LOC110537870 (LOC100380866)


Basic Information

Item Value
gene id LOC110537870
gene name LOC100380866
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 58961767 ~ 58975136 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021624305.2
GTTGAAAGGTCGAAGGTTGTTGTGAAGATGGCTGCCCCCCAAGATGACATGTTTTCGCTCTGCGTCGACCCCACTAAAGTTAGCAGTTGTGTGGAAGTCCGATTTATTGACAAGATTAAGGGCAAGGGATTATTCGCCAAGAAGGCCATCAAGAAAGGAGACACAATTTTTATTGAGCGCCCTCTTGTCTCTGCCCAGTTCTTGTGGAATTCCCTGTACAAGTACAAAGCCTGTGAGTTTTGCTTGCGTGCTCTGGAGACAGCCGAGGATAATGCCCGTAGACTCAGTGGCATCCCTGACCTCAGTCTACCCCACCCCGAGCTGTGCAAAGTGCATCCAGAGCTGCACCAAGCTTGCCCACAATGCCAGGTGATGTACTGTAGCAACGAGTGTCGGCAGGCTGCGGCAGACCAGTACCATCGGGCCCTGTGCCTAGGCACCTCCCAAGAGGACCCAAACCACCCCATCAGCAAACTAAAGGATGCCTGGAGGAGCATGCACTACCCTCCTGAGACCTCCAGCATCATGCTCATGGCCAGGATGGTGGCCACTGTCAAACAGGCCCAGGACAAAGGGCACTGGCAGAAGCTGTTCTCTCAATTCTGCAGCCGTGCGGCCAACGAGGAGGAGGAGATTGCACATAAGCTGCTGGGAGAGAAGTTCCAGGGGCAGTTGACCGTACTACGAACCCTGTTTACAACGGCACTTTACGACGATCATCTCAATCGGTGGTTTACACCTGAGGGATTTCGTTCCCTCTTCTCCCTTGTGGGGACCAATGGACAGGGTATAGGTACCAGTTCTCTCAGCCAATGGGTTCATGCATGTGATGCTTTGGCGCTGACTAGCCAGCAGAGGGAGCAATTGGATTCCTTCATTGACCAACTATACAAGGATGTCGAGAAAGAGACCGGTGACTTTCTGAACTGCGAGGGTTCCGGGCTCTTCCTACTGCAAAGCGCATGTAACCATAGCTGCATTCCGAATGCGGCGGCATCTTTCCCGAGCAACAACTTCTTGCTTCATCTCAGTGCCCTAAGTGACATCAGCCCTGGAGAGGAGATCGGTATCAGTTACTTGGACTGCTGTCAGTGTGACAGGAGCCGTCATAGCAGACACAAAATCCTGAGGGATAACTACCTGTTCATCTGCTCGTGTCCAAAATGTGTGTCTCAGATGGATGAGTTGGATCTGACGtcggacgaggaggaggaggaggaggaggaggggggggaggcCGAGGGGGATGACATGGAGGACGAGATGACGGACGTCTGAGGGGTAAAAAGACCCGCTCTGTTCCCActcaccccctcccctctaaTCCACTCACTCAGCCATGCTAGCTAACTGCACAGTGAAAACCAACCTTAAAGAAGACCTTGCATATCGCCAAACATATCAAATTCGTTATGtaactaaatatttttttcaagGAAAATAAGTCACTCACTGGCCCTACTCTTTGGATCTCCCCCTTGAAAAGCGTTTGCTCACATTACTGTACAGTAGCAGACGTTTTGGCTGTCACCTCTCGTGTATCTTCTGCTTATTGGAAAAGTTTACATGGAAGACATCCAGTTCACTAATGTTTTTCATTTATCACCGTTTTTAGTACATCTAGAATGGTAGAAACCATTAAATTGGCAAGATGTCATTTATTCCTCGTGTTGAGTGCATTAGGTGTAGATTAATTCAGACAGAATTATATAGTGCCTGTTCTGCGAAGGATAATTCACTTGGCAAACCAAGTAGTGATAACATTACAGTATAGAAGAAGTAACTGACCCTAATTAAGTACATATATTTTCATATGAGATTAGAAACGGTCATTGCAAGCGATGAGGTAACCATCAACCAGGATATTACTCTGAGACCTTGAGCTGTTGAAAGCTTTTGTCAGTTAACTATTTGCCCTTTATTGAGTAGAGCAGATTTTCACTGTTATTTGACGAATGAAATTGCTGCTACTGCCCACACATGAATCAATACAACCGCAATGACTGTAATCATCAGTGCCAACATTTTCAATGTTACCGGACAAATATGGCTAACGTCGAATGACTAACTTCAATTATCTCAGTTGGCATTTCAGAGCAGTGGTGCATGAGAACAAATTGCTTTTGATGTCACACAATGAAATGCTGCAAtgtaagagcagcagtaaataatgTATGAGAATCCTAGAAATTATAATTTTTATTGCTCTGGCATAAACCATTGAGATTAAAATGT

Function

NR:

description
SET and MYND domain-containing protein 5-like

GO: NA

KEGG:

id description
K24635 SMYD5, ZMYND23; SET and MYND domain-containing protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021624305.2 True 2235 mRNA 0.47 13 58961767 58975136

Neighbor

gene id symbol gene type direction distance location
LOC110537868 LOC106600641 coding upstream 2533 58935530 ~ 58959234 (+)
LOC110537867 LOC106600640 coding upstream 44358 58875401 ~ 58917409 (+)
LOC110538920 NA coding upstream 88316 58850736 ~ 58873451 (+)
LOC110538919 atp8a1 coding upstream 137196 58691117 ~ 58827450 (+)
rab28 LOC106600633 coding upstream 337310 58575601 ~ 58625910 (+)
LOC110537871 LOC106604470 coding downstream 77193 59052329 ~ 59106006 (+)
sez6l2 sez6l2 coding downstream 258218 59233354 ~ 59343106 (+)
kctd13 LOC106600645 coding downstream 375643 59350779 ~ 59389927 (+)
hirip3 hirip3 coding downstream 423599 59398735 ~ 59422218 (+)
antkmt fam173a coding downstream 447700 59422836 ~ 59436071 (+)
G1093680 NA non-coding upstream 68604 58892952 ~ 58893163 (+)
G1093678 NA non-coding upstream 70871 58890622 ~ 58890896 (+)
G1093544 NA non-coding upstream 286960 58674579 ~ 58674807 (+)
G1093541 NA non-coding upstream 289215 58672342 ~ 58672552 (+)
G1093713 NA non-coding downstream 6120 58981256 ~ 58981520 (+)
G1093714 NA non-coding downstream 7137 58982273 ~ 58982472 (+)
G1093715 NA non-coding downstream 7499 58982635 ~ 58982914 (+)
G1093719 NA non-coding downstream 11311 58986447 ~ 58987204 (+)
G1093810 NA non-coding downstream 143586 59118722 ~ 59118929 (+)
LOC118937686 NA other upstream 739577 58216142 ~ 58222215 (+)
LOC110537841 mtmr4 other upstream 1046935 57893341 ~ 58071571 (+)
LOC110537831 dhx33 other upstream 1843840 57112902 ~ 57118165 (+)
G1091235 NA other upstream 2208820 56752418 ~ 56752947 (+)
G1091217 NA other upstream 2235764 56725607 ~ 56726003 (+)
G1093909 NA other downstream 566422 59541558 ~ 59542603 (+)
G1094218 LOC100380853 other downstream 1055867 60031003 ~ 60034020 (+)
G1095244 LOC108238713 other downstream 1410528 60385664 ~ 60385973 (+)
LOC110539079 LOC106600700 other downstream 1721551 60696612 ~ 60777061 (+)
G1095209 NA other downstream 1841355 60816491 ~ 60818897 (+)

Expression


Co-expression Network