kctd13 (LOC106600645)


Basic Information

Item Value
gene id kctd13
gene name LOC106600645
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 59350779 ~ 59389927 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021624316.2
AAACGCCgttaaacctcatcgaagaaTAAACTAATCTTGTCGATGACGTTAGCTAGTCAAGCAAGCTGAACATGTCAAAATGACCTCGTCCTAATTAACCACAGTATTTCCCTAATTCGTGCAACCTTGTTAAGTGTTTTCTTTTTCCGTTGTTTTAAATTCTCATTTTAATAGCATTGGAGATTTGGAGCCACCACAAAAGTTAaccgctaatgttagctagcaagtcgGCTAGCCTGAAACTTCTGTAACTGCAAGCACGCCTGATGTCTGCCGAGGCTTCCGCAGGGAGTGTGGCAGCTGCCTCCATCCTCGCCACCCAGGCCTCTGGCCATTGCAGCGAGGAGAAGGGGGTTGGAGGTGGTCTGGCGGGGAGTAAATATGTGAAGCTGAATGTTGGGGGCTCCCTGCATTACACCACAGTACAGACCCTGAGCAAAGAGGACAGCTTACTAAGGAGCATGTGCAATGGAGGAGCAGAGGTCACCATAGATTCGGAGGGCTGGGTAGTGTTGGACAGGTGTGGTCGCCATTTTGGCTTGGTGCTGAACTTTATGCGGGACGGCTCGGTACCGCTTCCGGAGTCCCACCGAGAGCTGGAGGAAGTTCTGAAGGAGGCTCAGTACTACAGGGTCCAGGGGCTAGTCCAGCACTGCACGTCTGCCATGCAGAAACAAAGGGATGTCTATGAGGGGGTTTGCCGCATTCCCATGATTACCTCAACCAAAGAAGAACAGAGAATGATAAACACCTGCAGGAAGCCTGTAGTAAAACTACAGAACAACCGAGGGAACAACAAGTATTCGTACACcagTAACTCGGACGACAACCTGCTGAAAAACATTGAGCTGTTTGATAAACTGGGGCTGCGCTTCAACGGGCGTGTCCTGTTTGTCAAGGACGTGCTCGGGGACGAGATCTGCTGCTGGTCCTTCTACGGTGAGGGCCGCAAGATCGCTGAGGTGTGCTGCACATCCATTGTCTACGCAACTGAGAAGAAACAGACCAAGGTGGAGTTTCCTGAGGCCCGCATCTTTGAGGAGACCCTCAACATCCTCATCTATGAGAATGGTCGTGGTTCTGGCCCGGGGGGCGTGGCCCTTTTGGAGTCATCATCGCCTGGGGCCAGCCAATCAGAGGAGGAGGGGGCCAGCGCAGGGGACCGAAGGGTGAGGAGGATCCACGTGAGGAGGCACATCATGCACGACGAGAGAGGACACGGCCAACAGACTGTGTATAAGGACTGAGAAAAAAGAGTGAACTgtggggataaagagagggagtTAGCGGCAGGGTAAAGATACAGGTTGTTTGGCGGCGGGGTGTTTGCATGGAGAGGTTAGGGCGGATGTTTAGTAGGGGGCGTGGGACAGGTTCTTATATAAGGAAGCAGATGTGGGACTTCAAGATGCTTATTATCAAGGACTgagatattattattttttggtgCCCGATTGGGAaaacaacccctaacccaaaaGGTGGGACTAATACACTAATGAATGTGCACAATTATGGGAGAAAGGTAGCGAGAATTGGAACACAGCATTGGTCTGCAAATACCTAGGGGCTAGATTGGGCTATCTCCCGACCAGGTTTGGGTGGTGGTAATGTGACTGGAAGATGGAGGGGTTCACTGGTTCAACTAAGGTACTTTAACTGCACTAAAAGGGAACCGGGATGGTGGAGTGAGGTGGTGGTAGTAGGTTAGAGACAACGAGACTGCTGAGCATTGCTGGATGTTTATTCCTTTTGAATTGATTACTGTTGTATGTATTTGTCtctatttattattatttggtTAATTTGTCCTTTTATATAACtttaaatacattatttattatttattctgTATAGATGTTGGTGGGAATTGTATGTGTTGAGGGTGCTGATCTGATTTGATATTTTGACCAGTTTATGCACTGATCACTTTCCTAACCGACACTTGATGCCATGCTCATCCATGGTCATGTTTAACTGCCATGTGAGTTCATGTGTACACATTGACTTGCTAAATcatgttttaatatttttttgtccATGATGCTACCGTGCCTAATTGAAACAGGATTTCATGTTGTCTGATGGTGAAATCAGGCTTTATTTGGCTCTCTAAAAATCATGTTTAAGTCTTTGTATTCAATTTGGTACATATTGCTTCCTCGCACTAAAGTCTgatcacaaaaaaaataaaaaataacaggtGAAATGAAGGAAGTGATCCGAACCTGGGAAGTGTTTTATGTCCCATGGGTTATTGGACACTTGTTAACCCATAGAAGCATGTAATCTGGCAGGTAAATCTCACATCCTAATTCCCGTCAAATGTTCTTTGTGATATTGTAACTATCTGGGGTTTTGGATATTTTATGGACCATCAACATTCTCAATAAAAATCTAAACCCTG
>XM_036937905.1
aaagtggtgatcctaactgtgaaactgagtttaaaagtatttggctgaggtgtatatgtaaccttccgacttcaactgtatgtgtgttattTATGTATACCAGTGTTTCCCAATATTTTATTCTAGGATCACTCAGGCTTGCACATTTTTGTTCCTGTCTAGCACTACCACACTTTGTACAACTAGGCAACTAATGGTCACGAATGTTGCGAATCAGGTTTGCTAATGCTGGAAGAAAACATGTAGTCCTATGGGAGCCAAAGGAACGGATTGGAAACACTGGGCTGTGTTCAGCAGGACATAACGGCTGGGTAGTGTTGGACAGGTGTGGTCGCCATTTTGGCTTGGTGCTGAACTTTATGCGGGACGGCTCGGTACCGCTTCCGGAGTCCCACCGAGAGCTGGAGGAAGTTCTGAAGGAGGCTCAGTACTACAGGGTCCAGGGGCTAGTCCAGCACTGCACGTCTGCCATGCAGAAACAAAGGGATGTCTATGAGGGGGTTTGCCGCATTCCCATGATTACCTCAACCAAAGAAGAACAGAGAATGATAAACACCTGCAGGAAGCCTGTAGTAAAACTACAGAACAACCGAGGGAACAACAAGTATTCGTACACcagTAACTCGGACGACAACCTGCTGAAAAACATTGAGCTGTTTGATAAACTGGGGCTGCGCTTCAACGGGCGTGTCCTGTTTGTCAAGGACGTGCTCGGGGACGAGATCTGCTGCTGGTCCTTCTACGGTGAGGGCCGCAAGATCGCTGAGGTGTGCTGCACATCCATTGTCTACGCAACTGAGAAGAAACAGACCAAGGTGGAGTTTCCTGAGGCCCGCATCTTTGAGGAGACCCTCAACATCCTCATCTATGAGAATGGTCGTGGTTCTGGCCCGGGGGGCGTGGCCCTTTTGGAGTCATCATCGCCTGGGGCCAGCCAATCAGAGGAGGAGGGGGCCAGCGCAGGGGACCGAAGGGTGAGGAGGATCCACGTGAGGAGGCACATCATGCACGACGAGAGAGGACACGGCCAACAGACTGTGTATAAGGACTGAGAAAAAAGAGTGAACTgtggggataaagagagggagtTAGCGGCAGGGTAAAGATACAGGTTGTTTGGCGGCGGGGTGTTTGCATGGAGAGGTTAGGGCGGATGTTTAGTAGGGGGCGTGGGACAGGTTCTTATATAAGGAAGCAGATGTGGGACTTCAAGATGCTTATTATCAAGGACTgagatattattattttttggtgCCCGATTGGGAaaacaacccctaacccaaaaGGTGGGACTAATACACTAATGAATGTGCACAATTATGGGAGAAAGGTAGCGAGAATTGGAACACAGCATTGGTCTGCAAATACCTAGGGGCTAGATTGGGCTATCTCCCGACCAGGTTTGGGTGGTGGTAATGTGACTGGAAGATGGAGGGGTTCACTGGTTCAACTAAGGTACTTTAACTGCACTAAAAGGGAACCGGGATGGTGGAGTGAGGTGGTGGTAGTAGGTTAGAGACAACGAGACTGCTGAGCATTGCTGGATGTTTATTCCTTTTGAATTGATTACTGTTGTATGTATTTGTCtctatttattattatttggtTAATTTGTCCTTTTATATAACtttaaatacattatttattatttattctgTATAGATGTTGGTGGGAATTGTATGTGTTGAGGGTGCTGATCTGATTTGATATTTTGACCAGTTTATGCACTGATCACTTTCCTAACCGACACTTGATGCCATGCTCATCCATGGTCATGTTTAACTGCCATGTGAGTTCATGTGTACACATTGACTTGCTAAATcatgttttaatatttttttgtccATGATGCTACCGTGCCTAATTGAAACAGGATTTCATGTTGTCTGATGGTGAAATCAGGCTTTATTTGGCTCTCTAAAAATCATGTTTAAGTCTTTGTATTCAATTTGGTACATATTGCTTCCTCGCACTAAAGTCTgatcacaaaaaaaataaaaaataacaggtGAAATGAAGGAAGTGATCCGAACCTGGGAAGTGTTTTATGTCCCATGGGTTATTGGACACTTGTTAACCCATAGAAGCATGTAATCTGGCAGGTAAATCTCACATCCTAATTCCCGTCAAATGTTCTTTGTGATATTGTAACTATCTGGGGTTTTGGATATTTTATGGACCATCAACATTCTCAATAAAAATCTAAACCCTG

Function

NR:

description
PREDICTED: BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021624316.2 False 2407 mRNA 0.46 7 59350779 59389927
XM_036937905.1 True 2212 mRNA 0.45 6 59365633 59389927

Neighbor

gene id symbol gene type direction distance location
sez6l2 sez6l2 coding upstream 7673 59233354 ~ 59343106 (+)
LOC110537871 LOC106604470 coding upstream 244773 59052329 ~ 59106006 (+)
LOC110537870 LOC100380866 coding upstream 375643 58961767 ~ 58975136 (+)
LOC110537868 LOC106600641 coding upstream 391545 58935530 ~ 58959234 (+)
LOC110537867 LOC106600640 coding upstream 433370 58875401 ~ 58917409 (+)
hirip3 hirip3 coding downstream 8808 59398735 ~ 59422218 (+)
antkmt fam173a coding downstream 32909 59422836 ~ 59436071 (+)
xpo6 LOC106600647 coding downstream 50304 59440231 ~ 59502350 (+)
nme4 LOC100301668 coding downstream 118641 59508568 ~ 59539373 (+)
ccdc137 ccdc137 coding downstream 156192 59546119 ~ 59558479 (+)
G1093874 NA non-coding upstream 137792 59211790 ~ 59212987 (+)
G1093823 NA non-coding upstream 207268 59143278 ~ 59143511 (+)
G1093820 NA non-coding upstream 218303 59132186 ~ 59132476 (+)
G1093810 NA non-coding upstream 231850 59118722 ~ 59118929 (+)
G1093719 NA non-coding upstream 363575 58986447 ~ 58987204 (+)
G1093974 NA non-coding downstream 113489 59503416 ~ 59503617 (+)
G1093979 NA non-coding downstream 126114 59516041 ~ 59516951 (+)
G1094003 NA non-coding downstream 187453 59577380 ~ 59577673 (+)
G1094009 NA non-coding downstream 196539 59586466 ~ 59587553 (+)
G1094010 amdhd2 non-coding downstream 201784 59591711 ~ 59593406 (+)
LOC118937686 NA other upstream 1128589 58216142 ~ 58222215 (+)
LOC110537841 mtmr4 other upstream 1435947 57893341 ~ 58071571 (+)
LOC110537831 dhx33 other upstream 2232852 57112902 ~ 57118165 (+)
G1091235 NA other upstream 2597832 56752418 ~ 56752947 (+)
G1091217 NA other upstream 2624776 56725607 ~ 56726003 (+)
G1093909 NA other downstream 151631 59541558 ~ 59542603 (+)
G1094218 LOC100380853 other downstream 641076 60031003 ~ 60034020 (+)
G1095244 LOC108238713 other downstream 995737 60385664 ~ 60385973 (+)
LOC110539079 LOC106600700 other downstream 1306760 60696612 ~ 60777061 (+)
G1095209 NA other downstream 1426564 60816491 ~ 60818897 (+)

Expression


Co-expression Network