LOC110537871 (LOC106604470)


Basic Information

Item Value
gene id LOC110537871
gene name LOC106604470
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 59052329 ~ 59106006 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939515.1
ATGACGTCAGgctcccctgcctcagccagcTTGTCTGGCTTTCATGTCTCCTCCGGATCGCCgtgctcccctgcctcagccggctcgtcgggcttTCATGCCTCCTCCAGATCGCCAGGCACCCCTGCCTCAGCTGGCTTGTCAGGCTTTCATGCCTTAGCCGGATCGCcgggctcccctgcctcagccggctcgtcaggctttcATGCCTCCTCCAGATTGCCAGGCACCCCTGCCTCCACCGGCTCGTCAGGTTCTCTTGCGTCAGCCGggtcgccaggctcccctgcctcaaccAATCTGTCAGCGTCCCACGCCCCAGCTGACTCGACAGGTTCCCGTGCCTCAGtaTCTGGACTGAGCACCGGCGCAGAAGAAGACTCCGgccatggagcaggactggacgCCGTGTTTGGACTGGACaccggtgcagaggaaggctcctgccatggagcgggactggacgacGTGTCTAGAAGCTCCGAACCGTCGACcttcgctggaggttccggactgtcgACCATCGCTGGAGGTTCCGAACCTGGCActgtcgtaggaggttccggactCTCCACCACCCTCCCCATCCCCTTCTCTCCTGTAGCCCTGCATGAGGTCCTGTCTGCAGGCAGAGACTGTCTGGTGGCGGGGGACTCATGCTCCAGCGATGAGACCTGCAGCCCACGTCTGCGGACCCTGCGTCAGTGCGTGGCGGGCGACGGCAGCATGAAGCTGGGCCCCGGGGCCCGGAGCCAGTGCGCCAACGCCGTCTCAGCCCTGATTTCCAGCCCCCTGCATGGCTGCCAGTGCAAACGGGGCATGAAGAAGGAGAAGAACTGCCTCAGCATCTACTGGAGTCTCCATCAGTCTGTCATACACGGACTCAACCTGGTAGAGAGTTACCCTTACAAAGCTGTGGAGAGAGACTACGACTCCGTTCGTCTGGCCTCCATCACGGCTGACTCTGAGGCCAACGTGGCGACGGTGAACCGTTGCCTGGACGCAGCCAAGACGTGTAACGTTGACGACCTGTGCCAGAAGCTCCGCACAGAGTACGTATCTGCCTGCATCAAACCCTTGGCCAAGTCGGGCCTCTGCAACAAGGCCAAGTGTAATAAGGCCCTACGCCGGTTCTTTGATCGCGTCCCTCCAGCCTACACACATGAGCTGCTTTTCTGCCCTTGCACGGACATGGCGTGCGCCGAGCGACGCAGGCAAACCATTGTTCCCGGCTGCTCCTATGAGGGCTCAGACAAACCCAGCTGCCTCATACAGATGAGTATGTGCAAGGGTGACTATGTGTGCAGGTCCCGTCTGGCTCAGTTCCAGTACGACTGCAAACCAGCCGAGTCGTCTGCCAACAGCTGCAAGCAGGGGAACTATGGAGCCTGTCTACTTGCCTACACAGGCTTGATAGGCAGTTCGATAACTCCCAACTATGTGGATAACTCCACATCTAGCGTGGCCCCATGGTGCTCCTGCTCTGCCAGCGGAAACCAGAGAGTAGAGTGCTCCGACTTCCTGGAATACTTCACCAACAACGTCTGTCTCAGGAATGCCCTCCTGGCGTTTGGGAGAGGGACAGACGTGATGCCCACGTCCAGCGAATCGAGACACCTCAGCCCAGCCACTGGCAGAGAGAGCCATGCCATCAACCCTCTGACTGCTACTGTGGAGACCACACGGAACAGTCCGGAATCAATTATTCCAACACAGGCCAGCGGAAACGACCGATTGTGGAGAGATTCTACCCTCCCGTCAGATGGGCTCCCAAACTCTGCCCCCGCACTTGGCCTACTGCCTCCAACTTCCTTTACTGGTCTTTTGGTCCTACCTCTGGTCTTATATGGTCACTAAATGAGGAAGCACTGCCAAGGACCACCCATAAAGCAGGAGTATTTGTTCACAAATTCTGGATACATTTTTGTCTTTAGCATTTAAGGCTACTCCGTCTCCTAAACATATACAGCATAGTCCTTTTCCTATTTTTTGTGTGAGTGGTTCTGTTGCACTTGCAAGTCCCTTAGGTGTACGACttggagagactgagacagattGGTTTCAATCTGTATACTTGTACATTGTTATCGCTTCGAGTCAAGATGAAAGTACTTTTTAGTGGACTAACCTACCATCCAGCTATCCAAGCACATCCAAGCACAGGACTAAATTCTACAAATGCCATCGGGAACTGCACGGTTATTCTTTAAGATCTATATATAAACGGAAAGCTCACGAGAAACGGACTCTAGTGAACTGTCTTTATTTTGTACTCAACTGCACAAACTGATTGGAAAAGACCCTTGCGGATATAAGGGCTTTAATACCGCTCTCTTCGACTTGACTGAAGGAGGAACATTGTTTCTGATTAATACTGGAATGGTAGAGATGGACAATGGAGCTACGGCTTATTCATCCATTCTGGACAAATACACTGACTCTGATCATTCCAAGTGCTGTCGGCTGCAAGAGATGTGGAAACTTTAGAATACGTAGGATAGCTCTGACCTAATGATTATCATGCACGTGGTGAAGATTGGGCTCTTTGTCATGCTGTCATCGCCAGTTCATTTGTTCTCGCTAATGCTTAGCTAAGTGTTCATTATAAAATTCTCAAAGGGTATCTGAATTAGTATGCCATATAGGAACAAGGGCTTGTGTCTCAACATTTTGGGCAATATTGAACCCTTTTATCACTACCGAGCCTAGCCAAGACAGGCCGCAATGCCctcgggcggcagggtagcctagtggttagagcgttggactagtaaccggaaggttgcaagttcaaatccccgagctgacaaggtcgttctgcccctgaacaggcagttaacccactgttcctaggccgtcattgaaaataagaatttgttcttaactgacttgcctagaggtaaaatataaaaaatacacatcaaccatagttgctggaatgcacaatgtgaaaataaaatatcAGAGACAATAGCAGAATACAGTACAGTTCGTACAGTAGAAAGCGTATATGTGACCTGTTCATGGTAAGATGGTCATGAATGATGCGATGTTCAATGGGGGAAGACAATGGGTTTCTGACGACATAATATAGAGTTGGCTGGGTTTACTGTGCATTGGCAGGACAGATAAGCTActtctggtaagacgaggggtgggggtgtgtgtatttgtcaataacagct

Function

NR:

description
GDNF family receptor alpha-4-like isoform X1

GO:      GO:0004872

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939515.1 True 3185 mRNA 0.52 10 59052329 59106006

Neighbor

gene id symbol gene type direction distance location
LOC110537870 LOC100380866 coding upstream 77193 58961767 ~ 58975136 (+)
LOC110537868 LOC106600641 coding upstream 93095 58935530 ~ 58959234 (+)
LOC110537867 LOC106600640 coding upstream 134920 58875401 ~ 58917409 (+)
LOC110538920 NA coding upstream 178878 58850736 ~ 58873451 (+)
LOC110538919 atp8a1 coding upstream 227758 58691117 ~ 58827450 (+)
sez6l2 sez6l2 coding downstream 127348 59233354 ~ 59343106 (+)
kctd13 LOC106600645 coding downstream 244773 59350779 ~ 59389927 (+)
hirip3 hirip3 coding downstream 292729 59398735 ~ 59422218 (+)
antkmt fam173a coding downstream 316830 59422836 ~ 59436071 (+)
xpo6 LOC106600647 coding downstream 334225 59440231 ~ 59502350 (+)
G1093719 NA non-coding upstream 65125 58986447 ~ 58987204 (+)
G1093715 NA non-coding upstream 69415 58982635 ~ 58982914 (+)
G1093714 NA non-coding upstream 69857 58982273 ~ 58982472 (+)
G1093713 NA non-coding upstream 70809 58981256 ~ 58981520 (+)
G1093680 NA non-coding upstream 159166 58892952 ~ 58893163 (+)
G1093810 NA non-coding downstream 12716 59118722 ~ 59118929 (+)
G1093820 NA non-coding downstream 26180 59132186 ~ 59132476 (+)
G1093823 NA non-coding downstream 37272 59143278 ~ 59143511 (+)
G1093874 NA non-coding downstream 105784 59211790 ~ 59212987 (+)
G1093974 NA non-coding downstream 397410 59503416 ~ 59503617 (+)
LOC118937686 NA other upstream 830139 58216142 ~ 58222215 (+)
LOC110537841 mtmr4 other upstream 1137497 57893341 ~ 58071571 (+)
LOC110537831 dhx33 other upstream 1934402 57112902 ~ 57118165 (+)
G1091235 NA other upstream 2299382 56752418 ~ 56752947 (+)
G1091217 NA other upstream 2326326 56725607 ~ 56726003 (+)
G1093909 NA other downstream 435552 59541558 ~ 59542603 (+)
G1094218 LOC100380853 other downstream 924997 60031003 ~ 60034020 (+)
G1095244 LOC108238713 other downstream 1279658 60385664 ~ 60385973 (+)
LOC110539079 LOC106600700 other downstream 1590681 60696612 ~ 60777061 (+)
G1095209 NA other downstream 1710485 60816491 ~ 60818897 (+)

Expression


Co-expression Network