ttc1 (LOC106567425)


Basic Information

Item Value
gene id ttc1
gene name LOC106567425
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 55625361 ~ 55643340 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021624207.2
CCCAGAGTTCCTCGGGGTCGGAACCCTTATGTGATTGGATAAGCAAGCGGAAGCATTGTTTACAGAGGGAACGTCATCGTGAGTAGAGTTTTGTACAGGGAGAAAATTGTATGGATTCCACAGCAGAAAAGGAGTCTGAGGTGCTCCTTGACAAGATGACCAACTCTCTGACCAATGCTATGAGAGTATCCAAACAACATGAATGTCCAGACAGCCAAAGCACAGCAGCCCACAGGGGTACTGAGCAGGAGGACGATGCCTTCTTTGACTGTGAGGAGTCTCTGGATGGAGCAGACGGCTCCATGGGTGACAAGGAAAGGAAGACTGACTGTTCAGAAGCCCCACCGTTATGCCagggagcagagggagacagTAAAGAGACAGTCCGATTGAACAACTCACAAAACACAGAGGAAGAACACATCAATGCAGAGTTAGGAGATGCTGAGATGTCAGGGGTGAGAACGACAATATTGGAagataaagagggggagagaggtgaaggaatggaggaggagaaagagagttggGATGAGTGCACTGAAGAAGACATGAGTTTGGCAGTTGAAGGGGGAGATTCTGATACTGAACTGAAAGGAGAAGAGAACCCAGCTCCTGAGTTTGATGAGGAGTATCTGAGAGAAGTGGAGAAAGTCCTGACAGAGGAAGAAAAGGAGAGCCGCAGAGAGGAGAGCATGACACTAAAGGACAAGGGGAACAGTCAGTTCAAGAGTGGAGAGCACACTGAGGCAGAGGAGTCTTACACGGCAGCTTTGGGAGTGTGCCCTGTGTGTTACAGCAAGGAGAGGGCTATTCTCTTCTCTAACCGTGCTGCTGCCCGCCTGCACCTGGATAAGAATGAGAAAGCCATTGCTGACTGCACAAAAGCTATAGAGTTGAACCCAAACTACATGCGGGCGATCCTGCGGAGGGCAGAGCTCTATGAGAAAACAGACAAGCTGGATGAGGCTTTGGAAGACTACAAGGCTGCTCTGGAGAAAGACCCAAACCTGCCTGCAGCCAGAGAGGCCTGCATGcGGCTTCCACAACAGATCCACGAGCGAAATGAGAAGCTGAAGGAAGAGATGATGGGCAAGCTGAAGGACTTGGGCAATATGTTCCTACGGCCTTTTGGCCTGTCCACCTCAAACTTCCAAGTGAACCAGGATACAGGCACTGGATCCTACTCCGTCAACTTTGTTCAGAGTCCAAATAACAACAACAGATAACAGCATGACAAGCCAGTCTGAGAGCTGTCACACCTGGCTGGCCTTCCATCCCCAGAGCTAAGAGACTGACACTCAGGACCCTCCACTAGTGTGTCAGAAGTCTGAGTGGGATCCGTTTGAAATCCACACGACAAATTAGTCTTTCATGGTTAAATAAGATGTTAGTGTGTGTGCGAGAGTGTACTGTCTTAACAGTCAACTGTGTTTCCTAAGGGTATAGCCATTAAATGATCAATGACTGTTACTTTG

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K24926 TTC1; tetratricopeptide repeat protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021624207.2 True 1478 mRNA 0.49 8 55625361 55643340

Neighbor

gene id symbol gene type direction distance location
adra1ba LOC106567426 coding upstream 9038 55600352 ~ 55616323 (+)
LOC110537802 LOC106603906 coding upstream 170025 55451594 ~ 55455336 (+)
LOC110537801 LOC106603903 coding upstream 212063 55398975 ~ 55413298 (+)
LOC110537800 LOC106567427 coding upstream 226849 55376021 ~ 55398512 (+)
LOC110537797 nola2 coding upstream 339926 55281731 ~ 55285435 (+)
LOC110537810 LOC106567475 coding downstream 23333 55666673 ~ 55668162 (+)
prob1 LOC106567422 coding downstream 61239 55704341 ~ 55714760 (+)
LOC110537815 NA coding downstream 148773 55792113 ~ 55846902 (+)
LOC110537817 LOC106567419 coding downstream 237731 55881071 ~ 55889473 (+)
LOC100136702 LOC100136702 coding downstream 610586 56253926 ~ 56255161 (+)
G1089281 LOC106567478 non-coding upstream 103550 55519574 ~ 55521811 (+)
G1089284 LOC106567478 non-coding upstream 110230 55513630 ~ 55515131 (+)
G1089209 NA non-coding upstream 200158 55420871 ~ 55425203 (+)
G1089206 NA non-coding upstream 209552 55415326 ~ 55415809 (+)
G1089196 NA non-coding upstream 237841 55386158 ~ 55387520 (+)
G1089812 NA non-coding downstream 26264 55669604 ~ 55670058 (+)
G1089813 NA non-coding downstream 28773 55672113 ~ 55672822 (+)
G1089814 LOC106567423 non-coding downstream 30444 55673784 ~ 55674562 (+)
G1089815 NA non-coding downstream 32049 55675389 ~ 55675627 (+)
G1089817 ccnjl non-coding downstream 33624 55676964 ~ 55677399 (+)
LOC110538908 LOC106603872 other upstream 1344640 54253719 ~ 54283905 (+)
G1087914 NA other upstream 1476399 54109690 ~ 54148962 (+)
G1086237 LOC106567502 other upstream 2967866 52649604 ~ 52657495 (+)
G1082266 NA other upstream 5944557 49679023 ~ 49680804 (+)
LOC110537713 LOC106567542 other upstream 6325014 49262142 ~ 49300347 (+)
G1091217 NA other downstream 1082267 56725607 ~ 56726003 (+)
G1091235 NA other downstream 1109078 56752418 ~ 56752947 (+)
LOC110537831 dhx33 other downstream 1472485 57112902 ~ 57118165 (+)
LOC110537841 mtmr4 other downstream 2256131 57893341 ~ 58071571 (+)
LOC118937686 NA other downstream 2572815 58216142 ~ 58222215 (+)

Expression


Co-expression Network