAATCCCATTCTCATTGTAGTTGTGAACTACTGTGTCATATATCTCCTACTTTGAAATTTGGTAGGTAAAGTTTGATTCATTGTTTGTCTTGTGTTTTTTACAGGCATATAGACATTTCCTTTTGCATAAAGGTTATTTTGATTTTGTTTTGAGGAAGGTAAATTAGTATGTGATGCAATGCTGTATTGATGCAATAAATACTTGTTTCTTTTGTAAA

Function

symbol description
nola2 H/ACA ribonucleoprotein complex subunit 2

NR:

description
H/ACA ribonucleoprotein complex subunit 2-like protein

GO:

id name namespace
GO:0031118 rRNA pseudouridine synthesis biological_process
GO:0019013 viral nucleocapsid cellular_component
GO:0005730 nucleolus cellular_component
GO:0005732 small nucleolar ribonucleoprotein complex cellular_component
GO:0030515 snoRNA binding molecular_function

KEGG:

id description
K11129 NHP2, NOLA2; H/ACA ribonucleoprotein complex subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021624188.2 True 1459 mRNA 0.41 4 55281731 55285435

Neighbor

gene id symbol gene type direction distance location
LOC110537796 LOC106567431 coding upstream 11570 55257434 ~ 55270161 (+)
LOC110537794 afap1l1 coding upstream 33872 55209730 ~ 55247859 (+)
LOC110537795 ablim3 coding upstream 72099 55065121 ~ 55209632 (+)
LOC100136153 LOC100136153 coding upstream 229243 55047160 ~ 55052488 (+)
LOC110537791 LOC106567438 coding upstream 393097 54879673 ~ 54888634 (+)
LOC110537800 LOC106567427 coding downstream 90586 55376021 ~ 55398512 (+)
LOC110537801 LOC106603903 coding downstream 113540 55398975 ~ 55413298 (+)
LOC110537802 LOC106603906 coding downstream 166159 55451594 ~ 55455336 (+)
adra1ba LOC106567426 coding downstream 314917 55600352 ~ 55616323 (+)
ttc1 LOC106567425 coding downstream 339926 55625361 ~ 55643340 (+)
G1088894 NA non-coding upstream 76086 55189750 ~ 55205645 (+)
G1088887 NA non-coding upstream 84791 55193535 ~ 55196940 (+)
G1089056 NA non-coding upstream 167218 55114194 ~ 55114513 (+)
G1089013 NA non-coding upstream 253843 55027664 ~ 55027888 (+)
G1089011 NA non-coding upstream 256658 55024808 ~ 55025073 (+)
G1089159 LOC106567483 non-coding downstream 39174 55324609 ~ 55325524 (+)
G1089196 NA non-coding downstream 100723 55386158 ~ 55387520 (+)
G1089206 NA non-coding downstream 129891 55415326 ~ 55415809 (+)
G1089209 NA non-coding downstream 135436 55420871 ~ 55425203 (+)
LOC110538908 LOC106603872 other upstream 1001010 54253719 ~ 54283905 (+)
G1087914 NA other upstream 1132769 54109690 ~ 54148962 (+)
G1086237 LOC106567502 other upstream 2624236 52649604 ~ 52657495 (+)
G1082266 NA other upstream 5600927 49679023 ~ 49680804 (+)
LOC110537713 LOC106567542 other upstream 5981384 49262142 ~ 49300347 (+)
G1091217 NA other downstream 1440172 56725607 ~ 56726003 (+)
G1091235 NA other downstream 1466983 56752418 ~ 56752947 (+)
LOC110537831 dhx33 other downstream 1830390 57112902 ~ 57118165 (+)
LOC110537841 mtmr4 other downstream 2614036 57893341 ~ 58071571 (+)
LOC118937686 NA other downstream 2930720 58216142 ~ 58222215 (+)

Expression


Co-expression Network