nme4 (LOC100301668)


Basic Information

Item Value
gene id nme4
gene name LOC100301668
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 59508568 ~ 59539373 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021622421.2
GGACTCGTGATTTCTTTTAAAGGAGCATTACTGACTTCAACAGGTTGTTGAATatgttgaagaatatcacaagtCGATTATAACTTTGGTTTGTTGAAATAATGGTTATATTTCAAAGGTGTGCGCTGAAAAACCTTATCCTGCCGAGTCCTTACTGTCGGGGTTGGGGAGTTCTACCAGCGAGTAAAAGTTATATCACTGAGTTCGCATTTTTTCTCCTCCTTGGGCATCGATGCACTGGATACAGTACCATATCAGaaacgtggctcactggagagacgctatccgaggcggtgcagccaacgggtttctccacgcatcgcgcagacagaaacaaacatctttctgGGATCCCTGGTGTGAGAGAACGTACTCTTATTGCAGTGAAACCAGATGGGGTCCAGCGCCGCCTTGTGGGACAGATAATGCAACGCTTTGAGCAGAGAGGCTTCAAACTGGTGGGCATGAAGATGCTGCAGGCATCAGAGGAGCTGCTCTCTCAGCACTACCAGGAGTTAAGGAGGAAGCCCTTTTACCCCAGTCTCCTGTACTACATGACCTCTGGTCCCATAGTTGTTATGGTGTGGGAGGGTCATAATGTGGTCCGGACATCACGGATCATGGTAGGAGACACCAACCCATCTGAGGCCCAAGCAGGCACTGTCCGGGGGGATTTCAGCATTCACATCAGCAGaAATGTGGTCCATGCCAGTGATTCAGTAGAGGGGGCTCAGAGGGAGATCCAGCTGTGGTTTCATCGAAAGGAACTGATGGATTGGGACTGCTATGACCACAATAGCACCTACCAGCTTTGAGAACGAGATGGAAGGCAGAGATTGAAAGAGAGTGTGAACAAGTTCCTGTTttctggttttgaccattctgcctgcccagACCCGGAGCCTGCCCGCTGTCCTGTACCTTGTCCCACCACActagattattgacctctgcctgccctgagactacatgccgttctgtaccttttgaattctgatctggattactgacctctgtctgcccttgacctgtcattttgcCTGCCCTCTGTTCTAGAAATAAACTTTTGtcacttcga
>XM_036936691.1
GGACTCGTGATTTCTTTTAAAGGAGCATTACTGACTTCAACAGGTTGTTGAATatgttgaagaatatcacaagtCGATTATAACTTTGGTTTGTTGAAATAATGGTTATATTTCAAAGGTGTGCGCTGAAAAACCTTATCCTGCCGAGTCCTTACTGTCGGGGTTGGGGAGTTCTACCAGCGAGTAAAAGTTATATCACTGAGTTCGCATTTTTTCTCCTCCTTGGGCATCGATGCACTGGATACAGTACCATATCAGaaacgtggctcactggagagacgctatccgaggcggtgcagccaacgggtttctccacgcatcgcgcagacagaaacaaacatctttctgGGATCCCTGGTGTGAGAGAACGTACTCTTATTGCAGTGAAACCAGATGGGGTCCAGCGCCGCCTTGTGGGACAGATAATGCAACGCTTTGAGCAGAGAGGCTTCAAACTGGTGGGCATGAAGATGCTGCAGGCATCAGAGGAGCTGCTCTCTCAGCACTACCAGGAGTTAAGGAGGAAGCCCTTTTACCCCAGTCTCCTGTACTACATGACCTCTGGTCCCATAGTTGTTATGGTGTGGGAGGGTCATAATGTGGTCCGGACATCACGGATCATGGTAGGAGACACCAACCCATCTGAGGCCCAAGCAGGCACTGTCCGGGGGGATTTCAGCATTCACATCAGCAGaAATGTGGTCCATGCCAGTGATTCAGTAGAGGGGGCTCAGAGGGAGATCCAGCTGTGGTTTCATCGAAAGGAACTGATGGATTGGGACTGCTATGACCACAATAGCACCTACCAGCTTTGAGAACGAGATGGAAGGCAGAGATTGAAAGAGAGTGTGAACAAGGTAGAATGACCATCAGGAACAGTGGCCCCATACCTAACTCTGTCCTGCTTGCAATACTCAGCCTTCTCCATCGTGGCAGGCTCCAATAACCAAGAGCCCCTCGCCTACTCTTATACAGTAATGTATCGTCATCACCATTCGTTTTTGGATTTAAGATCAAATGATCCATATGACACATCATTAGTTTATTTGAGGCTGATTTAATGAATATCCATTTGACCATTTAGACAGTGCTTTTATGTATTTAGTCCCTCCATTTGAAGAAATCATAAGTATTTGGTGCCATATCGCTTGGACCTAATGACTTCAAGTTTGCAACTCTACAAATTCATTGGCTGCATTTGCAATTCATTTTATGGGATGTGATCTAATAGTAACTAAATGGTGTCTGGAATCTTTTTCTTTCTAAATGAGCGGAGATGTTTCTGAACCCATccaaattgtcacaccctgatctgtttcacctgtctttgtgcttgtctccaccccccaagtgtctcccctcattatcccctgtgtatttatacctgtgttctgttgccagttcgttttgttcgtcaagcctaACAGCGTTTTCacccttgctcctgtcttttcTAAAGTTCCTGTTttctggttttgaccattctgcctgcccagACCCGGAGCCTGCCCGCTGTCCTGTACCTTGTCCCACCACActagattattgacctctgcctgccctgagactacatgccgttctgtaccttttgaattctgatctggattactgacctctgtctgcccttgacctgtcattttgcCTGCCCTCTGTTCTAGAAATAAACTTTTGtcacttcga
>XM_036936693.1
GGACTCGTGATTTCTTTTAAAGGAGCATTACTGACTTCAACAGGTTGTTGAATatgttgaagaatatcacaagtCGATTATAACTTTGGTTTGTTGAAATAATGGTTATATTTCAAAGGTGTGCGCTGAAAAACCTTATCCTGCCGAGTCCTTACTGTCGGGGTTGGGGAGTTCTACCAGCGAGTAAAAGTTATATCACTGAGTTCGCATTTTTTCTCCTCCTTGGGCATCGATGCACTGGATACAGTACCATATCAGaaacgtggctcactggagagacgctatccgaggcggtgcagccaacgggtttctccacgcatcgcgcagacagaaacaaacatctttctgGGATCCCTGGTGTGAGAGAACGTACTCTTATTGCAGTGAAACCAGATGGGGTCCAGCGCCGCCTTGTGGGACAGATAATGCAACGCTTTGAGCAGAGAGGCTTCAAACTGGTGGGCATGAAGATGCTGCAGGCATCAGAGGAGCTGCTCTCTCAGCACTACCAGGAGTTAAGGAGGAAGCCCTTTTACCCCAGTCTCCTGTACTACATGACCTCTGGTCCCATAGTTGTTATGGTGTGGGAGGGTCATAATGTGGTCCGGACATCACGGATCATGGTAGGAGACACCAACCCATCTGAGGCCCAAGCAGGCACTGTCCGGGGGGATTTCAGCATTCACATCAGCAGaAATGTGGTCCATGCCAGTGATTCAGTAGAGGGGGCTCAGAGGGAGATCCAGCTGTGGTTTCATCGAAAGGAACTGATGGATTGGGACTGCTATGACCACAATAGCACCTACCAGCTTTGAGAACGAGATGGAAGGCAGAGATTGAAAGAGAGTGTGAACAAGACCCGGAGCCTGCCCGCTGTCCTGTACCTTGTCCCACCACActagattattgacctctgcctgccctgagactacatgccgttctgtaccttttgaattctgatctggattactgacctctgtctgcccttgacctgtcattttgcCTGCCCTCTGTTCTAGAAATAAACTTTTGtcacttcga
>XM_021622422.2
GACTCGTGATTTCTTTTAAAGGAGCATTACTGACTTCAACAGGTTGTTGAATatgttgaagaatatcacaagtCGATTATAACTTTGGTTTGTTGAAATAATGGTTATATTTCAAAGGTGTGCGCTGAAAAACCTTATCCTGCCGAGTCCTTACTGTCGGGGTTGGGGAGTTCTACCAGCGAGTAAAAGTTATATCACTGAGTTCGCATTTTTTCTCCTCCTTGGGCATCGATGCACTGGATACAGTACCATATCAGGGATCCCTGGTGTGAGAGAACGTACTCTTATTGCAGTGAAACCAGATGGGGTCCAGCGCCGCCTTGTGGGACAGATAATGCAACGCTTTGAGCAGAGAGGCTTCAAACTGGTGGGCATGAAGATGCTGCAGGCATCAGAGGAGCTGCTCTCTCAGCACTACCAGGAGTTAAGGAGGAAGCCCTTTTACCCCAGTCTCCTGTACTACATGACCTCTGGTCCCATAGTTGTTATGGTGTGGGAGGGTCATAATGTGGTCCGGACATCACGGATCATGGTAGGAGACACCAACCCATCTGAGGCCCAAGCAGGCACTGTCCGGGGGGATTTCAGCATTCACATCAGCAGaAATGTGGTCCATGCCAGTGATTCAGTAGAGGGGGCTCAGAGGGAGATCCAGCTGTGGTTTCATCGAAAGGAACTGATGGATTGGGACTGCTATGACCACAATAGCACCTACCAGCTTTGAGAACGAGATGGAAGGCAGAGATTGAAAGAGAGTGTGAACAAGACCCGGAGCCTGCCCGCTGTCCTGTACCTTGTCCCACCACActagattattgacctctgcctgccctgagactacatgccgttctgtaccttttgaattctgatctggattactgacctctgtctgcccttgacctgtcattttgcCTGCCCTCTGTTCTAGAAATAAACTTTTGtcacttcga
>NM_001160497.1
ttgaagaatatcacaagtCGATTATAACTTTGGTTTGTTGAAATAATGGTTATATTTCAAAGGTGTGCGCTGAAAAACCTTATCCTGCCGAGTCCTTACTGTCGGGGTTGGGGAGTTCTACCAGCGAGTAAAAGTTATATCACTGAGTTCGCATTTTTTCTCCTCCTTGGGCATCGATGCACTGGATACAGTACCATATCAGGGATCCCTGGTGTGAGAGAACGTACTCTTATTGCAGTGAAACCAGATGGGGTCCAGCGCCGCCTTGTGGGACAGATAATGCAACGCTTTGAGCAGAGAGGCTTCAAACTGGTGGGCATGAAGATGCTGCAGGCATCAGAGGAGCTGCTCTCTCAGCACTACCAGGAGTTAAGGAGGAAGCCCTTTTACCCCAGTCTCCTGTACTACATGACCTCTGGTCCCATAGTTGTTATGGTGTGGGAGGGTCATAATGTGGTCCGGACATCACGGATCATGGTAGGAGACACCAACCCATCTGAGGCCCAAGCAGGCACTGTCCGGGGGGATTTCAGCATTCACATCAGCAGaAATGTGGTCCATGCCAGTGATTCAGTAGAGGGGGCTCAGAGGGAGATCCAGCTGTGGTTTCATCGAAAGGAACTGATGGATTGGGACTGCTATGACCACAATAGCACCTACCAGCTTTGAGAACGAGATGGAAGGCAGAGATTGAAAGAGAGTGTGAACAAGTTCCTGTTttctggttttgaccattctgcctgcccagACCCGGAGCCTGCCCGCTGTCCTGTACCTTGTCCCACCACActagattattgacctctgcctgccctgagactacatgccgttctgtaccttttgaattctgatctggattactgacctctgtctgcccttgacctgtcattttgcCTGCCCTCTGTTCTAGAAATAAACTTTTGtcacttcga

Function

NR:

description
nucleoside diphosphate kinase

GO:

id name namespace
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:0006183 GTP biosynthetic process biological_process
GO:0006228 UTP biosynthetic process biological_process
GO:0006241 CTP biosynthetic process biological_process
GO:0005524 ATP binding molecular_function
GO:0004550 nucleoside diphosphate kinase activity molecular_function

KEGG:

id description
K00940 ndk, NME; nucleoside-diphosphate kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021622421.2 False 1078 mRNA 0.49 7 59508568 59539373
XM_036936691.1 False 1680 mRNA 0.46 6 59508568 59539373
XM_036936693.1 False 1041 mRNA 0.49 7 59508568 59539373
XM_021622422.2 False 950 mRNA 0.48 6 59508569 59539373
NM_001160497.1 True 932 mRNA 0.49 6 59508624 59539373

Neighbor

gene id symbol gene type direction distance location
xpo6 LOC106600647 coding upstream 6218 59440231 ~ 59502350 (+)
antkmt fam173a coding upstream 72497 59422836 ~ 59436071 (+)
hirip3 hirip3 coding upstream 86350 59398735 ~ 59422218 (+)
kctd13 LOC106600645 coding upstream 118641 59350779 ~ 59389927 (+)
sez6l2 sez6l2 coding upstream 165462 59233354 ~ 59343106 (+)
ccdc137 ccdc137 coding downstream 6746 59546119 ~ 59558479 (+)
LOC118937690 NA coding downstream 57241 59596614 ~ 59598278 (+)
LOC110537890 NA coding downstream 59998 59599371 ~ 59611523 (+)
LOC110537886 LOC106600678 coding downstream 132844 59672217 ~ 59673882 (+)
atp6v0ca vatl coding downstream 149296 59688669 ~ 59702156 (+)
G1093974 NA non-coding upstream 4951 59503416 ~ 59503617 (+)
G1093874 NA non-coding upstream 295581 59211790 ~ 59212987 (+)
G1093823 NA non-coding upstream 365057 59143278 ~ 59143511 (+)
G1093820 NA non-coding upstream 376092 59132186 ~ 59132476 (+)
G1093810 NA non-coding upstream 389639 59118722 ~ 59118929 (+)
G1094003 NA non-coding downstream 38007 59577380 ~ 59577673 (+)
G1094009 NA non-coding downstream 47093 59586466 ~ 59587553 (+)
G1094010 amdhd2 non-coding downstream 52338 59591711 ~ 59593406 (+)
G1094084 NA non-coding downstream 146389 59685762 ~ 59686067 (+)
LOC110537889 LOC106561172 non-coding downstream 167033 59705945 ~ 59708325 (+)
LOC118937686 NA other upstream 1286378 58216142 ~ 58222215 (+)
LOC110537841 mtmr4 other upstream 1593736 57893341 ~ 58071571 (+)
LOC110537831 dhx33 other upstream 2390641 57112902 ~ 57118165 (+)
G1091235 NA other upstream 2755621 56752418 ~ 56752947 (+)
G1091217 NA other upstream 2782565 56725607 ~ 56726003 (+)
G1093909 NA other downstream 2185 59541558 ~ 59542603 (+)
G1094218 LOC100380853 other downstream 491630 60031003 ~ 60034020 (+)
G1095244 LOC108238713 other downstream 846291 60385664 ~ 60385973 (+)
LOC110539079 LOC106600700 other downstream 1157314 60696612 ~ 60777061 (+)
G1095209 NA other downstream 1277118 60816491 ~ 60818897 (+)

Expression


Co-expression Network