LOC110537836 (LOC106567402)


Basic Information

Item Value
gene id LOC110537836
gene name LOC106567402
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 57389613 ~ 57404991 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036937862.1
CTTCTGCTTCTTCTAACCATAGGCAGTCGCGGGGCATTAGGATATTAACATAcaatgctgttgtctttattgtTTTAAGTAAAACTTGTCACTGAAGCCAGGTACTTATAATCACGGAAAGGTGAAGGAGATGAAAGACAGCTTGGTACATGTAGAGCCGGACGACAGTTTTTTTCTCCCTCTATTTCCACACAAAGTTCCTATGTTTTTCTGCTGCGAGAGTTGGGGAACTGTTCTGTGAGCTACCTGCCATCAGAAAATCGAAGGACAATTTGTTTGTAGATATTTTTggaaatttattttattttatttatcctgtGGGAAAAGAGAGCAACTTTTATTCCAGGTATCTTTGAAAATTCTTATAATTTCTTTATGTTTGGTACAATTTTCAAATTGCACATTATCCTAACTCTTAGTTTAAATATATAGTATATTTCAAGCCAGTGATTGGAAAGTAGCATGAAATGTGCCTTTTGAATGTCTCACCACAGTGATTTTGTATAACTATATTCAATCTGTAGTTAATCAAATAATATTTCAGTGGATGAAACAAGAACATAAATAATTGAGGAATTTCTAAAGGGCATTGTAATTGGAAAATTACTAAATAATACCACAATTATAGCCAATTATAACTCTACAACATTATGTTAGCATGAAAATGATTTTATTTTTGTCAATAACTGATTGAAGATATGACTCTTCTGTCTTATTTGTCACGTCTTAATGGGCAAAGAACAAGAAATATGCCATGCGGGGATGATGTTACCCATGGAAATGGACAAGGGGCAGATAGACCTGTCGACCGATGCAAAGAATCTGAATTTAAAGCGTTCAAAATTCCTCCCTTTTAGTGTGAGTGACcgtgagagagagtcagagtgtTATATTCCTGGTTATCTCGGACGTTCAGGGGTATTTTCATGGGGCAGAGGATCTTTCAGCTATTTCTCAGGGGCGCAGGgcaaagaggagggaggggaagcaCAGCCGACACAAAAGGCAACATTATTCCCCGGCGGATCTGCGCTACATCCCGTTATGAATGGAGTATTGAAAAATACAACATTGGGGACTAGATTATTTTTCATCCCTCATAACTGAACCATTTGTCCCAGGGTTTTGAGCGGTTTGTTAGCACGCTGTGCCCAATGGAACAGCCATGGTGCTGGGCTGCTCCGCATTAAAATCCCTGCTTCCTAATTGGACAGCACAATGACCTCTGGTTGCCTCTGCTCTCCACAACCTCCTCCCTCCTGCCTTTCACCTTTCAACTTAATGTCATGGCCTTCCATACATGCAATATGGCCGTCAATACAATTAAATTAAATAACACAGGGCCAGGGTTGGTGTAGTTGAACAGGGTCAAGGTTAGCGGATTTGTTAAGCTGTTGATTGGTGCTGAAGGGTGTTAGAGGAGGATACTTGGCCTCGCTGACCTGTCAGtgtatttacagtgcattacAGTATCTGctatggtaatatacagtgtagctacactatactacaacatatggGCAGAATCCAACTGAACTGGACACATATCTACAGGTAGATGAGCAGGTGAATTTGGTCTTGCCACCCTCCCCTTCTCGCTGCTGCttacccccctctcctcctattCTCCCAGGAGCCGAGAGGCGCCCCTGTGGTGTCATCGGCTGCCTAAGCGTTTCGGAGAGTTCCAGTGACAGATTGCAGGAAGCAGCGTTTAGGCCTGACGATCGGGACCACAGACAGCAGAAATGTCTTTTTGTTGGCCCCTGGGCTCGGAATGTCCACTATCTCCAGGGGCCAATATCAtattctccttctcccctcatcaTCCGTCCCCAGTCCCCAAACTAACTAGTACACATTCCTTTGTAAGGTTTTGGTACAATACAAAGACACACAACCAACCCAAAAGTCTGATCAGACATAGGCAAAACAAACATTTTCCTCAAAAAAAGACGTTTGAAAATATTTCACATTTAGATTGCTTACCGCTTTTTCAAACAATTATACAAACCAAACATTTCTTCAGAATTCAGTGGATAAATATGAGCATGAGGATGTGATGTCAGGACAATAGTTCTATGCAATTAAAGAGTTTATTACTGGAGTCAGACCTATTTTGAAAAACAAACATCCCTCCAGGCAAGAGCTTTGTTTCAAGAGAAatcaagcagcagcagcagtttgCAATGTTTCTTGCTGCTCCCTATGAAACCAGATTCTTTGGTCACGTTTTTTTGTGCTTCCTAGTATAACAGgtggttcagggcagggtaccggaGAAAGAAACTGTTTATCAGTCTCttagtcccagctttgatgcacccgtACTGTCTACGCCTTCTAGACATACTGTATAACTACTGGCATCCCTTACTTACTGCCCTCCGTAGTACAGAATAGACAaatttgaaaataaaatataatgTTTGCCACTCTGTTGGGGTAGCGGTGGCACATGTCCACTCACTGCCACCTGGGTGATGCATGGCACTGGTATCCATTTTGTGCCATTTTGTGCATTGCATGCTCACCACAGGTCACAACAGTTTCTCGGTGCCCAGTGTTTTAGCAGCCAGCCAGTGTGCAGTGGGGTGGGGTTGGGTGGCAGTGTAGTAGGCAGCTAGGCAGCCATTTTGGCCTGGGGAAATGGGCCAGTCGGCTTCATGCTCCAGCAGGTCCTGGGGCACACTGGGAGTTGTTTTAGTGCCAATCAATCTGGagtggacacagagacacagcatgGCGTGCCCactcacacctctcctctccatcactggaacacacacacacacacacacacacacacacacacaccggtttCAGTTCAGTGCATGGTTTTTGGAAACTATTTATGTTCCAACTTCCAACCAATAAGCTTCACTTGCCTGATACTATCACCGATACTAACTCCCCACTACTGTATAGTCATTTGGCTGCAGGGGGTTGCACTAGAAACAGCTATCCAATACTATGTTGGGAATACAATGGTTATTGATTATGATTAGTAGCAGTAGACTAGTGGTGGGCAGTGAGTACCAGTATTAGGGGTCCAGACTGTTTCAGCAGTGAAGAGAAACAGAAAAAGGCAGGAAGGTAGGTAATGTGtgtgagagcgatagagagacagagacagagacatagacagagacagagacggagatagAGAGTCCAGTGCACTGATGggttgtgtgtgtaagtgtgtgttccACCAGGCACCCAGACTGATTGGAGTGTCAGTCAGACAGCGAGCCATGCGAGGGCAGCGCGTAGCAGATTGTGTGCGTAGACCATGTGGAGAATGGACAGTGGTTGTCTGGCTGCTGTTGTCCCTGCTAGGTTCCCTGCTACTGGTGGGCATCAGTGGGATTCTGCAGATTGATATGACCAAAATCAGCAGACGAGCCATATCCACCAATAGCACGACAACGATGACTGCCATGAAGACAACGCATTCTCAAGtgcgTCTGGTGAACGGGCGTAACAGGTGTGAGGGGCGTGTGGAGGTTTGGCACAACGGGACATGGGGTACAGTGTGTGATGACGACTGGGACATGGTAGATGCCAACGTGGTGTGTCGGCAGTTGGACTGTGGTCTGGCCATGGCGGTGGGCAGCATCTCAGAGTATGGCCAGGGCTCAGGGCCCGTCCTGCTGGACAATGTAGACTGCAAAGGAGGGGAGACAGACCTGGGACAGTGTGGAAGTCTGGGCTGGGGCATCCACAACTGTTACCACTATGAGGACGTGTCTGTCACATGCAAAGATACATCAGTGCTGGAGTCACGGGGCATGGGCGAGCCCACCACTCCGTCTAGGAGAAACTCAGGGTTAAGAGATGGTACAATCCGGTTAGTTGGTGGACTGGACTACTGCCAGGGACGGGTGGAGGTCTACTACCGTGGCAGCTGGGGGACGGTGTGTGATGACGACTGGGGTATGAGAGACGCAGGGGTGGTGTGCCAGCAGATATACTGTGGCCATGCTGTTTCCTCCACCACCAACGCCTATTTTGGCTACGGGACAGGCCTGATTCTACTGGACAACGTCAACTGTAATGGCTACGAGAACCAGCTGAGTAAGTGCTACAGCCTGGGCTGGGGGATACACAACTGTGGACATCATGAGGACGCTGGGGTTATCTGTTCAGGCTCAGGATCCACTACCGTTCCTCCTATGAACACTGAAACCATGGGCATCGGAAGGGGATTCTTTCAGACTGCCAGCACTGCAGTAACCGACCAAACAGAATTAGTCACCGAAGCAACTACGGCTGTGACAACGGTTGCTATGACAACAAGAGaGCGGCCCACCATCCGCGTGGTGAATGGTAACAGCAGCTGCCAGGGCCGTGTGGAGGTGTTCCACAACAACCAGTGGGGCACGGTGTGTGACGATGACTGGGATCTGCCCAATGCCCAGGTGGTGTGTAGGCATCTGGGCTGTGGCCCTGCCATCTCTGCCAAGGTCCTGGCCTACTTCGGCTACGGCTCGGGCCCCATCCTGCTGGACAATGTGGACTGTAGGGGCAGTGAAGGGGAGCTGTCGGCTTGTTTCCACCTGGGCTGGGGACAGCACAACTGTGGACATCATGAAGACGCTGGAGTCATCTGTACACccTTTCAGCTTGTGGGACCTGGAAATGACTTCGGGATGACAGAGAGAACGCCCACCACTAGACCACCAAGTGAAGgCCTGGCGAGGTTGGTGGGCGGGCAGCACCGCTGCGAGGGCCGGGTGGAGATGTTCTCAGGGGCGGAATGGGGTACGGTGTGCGACGATGCCTGGGACATGCCTGATGCCCAGGTGGTGTGTCGCCAGCTTGGCTGTGGGGAGGCTGCTACGGCCCGTGTGGAGGCCTTCTTTGGGCCCGGCAGCGGCACCATCCTCCTGGACAATCTGAAGTGCAGCGGCTCTGAGGCCTCGCTCCAGCAGTGCTCCCACATATCCTGGGAAGTGCACAACTGTGACCACTCTGAAGACGCCGGCGTCACCTGCTCACTGTCGTGATTCCAGCAGTGATTCGCCGCCATGGAGCCGCCAAACTCCTCCCAACTCCACTGCCAACTAATAGGACGGGCGCCATGGGTAGCACAACCCGGGACTTGTAAACATTATGTAAATAACAGCTCATCCCAATGCCAAACATAAGGaagactacaacaacaacaaacaaacaagcaaagAAACTAACATATGATgatatatgattaaatattataATAATCTATTCCTATTAAGcactttataaatatatataaatatatatgataTAAAATACGCtgtacacattttttttatatttgataAACAGTGGAAACCAACGTTTTAAAccgactctctgtctctctggctcttttctttttttgttgtcaagATGCTAAAATAGAGGTCCTCTCACTAACCCTCTTCTCACTAGCCGCACACACAGCCATAGTGTACTGTACCAGGGCATGgtgctcaacaacaacaacaacaacagcagcaatcCAGGCCCACAATACCAAAGCCAAACTTATAGACtctatagagactatagactATCTATAGAAAGGGCTATGTATTTCTATGGCCAAATATATTTGTTTGAACATAGGCAGAAAGATGGACAGTACATGTACATGACACTGTAGTGCTCTTGGCACATGCTTCCTAATTTGATAaactttttaatgtattattcctGAGCAGAGGTGGATGTATATCTGAAATCTGATCATGATGACTTCCAAAGCCCCAGTATTTTGGTTATTTTGCTGAAATATCTGTTATATTTGACACCTTTATTGTGTAAATAATCACCCTAGCTAGTTTGTGTTCTATTTTTTCCTCTCTTATGAAACTCTCTTATGACCCATTGTCTGACTTGTGTATTTTAATGTCTGGTTTTGGAAAAGGCTAGCTTgtcttcactgtctctctctctgtctctctctctgtctctctctctctctgtctctctctctctctctctctctctctctctctgtcagacagtGCTATTTCAGGTGGAGTATGGCATATGATCTAAGCCTTAGCTACATCCTTAATTATCTGCTCGTGCCTTTTCATTCGTATTTTGTATCAGACATTTCGCACTACAAGGTGTACATTTCATTTCAGTGTGTAAGGATGTGCATCTGTGTCTGTGAGTTAATATTTGCGTGTCTGGCAGGTGAGTCAGATCTACTGTACTGTTTGTGAATGTGtgcgtacagtatatacagtcagTGACATGTACACTGATTGTGGAATTATTACAATATGGTAGTAGTCAGATTGCTCAAATCTGTCACTGCAATGATTAAATCTGAATCTGAAAAAGTCAAAA

Function

NR:

description
scavenger receptor cysteine-rich domain-containing group B protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036937862.1 True 6330 mRNA 0.46 11 57389613 57404991
Loading

Neighbor

gene id symbol gene type direction distance location
LOC100136198 LOC100136198 coding downstream 10501 57366383 ~ 57379112 (-)
LOC118937684 NA coding downstream 114623 57258779 ~ 57274990 (-)
LOC110537827 p2rx1 coding downstream 300097 57036871 ~ 57089516 (-)
LOC118937889 NA coding downstream 611668 56774577 ~ 56777945 (-)
LOC110537825 NA coding downstream 726769 56660591 ~ 56662844 (-)
LOC110538911 NA coding upstream 235138 57640129 ~ 57645946 (-)
LOC110537845 vkorc1l1 coding upstream 794397 58199388 ~ 58217969 (-)
LOC110537849 hand1 coding upstream 883972 58288963 ~ 58290670 (-)
LOC110539152 csn6 coding upstream 1108234 58513225 ~ 58526183 (-)
LOC118937820 LOC106600617 coding upstream 1236590 58641581 ~ 58658331 (-)
G1092572 NA non-coding downstream 1313 57388034 ~ 57388300 (-)
G1092523 NA non-coding downstream 32339 57291444 ~ 57357274 (-)
G1092425 NA non-coding downstream 244630 57144750 ~ 57144983 (-)
G1092421 NA non-coding downstream 248342 57140972 ~ 57141271 (-)
G1092420 NA non-coding downstream 248833 57140558 ~ 57140780 (-)
G1092631 NA non-coding upstream 69564 57474555 ~ 57493672 (-)
G1092743 NA non-coding upstream 216045 57621036 ~ 57622626 (-)
G1092757 NA non-coding upstream 235383 57640374 ~ 57640637 (-)
G1092759 NA non-coding upstream 236579 57641570 ~ 57641838 (-)
G1092760 NA non-coding upstream 239183 57644174 ~ 57644457 (-)
G1092205 LOC106567410 other downstream 530466 56857338 ~ 56859147 (-)
LOC110537819 LOC106567417 other downstream 1096996 56283753 ~ 56378107 (-)
G1090502 NA other downstream 1326906 56062430 ~ 56062707 (-)
G1087093 NA other downstream 4256738 53131805 ~ 53132875 (-)
pitpnbl LOC107739385 other upstream 1773495 59144152 ~ 59187749 (-)
G1094699 NA other upstream 2103607 59508598 ~ 59539380 (-)
G1094783 NA other upstream 2295477 59700468 ~ 59702147 (-)
natd1 natd1 other upstream 2563277 59968254 ~ 59971543 (-)
snrnp70 LOC106583923 other upstream 2933883 60336697 ~ 60349405 (-)

Expression

LOC110537836(LOC106567402) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.15.
End of interactive chart.

LOC110537836(LOC106567402) Expression in each Bioproject

Bar chart with 19 bars.
LOC110537836(LOC106567402) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 10.
End of interactive chart.

Co-expression Network