LOC110537868 (LOC106600641)


Basic Information

Item Value
gene id LOC110537868
gene name LOC106600641
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 58935530 ~ 58959234 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021624301.2
ATCGAGGGTTCTTGGTTGAACGTGGACGCAACGTGGACGCACGCCGTGCAGTCCTTGCACACCAGGCGAAATGCAGTGGAAAGAGTGTGTCCCTTATTTTCATGGACAGATTTTGGGTGAAGTaaaacctctcgcttcgcctcttcctctctgccataACACAAAAACAGTTATGCAACCTATTTTCAACTGATCAATTATTTGGTATGTGTAGTCATCTTGTATAACTTTCGCTGTGTAACTGGAGATGACAGAAACTACACCTCCCAAATAACATTGCGATTAATTGCTTCTCTAGTTTCACGGAGTATAGCCAGTTCACTACTTAAAAATCCCGTTTCATGACTGACTTTATTTATAAACAAATACTTATCCGTTCTCATGGCGGAATCTGCAGCCTGTCCTGCATTCCAGCTTGGAAAACCTCGATATGATCAGAGTTCATTTCTTGGCCGGCTGAAACACTTTGTAGAGATCATTGACCCCAGCACACTCTTTGTGTCTGAGAGACGATTGACAGAATGCATTAAGCTCCTGGATGAATTTAAACACGGAAAACTACCACCTGGAGTTTCTGATCTACAGCTATGGGAAGCCCAAAAGGTCACGCAGGCCATCATTCATCCTGACACAGGAGAGAAGATTTTCATGCCTTTTCGAATGTCAGGTTATGTCCCATTTGGAACACCAATTGTTGTGGGCCTTCTTCTTCCAAATCAGACTGTGGTATCCACCATTTTCTGGCAGTGGCTTAACCAGAGTCACAATGCCTGTGTCAACTACTCAAACCGCAATGCTACTAAGGTAGTGTATGATGCTACCAAGCCTACACCGACATCCACGTTTCTTCAAGGTTACTTCGGAGCTGTGACCAGTGCTGTCTCTCTTGCGGTAGGACTGAATGTACTGATTCAGAAAGCCAACAGGTTGAGTCCAGCGACCCGAATGATAATACAGAGACTCATCCCTTTCCCAGCTGTGGCCAGTGCCAACATTTGCAACGTGGGCCTCATGAGGCACAATGAGTTGTCGGAGGGCGTCAACGTGCTGGACGAAAATGGGAACATATTGGGCTCCTCAAAGATTGCTGCCAAACATGCAATTATGGAGACAGCCTTTACCAGAGTGGTCCTCCCGATGCCAATATTTGTCCTTCCTCCCATCATTATGTCCTACCTAGAAAAACTTCCATTGCTGCAGATGAATCGGAGGCTGTTGCTGCCCATCCACAGCCTGGTGTGTCTGGCTACCTTCAGCCTCTCCCTGCCCCTGGCCATCAGCCTATtcccacagatgtctcagATAGAGGTGTCTCAGCTTGAGCCGGAGATCGCAATGGCAACCGATTGCAAGGTGGTGACCTACAACAAGGGACTGTGATGACTGGCCCccgaggagagagtagaggacagggcACTGAACAGAGGTGCAAATTAGCCTCCTTTTTGACTGGCTGTAACGGACACTCCAGGTCTCTCTctggtgtagggtgaagttgcccctagacgctgatcttggcTCAGTTTTGTATTTTCCCACTAATGGATTGGGGAGGAGAAGCTTATCCCAGATCTGAACCTgggggaaacttcaccctggaTCTCTGTCTCCCATAGCATGGTAACAGCTCCAGGCACTTTTTGCTGCATTAAAATAGTGTTGCATAGATAATGTACTGTCTTAATCAATGGTTTTAATACAACACATTCCATGGAATGTGAAAATTATGCAAATCAGTAAGGATTGAGGGAGGTTAACAGAACAATATTGTTGTCATATGTAATATGTTGTAATATGTTATGATGGAACTTTATAATGTAATGCCCATACCATACCAGCTATTTCGCAATTGGTCATGCTGATCAACCCAATTGTTTAAATTTTTATGAGATGTTTTTATTGTTGAcctgaagtttaaaaaaaaatatgtttaagtAAAAGATACAATCTAAAATAGTTTTACAATCCCATGAATCAGTGTTGAGTGATAGATCCTGACAGAGTGTTACAtaccccttgacctattccacattgttttgttacagcctgaattcaaaatggattagatagatttgttttctctctcacccatctacacacaatacagaaatatctaatttacataagtattcacacccctgagtcaatcacatgttagaatcacctatgggagtgattacagctgtaagtctctacgagctttgcacacctggattgtacaatatttatacattatttttaaaattcttcaagctctgtcaagttggttgttgatcattgctaaacatcCATTTAAGTctagccatagattttcaagcgtAATTAAGTAAAAACTGGaagtaggccactcaggaacattcaatgctttcttggtaagcaactccagtgtatatttggccttgtgttttaggttattgtcctgctaaaaggttgttgatccatcctccatttctcctatcacagccattaaactctgtaactgttttcaaGTCACCATTGGCTGGCCTCATGGTGTAATACCTgagcgatttccttcctctccggcaacttagttaggaaggatgcctgtatctttgtagtaactgggtgtattgatacaccatccaaagtgtaattattaagttcaccatgctcaaagggatattcaatgttagctttttgttgttgtacccatctaccaataggtacccttattttgaggcattggaaaacctccctggtgtttgaatctgtatttgaaattcactgctcggctgagggaccttacaattatctgtatgtgtggggtacaaagagGAGGTAGTCActcaaaatcatgttaaacactattcttgcacacagagtgagccaATGCAACTTTATTATGTAACTTGTTTAGCAAATATTTTCTCCTGAACCTATTTacgcttgccataacaaaggggttgaatacttattgactcaagacatttcagattttcatttataatgaatttgtaaaaaaaactCTAAAAACATTCCACATTGACGTTatagtgtgtgtaggccagtgacacaaaatgtggaaaaagtcaaggggtgtgaatactttctgaagtcactgtataACAAAAGATGGGCATCCTGTAATCATCTCCATTCTACTGTTCTATTTAATTCTGTGTTCATGGAAAAATATATTGTCTGTAAACAtattctcaattgaatccattttaaattcaggttttaacataacaacatgtggaaatagtctaggggtgtgaatactttatgaaaGCACTGTATAATGTGAAAGAGCAGGCTAGGCTATTCTGTAGGCTACTTGAGTCTGATGTAAAGATTACAAAGATGCCCCTGTCCAGAAACGGCCCCTAGCCTCTACACCCCGTACCACAGGCTATGGTTGAATCCCAGTTCTCCACCCTCGTCCCTAGGTGTGCACCATCATGGATTTAAAAGCACTGGATTGGTGTAAGATTCCACCACTATTATGGGGAATGTGCAAGTGCACACTtggggagaagggtggagaatcgGGATGCAGCCTAGGTCTGTTTCTTGACTAGGTCCATTCTAGGACATTCTAGAGGAAGTCGGTTTGTGGACCATGGTTGCTAAAAATAAAGTTTTCTATTctacgtttta
>XM_021624302.2
GGGTTCTTGGTTGAACGTGGACGCAACGTGGACGCACGCCGTGCAGTCCTTGCACACCAGGCGAAATGCAGTGGAAAGAGTGTGTCCCTTATTTTCATGGACAGATTTTGGGTGAAGTaaaacctctcgcttcgcctcttcctctctgccataACACAAAAACAGTTATGCAACCTATTTTCAACTGATCAATTATTTGGTATGTGTAGTCATCTTGTATAACTTTCGCTGTGTAACTGGAGATGACAGAAACTACACCTCCCAAATAACATTGCGATTAATTGCTTCTCTAGTTTCACGGAGTATAGCCAGTTCACTACTTAAAAATCCCGTTTCATGACTGACTTTATTTATAAACAAATACTTATCCGTTCTCATGGCGGAATCTGCAGCCTGTCCTGCATTCCAGCTTGGAAAACCTCGATATGATCAGAGTTCATTTCTTGGCCGGCTGAAACACTTTGTAGAGATCATTGACCCCAGCACACTCTTTGTGTCTGAGAGACGATTGACAGAATGCATTAAGCTCCTGGATGAATTTAAACACGGAAAACTACCACCTGGAGTTTCTGATCTACAGCTATGGGAAGCCCAAAAGGTCACGCAGGCCATCATTCATCCTGACACAGGAGAGAAGATTTTCATGCCTTTTCGAATGTCAGGTTATGTCCCATTTGGAACACCAATTGTTGTGGGCCTTCTTCTTCCAAATCAGACTGTGGTATCCACCATTTTCTGGCAGTGGCTTAACCAGAGTCACAATGCCTGTGTCAACTACTCAAACCGCAATGCTACTAAGCCTACACCGACATCCACGTTTCTTCAAGGTTACTTCGGAGCTGTGACCAGTGCTGTCTCTCTTGCGGTAGGACTGAATGTACTGATTCAGAAAGCCAACAGGTTGAGTCCAGCGACCCGAATGATAATACAGAGACTCATCCCTTTCCCAGCTGTGGCCAGTGCCAACATTTGCAACGTGGGCCTCATGAGGCACAATGAGTTGTCGGAGGGCGTCAACGTGCTGGACGAAAATGGGAACATATTGGGCTCCTCAAAGATTGCTGCCAAACATGCAATTATGGAGACAGCCTTTACCAGAGTGGTCCTCCCGATGCCAATATTTGTCCTTCCTCCCATCATTATGTCCTACCTAGAAAAACTTCCATTGCTGCAGATGAATCGGAGGCTGTTGCTGCCCATCCACAGCCTGGTGTGTCTGGCTACCTTCAGCCTCTCCCTGCCCCTGGCCATCAGCCTATtcccacagatgtctcagATAGAGGTGTCTCAGCTTGAGCCGGAGATCGCAATGGCAACCGATTGCAAGGTGGTGACCTACAACAAGGGACTGTGATGACTGGCCCccgaggagagagtagaggacagggcACTGAACAGAGGTGCAAATTAGCCTCCTTTTTGACTGGCTGTAACGGACACTCCAGGTCTCTCTctggtgtagggtgaagttgcccctagacgctgatcttgg

Function

NR:

description
sideroflexin-5-like isoform X2

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006812 cation transport biological_process
GO:0016020 membrane cellular_component
GO:0008324 cation transmembrane transporter activity molecular_function

KEGG:

id description
K23503 SFXN5; sideroflexin-5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021624301.2 False 3624 mRNA 0.42 14 58935530 58959234
XM_021624302.2 True 1492 mRNA 0.48 14 58935535 58957128

Neighbor

gene id symbol gene type direction distance location
LOC110537867 LOC106600640 coding upstream 18121 58875401 ~ 58917409 (+)
LOC110538920 NA coding upstream 62079 58850736 ~ 58873451 (+)
LOC110538919 atp8a1 coding upstream 110959 58691117 ~ 58827450 (+)
rab28 LOC106600633 coding upstream 311073 58575601 ~ 58625910 (+)
LOC110538918 nkx3-2 coding upstream 388933 58545146 ~ 58546597 (+)
LOC110537870 LOC100380866 coding downstream 2533 58961767 ~ 58975136 (+)
LOC110537871 LOC106604470 coding downstream 93095 59052329 ~ 59106006 (+)
sez6l2 sez6l2 coding downstream 274120 59233354 ~ 59343106 (+)
kctd13 LOC106600645 coding downstream 391545 59350779 ~ 59389927 (+)
hirip3 hirip3 coding downstream 439501 59398735 ~ 59422218 (+)
G1093680 NA non-coding upstream 42367 58892952 ~ 58893163 (+)
G1093678 NA non-coding upstream 44634 58890622 ~ 58890896 (+)
G1093544 NA non-coding upstream 260723 58674579 ~ 58674807 (+)
G1093541 NA non-coding upstream 262978 58672342 ~ 58672552 (+)
G1093713 NA non-coding downstream 22022 58981256 ~ 58981520 (+)
G1093714 NA non-coding downstream 23039 58982273 ~ 58982472 (+)
G1093715 NA non-coding downstream 23401 58982635 ~ 58982914 (+)
G1093719 NA non-coding downstream 27213 58986447 ~ 58987204 (+)
G1093810 NA non-coding downstream 159488 59118722 ~ 59118929 (+)
LOC118937686 NA other upstream 713340 58216142 ~ 58222215 (+)
LOC110537841 mtmr4 other upstream 1020698 57893341 ~ 58071571 (+)
LOC110537831 dhx33 other upstream 1817603 57112902 ~ 57118165 (+)
G1091235 NA other upstream 2182583 56752418 ~ 56752947 (+)
G1091217 NA other upstream 2209527 56725607 ~ 56726003 (+)
G1093909 NA other downstream 582324 59541558 ~ 59542603 (+)
G1094218 LOC100380853 other downstream 1071769 60031003 ~ 60034020 (+)
G1095244 LOC108238713 other downstream 1426430 60385664 ~ 60385973 (+)
LOC110539079 LOC106600700 other downstream 1737453 60696612 ~ 60777061 (+)
G1095209 NA other downstream 1857257 60816491 ~ 60818897 (+)

Expression


Co-expression Network