Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110538920 |
| gene name | NA |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048576.1 |
| NCBI id | CM023230.2 |
| chromosome length | 102853256 |
| location | 58850736 ~ 58873451 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| LOW QUALITY PROTEIN: BEN domain-containing protein 4-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| LOC110538920 | True | 1478 | mRNA | 0.57 | 11 | 58850736 | 58873451 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110538919 | atp8a1 | coding | upstream | 26165 | 58691117 ~ 58827450 (+) |
| rab28 | LOC106600633 | coding | upstream | 226279 | 58575601 ~ 58625910 (+) |
| LOC110538918 | nkx3-2 | coding | upstream | 304139 | 58545146 ~ 58546597 (+) |
| LOC110539153 | LOC106604490 | coding | upstream | 320517 | 58528290 ~ 58530219 (+) |
| LOC110537848 | sp30l | coding | upstream | 564108 | 58274018 ~ 58286628 (+) |
| LOC110537867 | LOC106600640 | coding | downstream | 1950 | 58875401 ~ 58917409 (+) |
| LOC110537868 | LOC106600641 | coding | downstream | 62079 | 58935530 ~ 58959234 (+) |
| LOC110537870 | LOC100380866 | coding | downstream | 88316 | 58961767 ~ 58975136 (+) |
| LOC110537871 | LOC106604470 | coding | downstream | 178878 | 59052329 ~ 59106006 (+) |
| sez6l2 | sez6l2 | coding | downstream | 359903 | 59233354 ~ 59343106 (+) |
| G1093544 | NA | non-coding | upstream | 175929 | 58674579 ~ 58674807 (+) |
| G1093541 | NA | non-coding | upstream | 178184 | 58672342 ~ 58672552 (+) |
| G1093537 | NA | non-coding | upstream | 180021 | 58670410 ~ 58670715 (+) |
| G1093520 | NA | non-coding | upstream | 188884 | 58661585 ~ 58661852 (+) |
| G1093678 | NA | non-coding | downstream | 17171 | 58890622 ~ 58890896 (+) |
| G1093680 | NA | non-coding | downstream | 19501 | 58892952 ~ 58893163 (+) |
| G1093713 | NA | non-coding | downstream | 107805 | 58981256 ~ 58981520 (+) |
| G1093714 | NA | non-coding | downstream | 108822 | 58982273 ~ 58982472 (+) |
| G1093715 | NA | non-coding | downstream | 109184 | 58982635 ~ 58982914 (+) |
| LOC118937686 | NA | other | upstream | 628546 | 58216142 ~ 58222215 (+) |
| LOC110537841 | mtmr4 | other | upstream | 935904 | 57893341 ~ 58071571 (+) |
| LOC110537831 | dhx33 | other | upstream | 1732809 | 57112902 ~ 57118165 (+) |
| G1091235 | NA | other | upstream | 2097789 | 56752418 ~ 56752947 (+) |
| G1091217 | NA | other | upstream | 2124733 | 56725607 ~ 56726003 (+) |
| G1093909 | NA | other | downstream | 668107 | 59541558 ~ 59542603 (+) |
| G1094218 | LOC100380853 | other | downstream | 1157552 | 60031003 ~ 60034020 (+) |
| G1095244 | LOC108238713 | other | downstream | 1512213 | 60385664 ~ 60385973 (+) |
| LOC110539079 | LOC106600700 | other | downstream | 1823236 | 60696612 ~ 60777061 (+) |
| G1095209 | NA | other | downstream | 1943040 | 60816491 ~ 60818897 (+) |
