LOC110537831 (dhx33)


Basic Information

Item Value
gene id LOC110537831
gene name dhx33
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 57112902 ~ 57118165 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110537831
ggcaagtcagttaagaacaaattcttattctcaatgacggcctaggaacagtgggttaactgcctgttcaggggcagaacgacagatttgtaccttgtcagctcagggatttgaacttgcaaatgAGACCCCTTAACGCTGCGCTACACTGTGGTGTTGCTGGATGAGGCTCACGAGCACACGGTCCACACTGACGTGCTGTTTGGAGTGGTGAAGGTAGCCCAATGCAAACGCAGAGAACAGAACAAGATTCCCTTCACCTTGGGTCACTACTAGACTCAGTAACCTGGAATCCAAACTGATATGATCTGAAACAATGGTGTAACAGAACATTTCAGTTTGAATTTCAGGCTAGGTCACTAACATTAGGCTCCATAGATAAAAATTGTCATAGGCTGGTTGTGTTTTTtaacataagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcgcacgtgCCCCCCCTGGGTCTGATGTTCCATTCTTCAAAGTACAGATGTACAATGTCAACATTACTCTGCACAGACCACCTTAAGACTGGTGGCTTGTAGTCTTGTTCTTAATGTAAAAACACTTTATGACAACTGCTGATTAAAAAAAAAGGGGTTTAAAAATAAATCTGATGTATTGTCTCTTCCAATGTACCATTCTGGGTGATCGTGATGTCAGCCACCATGGTTGTGGTCCTCTTCTCTTAGTACTTCAAGAAATCTCCTGTGCTGTACCTGGAGGAGGGCAGGCTGCACCCCATCCAAATCTACTTCACCAAGCATCCCCAGTCTGACTATTTGCAGGCTACACTGGTCTCAGTCTTCCAGATCCATcagGAAGCCCCTACATCATATGACATCCTGGTGGTCATGACGGGTCAGGAGGAGATAGAGGCGCTGGCACGTACCTGCCGTGACATCGCCAAGAACCTTCCTGACGGCTGTGGTCCCATGACAGCCATCCCCCTGTACGTCTCTCTGTCCCCTGCTCAGTAGCTCAGGCTCTTCCAGCCCGCACCTAAGGGTTGTAGGAaggtcattctctcaaccaacatCGCTGAGATGTCGATCACAATCTCAGGGATCAAATACATAATTGATACAGGCATGGTGAAAGCAAAACACTTCAACCCAGAGAGTGGTCTGGAGGTGTTAGCAGTACAGTGGGTATCTAAAGCCCAGGCGTGGTAGAGGACGGGCAGGGCTGGCAGAGAGGACACAAGGTCTGTCTACCGCCTCTACACCGAGGACGAGTTTGACAACCTCATCCCCATGACCGTGCCTGAGATAGAGAGGTGTAACCTGGCCAGTGTCATGCTGCAGCTTCTGGCTCTGGGGATTCCTGACGTGATGAACTTTGACTTCATGTCTAAGCCTTCTCCTGGTAAGCAGTCTGTCATCCAGTCCCAGGTCTGCTCTGGACTAGGGGCTGTAGAGAAGAAAGATGAGCAGGTCACCCTCACTCTTCTGGGCAAGAAGATTTGCCAGCTTCCCCCTGGAGCCACGCTATGCCAAGACCATCCTGCTGTCGCCAGACTTCCAGTGTTCTGAGGAGGTGCTGACCATCGTTTCTCTGCTGTCGGTGGACACGGGGCTCTACAACCCCCCTGTACGCCGAGAGGAGTGTCTTGCCGCACGCAAGAAGTTCACCACCAGCGAGGGAGATCACTTGACCCCACTCTACATCTACAGAACCTTCAAGAAAGTGAACGCCAACAAGGTCAGTGGATAAACTCGAGGAAGAAGAAGCCTGTGGGGGAGACTATACAAAATGCACTTCAGCTATGATCAGCTGTATACAGTACCTctggacatacagtgcattcggaaagtattcagaccccttgactttttccaaattttgttacattacagccttattctgataTTGATTAAAATAGTtgttttactcatcaatctacacac
>TU1241421
aaattgcaatgtgtcactggcctacacacaataccccataatgtcaaagtggaattatgtttttagagaatttgacaaattcattaaaaatgaaaagctgaaatgtcaataagtattcaaccgctTTGtcatggcaaacctaaataagttcaggagtaaatgttTTATTAACCATTCACATAataattgcatggactcactctatgtgcaatactagtgtttaacatgatttttttaatgactacctcgtctctgtaccccacacatacaattatctgtaaagtcactgagtcgagcagtgaatttcaaacacagattcaaccacaaatatCACAGAGGATTTTCAATGCTTCGCAAAGGGGAAAATGTTAcattgatttaatacattttgaattcaggctgtgacaaaatgtggaataagtcaaggggtatgaatactttctgaaggcactgtataatgtgaTACATGGTCTCTGCAAGCAACTATATTGTTTTGCCAGGGTTGTAGGAaggtcattctctcaaccaacatCGCTGAGATGTCGATCACAATCTCAGGGATCAAATACATAATTGATACAGGCATGGTGAAAGCAAAACACTTCAACCCAGGTGAGATTCCTCACTGACTGTACACAATGCCTTTTAAACTCTGTTTCTCTACTTGCGAGTCACTCAGGTCTGTGGCCTAGtgtgaataaataaatgaatgaacTCGAATTATGAAATGAAATTGTATATTTTCTAAATAAatatgataaaacaaaaataggcTTGAAAAATCAAAGATTAACATATATAATAAAGTCTACAGACTTATTTTCATTGTGTTCCTCATTATTTGTAATGTGTTTCTGTCTGCCCCCCAGAGAGTGGTCTGGAGGTGTTAGCAGTACAGTGGGTATCTAAAGCCCAGGCGTGGTAGAGGACGGGCAGGGCTGGCAGAGAGGACACAAGGTCTGTCTACCGCCTCTACACCGAGGACGAGTTTGACAACCTCATCCCCATGACCGTGCCTGAGATAGAGGTGTAACTGTTCCTGTCCCGTGTTCTCCCCTGTAGGTGTAACCTGGCCAGTGTCATGCTGCAGCTTCTGGCTCTGGGGATTCCTGACGTGATGAACTTTGACTTCATGTCTAAGCCTTCTCCTGAGGCGGTGGAGCAGCTGGACTAGGGGCTGTAGAGAAGAAAGATGAGCAGGTCACCCTCACTCTTCTGGGCAAGAAGATTTGCCAGCTTCCCCCTGGAGCCACGCTATGCCAAGACCATCCTGCTGTCGCCAGACTTCCAGTGTTCTGAGGAGGTGCTGACCATCGTTTCTCTGCTGTCGGTGGACACGGGGCTCTACAACCCCCCTGTACGCCGAGAGGAGTGTCTTGCCGCACGCAAGAAGTTCACCACCAGCGAGGGAGATCACTTGACCCCACTCTACATCT

Function

symbol description
dhx33 Predicted to enable RNA binding activity. Acts upstream of or within regulation of transcription by RNA polymerase I. Predicted to be active in nucleolus. Is expressed in central nervous system and digestive system. Orthologous to human DHX33 (DEAH-box helicase 33).

NR:

description
PREDICTED: putative ATP-dependent RNA helicase DHX33

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110537831 False 1918 mRNA 0.43 7 57112902 57118165
TU1241421 True 1436 TUCP 0.43 4 57115825 57117927

Neighbor

gene id symbol gene type direction distance location
camkk1a LOC106567408 coding upstream 79200 56913023 ~ 57033702 (+)
LOC110537826 LOC106567410 coding upstream 243792 56792616 ~ 56869110 (+)
zzef1 zzef1 coding upstream 398620 56663069 ~ 56719231 (+)
LOC110538909 ankfy1 coding upstream 455351 56615568 ~ 56657551 (+)
ube2g1a ube2g1 coding upstream 508526 56594310 ~ 56604376 (+)
LOC110537832 LOC106567406 coding downstream 8582 57126747 ~ 57131602 (+)
LOC110537833 LOC106567405 coding downstream 28350 57146515 ~ 57185366 (+)
LOC110537834 srrm3 coding downstream 72810 57190975 ~ 57346018 (+)
hspb1 hspb1 coding downstream 232777 57350942 ~ 57357274 (+)
LOC110537838 LOC106567401 coding downstream 318167 57436332 ~ 57618352 (+)
G1091444 NA non-coding upstream 17162 57095518 ~ 57095740 (+)
G1091443 NA non-coding upstream 18120 57094564 ~ 57094782 (+)
G1091440 NA non-coding upstream 22628 57090050 ~ 57090274 (+)
G1091330 NA non-coding upstream 73457 57035748 ~ 57039445 (+)
G1091212 NA non-coding upstream 285792 56789322 ~ 56827110 (+)
G1091459 NA non-coding downstream 19502 57137667 ~ 57138199 (+)
G1091469 NA non-coding downstream 22654 57140819 ~ 57141053 (+)
G1091470 NA non-coding downstream 23344 57141509 ~ 57141711 (+)
G1091472 NA non-coding downstream 24219 57142384 ~ 57142635 (+)
G1091473 NA non-coding downstream 24619 57142784 ~ 57143067 (+)
G1091235 NA other upstream 359955 56752418 ~ 56752947 (+)
G1091217 NA other upstream 386899 56725607 ~ 56726003 (+)
LOC110538908 LOC106603872 other upstream 2832181 54253719 ~ 54283905 (+)
G1087914 NA other upstream 2963940 54109690 ~ 54148962 (+)
G1086237 LOC106567502 other upstream 4455407 52649604 ~ 52657495 (+)
LOC110537841 mtmr4 other downstream 781306 57893341 ~ 58071571 (+)
LOC118937686 NA other downstream 1097990 58216142 ~ 58222215 (+)
G1093909 NA other downstream 2423393 59541558 ~ 59542603 (+)
G1094218 LOC100380853 other downstream 2912838 60031003 ~ 60034020 (+)
G1095244 LOC108238713 other downstream 3267499 60385664 ~ 60385973 (+)

Expression


Co-expression Network