LOC110538920


Basic Information

Item Value
gene id LOC110538920
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 58850736 ~ 58873451 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110538920
ATGGTAGAACATTTGAAAGAGGAAAAGCCAGATAGAGAGTGGGAGAACGTGGAAAACCGTCTCATCTTGGATGCTTTCGCACAGGAGTGTAGCCGTGTACTCACTCTCCTCAACGATGGCCGGTTCGTGGAGCCCCAAGATCCTCTGCCCTCCTCCGTTACCACCCACATCAAGCAGGAGGAAAGCTGCCTCTCTAGGCCTGGGGGGGAGTCAAAGCCAGACGCGGGTCAAGTGGGTCACTGCCCCAACCTGGGCAAGCCACAGCCCAGGGAGAGCTCCACCGTTGATCCTGATGATGAAGCACAGCACAGTCACTGGAGCCAAAAACAAACATACGCATTCCTGCACATCTTCACAAAGTCCCTCCAGAGCTACCTGTTCACCGGGCCCCAGCAGCCCCACCCGGACCTGGGCCTCGAGGGAGAGCGAGTCCCATCGGCCGAGTTTAGGGTGTCACCCAGCAATAACCTTGGGGGCTGGAGCTCCCCAGCCCCTTCGGAGTCCTATGGCCACCCCTCGTCCACCCTgccggaggaggaagaggagagctgCTGCCCTCGCTGTGTGGAGCTGGAGCAGGAGATGCTGTGTCTGCAGAAGGAGAATGAAGAGCTGCGCAACAAGCTGGACAACATACCAGtgccttgcgaaactgtacttgattacacacaggtggattgtatttatcatcattaCCTCTTGTCATCCTCTTCCGTTCTCCGTACCCCTCCTCAGGGCAGTAAACAGCTCCTGGGGAACTACCCCCTCTTCTTCACCAACAAGCAGTGGGACGAGGCTGTGAACTCGTCCAAGAAGGACTGCCTGTCTTCACCACGGATGAGCTCAAGTACTCGTGCGGCTTGGGCAAAAGGAAGCGCTCGGTTCACTCAGGAGAGCCTGGACCGGAGAGACAGCCCCTCAAAACCCTGTCAAAGTTACCTGCCTCAGAGAGTttatccgaatgcactgtgcctCCTGACTGGTGGTCGCCTTCCGAGGAACAGATCAGCAAACTATTCAGTGATGTGATGGGTCATGCGCGCCAGGGTCGGTCCGTGGGGGAATGGGGACAGGATCGCCCTTCAGAACAGGCCCTGGTGAAGTGTATCACGCTGCGTTGTACGAAGAACAGTCGTGTGTGTGGGCGGCCTCTGGTCTCTGCCGGAGAGGAGCGTCAGTATTTAAGAGGTGGAGCTGACACAGAAAGGGAGGAATATGAGCTGGCACGCACAGAGGGACACACCACAATCAGAAGGATTAATGTGCTGGCCCCTCACTTCTCCTCCTGCACGCACTCAGACATGGTGTGGCAGAGGAGGTCCAGGGTGATGGGGAACCTGGTGTTGAAGAACAAAAAGGCCCGGTTTGTCGTTGCCCATAaactgctgctgctccaatacaaGAATGAGgtgctGCGAGCGATGTGCCACGCTTGGGCCGACCCCCTCTGCAGCAGCAGCATAGTGTGGGACTACTGA

Function

NR:

description
LOW QUALITY PROTEIN: BEN domain-containing protein 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110538920 True 1478 mRNA 0.57 11 58850736 58873451

Neighbor

gene id symbol gene type direction distance location
LOC110538919 atp8a1 coding upstream 26165 58691117 ~ 58827450 (+)
rab28 LOC106600633 coding upstream 226279 58575601 ~ 58625910 (+)
LOC110538918 nkx3-2 coding upstream 304139 58545146 ~ 58546597 (+)
LOC110539153 LOC106604490 coding upstream 320517 58528290 ~ 58530219 (+)
LOC110537848 sp30l coding upstream 564108 58274018 ~ 58286628 (+)
LOC110537867 LOC106600640 coding downstream 1950 58875401 ~ 58917409 (+)
LOC110537868 LOC106600641 coding downstream 62079 58935530 ~ 58959234 (+)
LOC110537870 LOC100380866 coding downstream 88316 58961767 ~ 58975136 (+)
LOC110537871 LOC106604470 coding downstream 178878 59052329 ~ 59106006 (+)
sez6l2 sez6l2 coding downstream 359903 59233354 ~ 59343106 (+)
G1093544 NA non-coding upstream 175929 58674579 ~ 58674807 (+)
G1093541 NA non-coding upstream 178184 58672342 ~ 58672552 (+)
G1093537 NA non-coding upstream 180021 58670410 ~ 58670715 (+)
G1093520 NA non-coding upstream 188884 58661585 ~ 58661852 (+)
G1093678 NA non-coding downstream 17171 58890622 ~ 58890896 (+)
G1093680 NA non-coding downstream 19501 58892952 ~ 58893163 (+)
G1093713 NA non-coding downstream 107805 58981256 ~ 58981520 (+)
G1093714 NA non-coding downstream 108822 58982273 ~ 58982472 (+)
G1093715 NA non-coding downstream 109184 58982635 ~ 58982914 (+)
LOC118937686 NA other upstream 628546 58216142 ~ 58222215 (+)
LOC110537841 mtmr4 other upstream 935904 57893341 ~ 58071571 (+)
LOC110537831 dhx33 other upstream 1732809 57112902 ~ 57118165 (+)
G1091235 NA other upstream 2097789 56752418 ~ 56752947 (+)
G1091217 NA other upstream 2124733 56725607 ~ 56726003 (+)
G1093909 NA other downstream 668107 59541558 ~ 59542603 (+)
G1094218 LOC100380853 other downstream 1157552 60031003 ~ 60034020 (+)
G1095244 LOC108238713 other downstream 1512213 60385664 ~ 60385973 (+)
LOC110539079 LOC106600700 other downstream 1823236 60696612 ~ 60777061 (+)
G1095209 NA other downstream 1943040 60816491 ~ 60818897 (+)

Expression


Co-expression Network