LOC110538918 (nkx3-2)


Basic Information

Item Value
gene id LOC110538918
gene name nkx3-2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 58545146 ~ 58546597 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110538918
GGGGATACGATGCCGAAGAATTGCCATTGGTTAATTTCTACACTTTTTACAAGAAATAAACTTTGCTTTTGAAAATGCCATTTCACAGCAACTCCTTAATGCCTTTCTCTATCCAAGCCAttttgaacaaaaaaaaaaaaaaaaagagtacaGTGGACACTTGGCAGATTTCGACGACTGCTTCTCGAAGAATGCGTGTTGGAAAATATTTGGGGAAATGGATACTGGTTCGGAGGACTTTCCCGCATCGTGTAGAAGTGACGAGGGGCTTGCATGGTCAGCGATCAGAAAAGTTACGACTCCGATTCAGGTCTCAGTGATGACAATGCCAGCAAGGCCCTGGCCGTTTGTAAGTCAGAGAAAAACAGGGATCCTGTTTCAGACGTTCTGGAAGAAAGTTTGCAGGACGAAACGGCCCATGAATGCACTTCTGTCGATAACGCACAAGGTCTTAGAGACTGTGAACCTAGTGTTTCAGGTGAGAGATTCCAACAACGTAGACGATGCCAGTCGTGATAAAAGTTCGGATCAGCCCAAACAGAGGAAAAAACGCTCAGGGGCTGCGTTCTCCCACGGGCAAGTGTTCGAACTCGAGCGGAGGTTCAATCGCCAAAGATACCTATCCGGACCGGAGAGAGCAGACCTGGCGGCTTCCCTGAAGCTGACAGACGCAGGTCAAAATATGGTTCCAGAATCGTAGATATAAAACAAAACGTCGTCAAATGGCTGCCGACTTGATTGCCCCGGTCCCTGCAGCAAAGAAAGTGGCGGTGAAAGTGTTAGTTCGAGACGACCAGAGACAGTACAACCCCGGAGAACTACTGcggactcctctcctctctctccaaccgTCTTATTACTACCCCTATGCCTATTGCCCTGCATGGACGCTCTCTACTTGTGCTGGGAATCAATGA

Function

symbol description
nkx3-2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within embryonic viscerocranium morphogenesis. Predicted to be active in nucleus. Is expressed in several structures, including neuromast; notochord; pharyngeal arch; pharyngeal endoderm; and skeletal system. Orthologous to human NKX3-2 (NK3 homeobox 2).

NR:

description
LOW QUALITY PROTEIN: homeobox protein Nkx-3.2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110538918 True 917 mRNA 0.48 3 58545146 58546597

Neighbor

gene id symbol gene type direction distance location
LOC110539153 LOC106604490 coding upstream 14927 58528290 ~ 58530219 (+)
LOC110537848 sp30l coding upstream 258518 58274018 ~ 58286628 (+)
LOC110537846 ggnbp2 coding upstream 272360 58225787 ~ 58272786 (+)
LOC118937686 NA coding upstream 322931 58216142 ~ 58222215 (+)
LOC110537844 LOC106567395 coding upstream 360697 58159958 ~ 58184449 (+)
rab28 LOC106600633 coding downstream 29004 58575601 ~ 58625910 (+)
LOC110538919 atp8a1 coding downstream 144520 58691117 ~ 58827450 (+)
LOC110538920 NA coding downstream 304139 58850736 ~ 58873451 (+)
LOC110537867 LOC106600640 coding downstream 328804 58875401 ~ 58917409 (+)
LOC110537868 LOC106600641 coding downstream 388933 58935530 ~ 58959234 (+)
G1093326 NA non-coding upstream 40078 58504796 ~ 58505068 (+)
G1093252 NA non-coding upstream 85465 58425346 ~ 58459681 (+)
G1093248 NA non-coding upstream 123915 58415787 ~ 58421231 (+)
G1093243 NA non-coding upstream 129962 58402466 ~ 58415184 (+)
G1093397 NA non-coding downstream 60221 58606818 ~ 58607396 (+)
G1093401 NA non-coding downstream 68738 58615335 ~ 58615695 (+)
G1093404 NA non-coding downstream 76065 58622662 ~ 58622907 (+)
G1093349 NA non-coding downstream 80228 58626825 ~ 58627165 (+)
LOC110537841 mtmr4 other upstream 630314 57893341 ~ 58071571 (+)
LOC110537831 dhx33 other upstream 1427219 57112902 ~ 57118165 (+)
G1091235 NA other upstream 1792199 56752418 ~ 56752947 (+)
G1091217 NA other upstream 1819143 56725607 ~ 56726003 (+)
G1093909 NA other downstream 994961 59541558 ~ 59542603 (+)
G1094218 LOC100380853 other downstream 1484406 60031003 ~ 60034020 (+)
G1095244 LOC108238713 other downstream 1839067 60385664 ~ 60385973 (+)
LOC110539079 LOC106600700 other downstream 2150090 60696612 ~ 60777061 (+)
G1095209 NA other downstream 2269894 60816491 ~ 60818897 (+)

Expression


Co-expression Network