LOC118937819 (LOC106567418)


Basic Information

Item Value
gene id LOC118937819
gene name LOC106567418
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 56096417 ~ 56157978 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939513.1
GCCCATCATTCCACTTTTTTGATCAATTACAGTACAGCGTAGGCCTAATAGCACACTTGTTTTTACTAAtcggcttgatgattagttgactagTTGATTCAAGTGCGCTATTAGGCCTATTGGAATAGATCAAATGGCTTGGGGTAGCTGTGGAGAGGTTTGGGAAATACTGGTCTAGATTATAATGTGCTGGATAAGAAGGAAGGATATTGAAATGTTTGAGTATGCCAATAGGCAGCATGGCAGCAAAAGTCAGTTTTTCTTTTACAAAACCAATTTAAGAGATTTAAGAGATACATTCCAATTTGAGATTGATGTCAATGCATCTATGAGCTATAGAGGTTAGTTATAGATCGACCCTCCCCACTGCGGATGGTAGATTCCAAACTGCTTTAGCTCTATGCAGGCGCGCGGTGTAGAATAGGTTCAAGCTTGGCTCTCGTTCGTTTGTTCGTTAGGGAAGCCCAAATCAATATACTGTTCTCCGACCTTATCAACCCATGTCTAGAAGCCCATTTATCGGAGTCGGTCATAAATACATATTACTTTAATACTTTAAAGCGTAATATATGCTTATATTTCCTCACtcgcaaaaaaaaaacaaaaaaaaacattcaagacAGGACCGCGTGCTTCCGATGGGACTAAACTTCTTCTGAGACATAACGATGCTGTGAAACAAAGCACACCTTTCTACAAGGTGAGCGCGTCAACCTAAGCCAATCCCCTCAGAGCATCTACGCCGGTCGCCGTGAAGATGGACACAAAGGAGCGGCGGCACTGCTCCCTGACCCGGGGCCGCTGCAGGAAGGACTTCCACCATGCTATGGCGTCCCGGGAACCCGAGGAGTGCCGCGTGGCCACCCAGAAGTCCTACAGCTCCAGCGAGACGCTCAAGGCCTACGACCCCGACACGCGCATGCGCTACGGGGGCTGTGTGGCAGAGCTGGTGCATCACGAACATGAGGAGTACGTCCGTCAAGGTGAGCTCTACGTTCCTGTGTCGGTCTCTGTCTCCACTGACCAGGGATTTATTTCAGTACATTCTCTTCCGTTTTCACAAGATTTCATTTTAGTCCGGTCCGCAGCTTCTTGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939513.1 True 1096 mRNA 0.47 2 56096417 56157978
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118937818 LOC106567418 coding downstream 31193 56046013 ~ 56065224 (-)
LOC110537818 LOC106567418 coding downstream 80536 55892053 ~ 56015881 (-)
LOC110537814 LOC106567421 coding downstream 332785 55753225 ~ 55763632 (-)
pfdn1 pfd1 coding downstream 353542 55726070 ~ 55742875 (-)
slc23a1 LOC106567422 coding downstream 374713 55711778 ~ 55721704 (-)
LOC110537819 LOC106567417 coding upstream 125775 56283753 ~ 56378107 (-)
LOC118937888 NA coding upstream 355283 56513261 ~ 56523370 (-)
LOC110537820 LOC106567415 coding upstream 417570 56575548 ~ 56581114 (-)
LOC110537825 NA coding upstream 502613 56660591 ~ 56662844 (-)
LOC118937889 NA coding upstream 616599 56774577 ~ 56777945 (-)
G1090501 NA non-coding downstream 35579 56060565 ~ 56060838 (-)
G1090500 NA non-coding downstream 36020 56060171 ~ 56060397 (-)
G1090494 NA non-coding downstream 46582 56049586 ~ 56049835 (-)
G1090492 NA non-coding downstream 48497 56047562 ~ 56047920 (-)
G1090480 NA non-coding downstream 65100 56031051 ~ 56031317 (-)
G1090645 NA non-coding upstream 95964 56253942 ~ 56255161 (-)
G1090646 NA non-coding upstream 97356 56255334 ~ 56255550 (-)
G1090661 NA non-coding upstream 105953 56263931 ~ 56264164 (-)
G1090833 NA non-coding upstream 225293 56383271 ~ 56383629 (-)
G1090502 NA other downstream 33710 56062430 ~ 56062707 (-)
G1087093 NA other downstream 2963542 53131805 ~ 53132875 (-)
LOC110537745 LOC106567512 other downstream 4579338 51453362 ~ 51520396 (-)
G1084908 NA other downstream 4619646 51476417 ~ 51476771 (-)
G1084224 NA other downstream 5267302 50828404 ~ 50829115 (-)
G1092205 LOC106567410 other upstream 699360 56857338 ~ 56859147 (-)
G1092523 NA other upstream 1198186 57291444 ~ 57357274 (-)
pitpnbl LOC107739385 other upstream 3020508 59144152 ~ 59187749 (-)
G1094699 NA other upstream 3350620 59508598 ~ 59539380 (-)

Expression

LOC118937819(LOC106567418) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.8.
End of interactive chart.

LOC118937819(LOC106567418) Expression in each Bioproject

Bar chart with 6 bars.
LOC118937819(LOC106567418) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 80.
End of interactive chart.

Co-expression Network