nme3 (nme3)


Basic Information

Item Value
gene id nme3
gene name nme3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 59755264 ~ 59760527 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021624344.2
GCACACTTCCTACCCGGTATTCCGCCGCTATACAACTTTGTATGCGTTATTTGTTGGCAAcctttttggaacagattcctcttggaacgttccacaaattatacaaACCAGGGTCAAATTGACATGTTTGGACTCCAGCCCTTGTCTccattgacagtgcatgttaatGTATGGCGGTATCTTATGAAGCTAGGAAGATGTTAGGTAACTTGGTGAAAGGTATCAGTAGCTTATTTCCTGAATCACTCCCCACACTGCGCGTTCGCGCCCTACTTCCTGGCTGCTTTCCGAAGATACGTTAAGGACTTTCTTCCTTATTTTAACTTTTTCACTGTAGATGATGCAACGATGATTTTCCTCTTAACTATATTGGCAAGTGTTTTCCAAACAGGTTGGACGGGTGTCAATGAGCACAGCTTCATAGCTGTGAAACCGGATGGTGTGCACCGGAGGCTAGTGGGAGAGATCATCCAGCGCTTTGAGAAAAAGGGCTTCAGATTGGTGGGAATGAAACTAGTCCAGGCGTCCGAGGATCTCCTGAGAGAGCACTACAGGGACCTGAGAGACAAACCCTTCTTCAATGGATTGGTGCGCAACATGAGCTCTGGACCCATCGTTGCCATGGTGTGGCAAGGTCTGGATGTGGTGAAGATGTCTCGCAAGATGCTGGGGGAGACCAACCCGGCAGACTCCCTACCAGGAACCATCAGAGGAGACTACTGTTTGGAAGTGGGCAGGAATGTGATCCATGGCAGTGACTCTGTGGAGAGCGCTCAGAGAGAGATCTCTCTGTGGTTCAGGCAGAATGAGCTACAGTGCTGGGAGGACAGCAGCGGACACTGGATCtatgagtgacacacacacaccacttgtaGACCACccaagtgccttcagaaactattcatacccctttactttttccacattttgtttttccaagcgggattaaaattgatttagtTGTCATTTTTTTGTGTCAACGGTCTACACAATACTTTGTCAAAGTGAAAGAAATTCTAACATATGTACAAATATTctt
>XM_021624342.2
AAcctttttggaacagattcctcttggaacgttccacaaattatacaaACCAGGGTCAAATTGACATGTTTGGACTCCAGCCCTTGTCTccattgacagtgcatgttaatGTATGGCGGTATCTTATGAAGCTAGGAAGATGTTAGGTAACTTGGTGAAAGGTATCAGTAGCTTATTTCCTGAATCACTCCCCACACTGCGCGTTCGCGCCCTACTTCCTGGCTGCTTTCCGAAGATACGTTAAGGACTTTCTTCCTTATTTTAACTTTTTCACTGTAGATGATGCAACGATGATTTTCCTCTTAACTATATTGGCAAGTGTTTTCCAAACAGATGATGCAACGATGATTTTCCTCTTAACTATATTGGCAAGTGTTTTCCAAACAGGTTGGACGGGTGTCAATGAGCACAGCTTCATAGCTGTGAAACCGGATGGTGTGCACCGGAGGCTAGTGGGAGAGATCATCCAGCGCTTTGAGAAAAAGGGCTTCAGATTGGTGGGAATGAAACTAGTCCAGGCGTCCGAGGATCTCCTGAGAGAGCACTACAGGGACCTGAGAGACAAACCCTTCTTCAATGGATTGGTGCGCAACATGAGCTCTGGACCCATCGTTGCCATGGTGTGGCAAGGTCTGGATGTGGTGAAGATGTCTCGCAAGATGCTGGGGGAGACCAACCCGGCAGACTCCCTACCAGGAACCATCAGAGGAGACTACTGTTTGGAAGTGGGCAGGAATGTGATCCATGGCAGTGACTCTGTGGAGAGCGCTCAGAGAGAGATCTCTCTGTGGTTCAGGCAGAATGAGCTACAGTGCTGGGAGGACAGCAGCGGACACTGGATCtatgagtgacacacacacaccacttgtaGACCACccaagtgccttcagaaactattcatacccctttactttttccacattttgtttttccaagcgggattaaaattgatttagtTGTCATTTTTTTGTGTCAACGGTCTACACAATACTTTGTCAAAGTGAAAGAAATTCTAACATATGTACAAATATTctt
>XM_021624341.2
gattcctcttggaacgttccacaaattatacaaACCAGGGTCAAATTGACATGTTTGGACTCCAGCCCTTGTctcaattgacagtgcatgttaatGTATGGCGGTATCTTATGAAGCTAGGAAGATGTTAGGTAACTTGGTGAAAGATGATGCAACGATGATTTTCCTCTTAACTATATTGGCAAGTGTTTTCCAAACAGGTTGGACGGGTGTCAATGAGCACAGCTTCATAGCTGTGAAACCGGATGGTGTGCACCGGAGGCTAGTGGGAGAGATCATCCAGCGCTTTGAGAAAAAGGGCTTCAGATTGGTGGGAATGAAACTAGTCCAGGCGTCCGAGGATCTCCTGAGAGAGCACTACAGGGACCTGAGAGACAAACCCTTCTTCAATGGATTGGTGCGCAACATGAGCTCTGGACCCATCGTTGCCATGGTGTGGCAAGGTCTGGATGTGGTGAAGATGTCTCGCAAGATGCTGGGGGAGACCAACCCGGCAGACTCCCTACCAGGAACCATCAGAGGAGACTACTGTTTGGAAGTGGGCAGGAATGTGATCCATGGCAGTGACTCTGTGGAGAGCGCTCAGAGAGAGATCTCTCTGTGGTTCAGGCAGAATGAGCTACAGTGCTGGGAGGACAGCAGCGGACACTGGATCtatgagtgacacacacacaccacttgtaGACCACccaagtgccttcagaaactattcatacccctttactttttccacattttgtttttccaagcgggattaaaattgatttagtTGTCATTTTTTTGTGTCAACGGTCTACACAATACTTTGTCAAAGTGAAAGAAATTCTAACATATGTACAAATATTctt
>XM_021624343.1
ACATGTTTGGACTCCAGCCCTTGTctcaattgacagtgcatgttaatGTATGGCGGTATCTTATGAAGCTAGGAAGATGTTAGGTAACTTGGTGAAAGGTATCAGTAGTTTATTTCCTGAATCACTCTCCACACTGCGCGTTCGCGCCCTACTTCCTGGCTGCTTTCCGAAGATACGTTAAGGACTTTCTTCCTTATTTTCACTTTTTCCCTGTAGATGATGCAACGATGATTTTCCTCTTAACTATATTGGCAAGTGTTTTCCAAACAGGTTCCGGTGACGCTAGCAATCTGATTGGTTGGTCGCACTCACACAAGAGCACCACGGCGCAAGCGAGTCTATGATATGGGACGAAGAAAACGGTCATTGCCTGTTCAGCAGGAAAAAAATGAGGATTTGGAGGCAAAACATGCACGAATTGAGGAATCTGATGGTTGGACGGGTGTCAATGAGCACAGCTTCATAGCTGTGAAACCGGATGGTGTGCACCGGAGGCTAGTGGGAGAGATCATCCAGCGCTTTGAGAAAAAGGGCTTCAGATTGGTGGGAATGAAACTAGTCCAGGCGTCCGAGGATCTCCTGAGAGAGCACTACAGGGACCTGAGAGACAAACCCTTCTTCAATGGATTGGTGCGCAACATGAGCTCTGGACCCATCGTTGCCATGGTGTGGCAAGGTCTGGATGTGGTGAAGATGTCTCGCAAGATGCTGGGGGAGACCAACCCGGCAGACTCCCTACCAGGAACCATCAGAGGAGACTACTGTTTGGAAGTGGGCAGGAATGTGATCCATGGCAGTGACTCTGTGGAGAGCGCTCAGAGAGAGATCTCTCTGTGGTTCAGGCAGAATGAGCTACAGTGCTGGGAGGACAGCAGCGGACACTGGATCtatgagtgacacacacacaccacttgtaGACCACccaagtgccttcagaaactattcatacccctttactttttccacattttgtttttccaagcgggattaaaattgatttagtTGTCATTTTTTTGTGTCAACGGTCTACACAATACTTTGTCAAAGTGAAAGAAATTCTAACATATGTACAAATATTctt

Function

symbol description
nme3 Predicted to enable nucleoside diphosphate kinase activity. Acts upstream of or within positive regulation of adenylate cyclase-activating G protein-coupled receptor signaling pathway. Is expressed in several structures, including brain; digestive system; male organism; pleuroperitoneal region; and tail bud. Orthologous to human NME3 (NME/NM23 nucleoside diphosphate kinase 3).

NR:

description
nucleoside diphosphate kinase 3 isoform X3

GO:

id name namespace
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:0006183 GTP biosynthetic process biological_process
GO:0006228 UTP biosynthetic process biological_process
GO:0006241 CTP biosynthetic process biological_process
GO:0005524 ATP binding molecular_function
GO:0004550 nucleoside diphosphate kinase activity molecular_function

KEGG:

id description
K00940 ndk, NME; nucleoside-diphosphate kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021624344.2 False 1039 mRNA 0.46 5 59755264 59760527
XM_021624342.2 False 1035 mRNA 0.46 6 59755322 59760527
XM_021624341.2 False 848 mRNA 0.46 6 59755779 59760527
XM_021624343.1 True 1081 mRNA 0.47 6 59755827 59760527

Neighbor

gene id symbol gene type direction distance location
mrps34 mrps34 coding upstream 4030 59741166 ~ 59751234 (+)
LOC110537883 LOC106600674 coding upstream 30008 59710093 ~ 59726547 (+)
LOC110537889 LOC106561172 coding upstream 46939 59705945 ~ 59708325 (+)
atp6v0ca vatl coding upstream 53108 59688669 ~ 59702156 (+)
LOC110537886 LOC106600678 coding upstream 81382 59672217 ~ 59673882 (+)
cramp1 cramp1 coding downstream 122526 59883053 ~ 59936477 (+)
parp14rs1 LOC106600688 coding downstream 220219 59980746 ~ 60009869 (+)
lin7b lin7b coding downstream 556705 60317232 ~ 60322740 (+)
ap2a1 LOC106600693 coding downstream 654516 60415043 ~ 60463695 (+)
si:ch211-195b15.8 LOC106600694 coding downstream 717918 60478445 ~ 60482021 (+)
G1094106 NA non-coding upstream 2040 59752962 ~ 59753224 (+)
G1094098 NA non-coding upstream 3488 59751404 ~ 59751776 (+)
G1094095 NA non-coding upstream 19867 59734942 ~ 59735397 (+)
G1094042 NA non-coding downstream 4290 59764817 ~ 59766890 (+)
G1094119 NA non-coding downstream 30415 59790942 ~ 59791240 (+)
G1094148 NA non-coding downstream 180600 59941127 ~ 59943329 (+)
G1094178 NA non-coding downstream 185302 59945829 ~ 59946071 (+)
G1094195 NA non-coding downstream 213978 59974505 ~ 59974758 (+)
G1093909 NA other upstream 212661 59541558 ~ 59542603 (+)
LOC118937686 NA other upstream 1533074 58216142 ~ 58222215 (+)
LOC110537841 mtmr4 other upstream 1840432 57893341 ~ 58071571 (+)
LOC110537831 dhx33 other upstream 2637337 57112902 ~ 57118165 (+)
G1091235 NA other upstream 3002317 56752418 ~ 56752947 (+)
G1094218 LOC100380853 other downstream 270476 60031003 ~ 60034020 (+)
G1095244 LOC108238713 other downstream 625137 60385664 ~ 60385973 (+)
LOC110539079 LOC106600700 other downstream 936160 60696612 ~ 60777061 (+)
G1095209 NA other downstream 1055964 60816491 ~ 60818897 (+)
mmp25a LOC106600705 other downstream 1194173 60931123 ~ 60965921 (+)

Expression


Co-expression Network