si:ch211-195b15.8 (LOC106600694)


Basic Information

Item Value
gene id si:ch211-195b15.8
gene name LOC106600694
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 60478445 ~ 60482021 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021624370.2
GACATCACATACAATTGTACTATTCTTAGCTTGTAGAAAACGCATTACCTCATCCTTTTCCTCTCGCGCAGGTATAGACATACAACAACAAATAATGTTACAGTCGCAGACAGGACGAGGACGGGATTAgaagtcgagagagagagagctgtactCTACTGATTATTAGTTAAGCATAACATATCCTTTTGGAATCTTCATCCATTTGCTTTGAGACCATTCGTTTGATTATATTATTTGGTGTGCAAGTTGATTTGTGCGATATTTCCAGTATCTTCGTTTGGATTGAAAATCGTCACTACACAAAGAACAGAGATGGTGttctacagggagagagagaacgggacacGCGAACGTCCACCGCTGTCTCTCATCCTACCGCATCTTTACCTAGGTGCAGAGACGGACGTCACGCAGGATTGCCTCGGCGCTCGCGGGATCTCCTACGTGCTAAGCGTGAGCCGCTGCAGCCCGCAGCCTACTTTCCTTCCCCGTTCCCAGTACCTTCGCATCCCCATCGACGACTCTCTCCGAGATGACCTGCTGCCCCATATCCCGGAGGCACTGCGTTTTATCGaTGGGGCTATGTCATCAGGTGGATCTGTGATAGTTCATTGTGCTGCAGGAATCTCTCGCTCCCCTGCCCTGGCTGTGGCCTACATTATGTACAACCTGGGGATGGACCTTGACCATGCCTAcagGTTTGTGAAAGAGCGCAGGCCTTCAATCTCCCCTAACTTCAATTTTCTGGGTCAGCTACAACACTTCCAGGGAACCCTCGCTCAGAAGGCCTCTAATGGCAACCCCACTATCCAGCCAATCAGATCACTGGACACATGTCTGCAGTCAAGCAATGAAAACATTAGCTGCGgttcctctgtccccctgtcagccaatcagatcaTGAATATTCAGGACAATGGCTATGTTGCTAAGGACTTTTTAGGGGTTGCTAAAGTGCATAATATGTACAATGAGATTTCCACTTGTAACACAGAGAACATAGAGCAAAGGTGCTCATATTCATGTGAAACTCAGAGTCTATCAGAGAAGCTACAGCAAGACCAGAGGAGTGTGCCTTCACAACTGACGCTGTCTCTCTCCAGCAAACTCAGAACGCTCACTCTCAACCTGAACCATAACCACAACCAGAACCAGAGGGAGGCCCAGAACTCGTGTGGAGCAATGACTCCAAGCCCCAACGAACCAGCGACACCAACACCAAAGCCCAACACACTACAAATCCCAACAGGCATTGCGTCTCTCTCTGAGAAGCGCAAGAGcctcaccctctccctgtctcccgttGGTGCAATTCTCCCAACCCCCCACCAGAATGAGCCACAAAGCAACAACAGGCAAAGCATTAGCCACAAGCCAACACGCTCCAGCGCTTCCAACACCATCCACAAGAGGGAGTCAGAAGGCACCAGTGGTTCAAAAAGGCACGGTAGAAAGCCTTCGGGGGTGGCCCTTTCCTCCTCACAGACAGAcgtacaacagagagagaggagcacatCCTGTGGCAAAGCAGCAGGTCGGCCCAATCACTGCTCCTCCCGAACCCAGGTGAAAGTAGAGAGAGCTGGAAGAGGCCAGGGTAAAAGAGAGCCCAGCCGCAGTCAGAGCGTGGAGAAGGGGAGGCCTAACTCAACTCCAAAGACAGGGAAGGACCACAGCAAGggaagagcagagagggagacgcTAACTGGGAGCCTGAGCAGCAGTTCTGTTTTGAATCAGCTCAGTATCATAGTTGACCAGCAGGTGTCACCAGCAGCTAAACTGTCTGCATCTGCAGTGGAGGCTGAGGAAGGAGTGGATGCTGAACAGGGCCTCCTGTCTCCTCTCAACCTGACTGTCAACAAGCTGCTGGGCTGGGGGGAGAAGATGCTGTTGGGGGTTCTGCTTGGCCCCCGGATCAAAGTGGGACAGGCTGTTCTGCCCTATAGGTGCTGATGCGGTAAGAGACCActggtgaggacagagagagggctgGTAAATGCCAGgagattgatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgcgcatgcatgtgAGGAACTGAAGAACATAACTGCATGTAAAATATTTGTCTGCCCATACCATGTTCACAGAGCTCTGAGTGAATGCTTTGTCCTATAAATACCAATTTATTGTTGACTTCCTTCAAAAGCactatatatattacatataggaGCAGTTTATGCCTCCAACACAATGCTCATGGATTTCGGCTTGATTATgttgatttttatttattgattGATGTGAATAAAGTGATCAGtttattgttgttatttataAAATGAATATTTTGAGGATGGTATTTTGGCACTGTTGTTTGTAATGGGATCATAGTGTTCATTAAAGTACATATTTTACTCA

Function

NR:

description
tyrosine-protein phosphatase vhp-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021624370.2 True 2402 mRNA 0.49 5 60478445 60482021

Neighbor

gene id symbol gene type direction distance location
ap2a1 LOC106600693 coding upstream 14750 60415043 ~ 60463695 (+)
lin7b lin7b coding upstream 155705 60317232 ~ 60322740 (+)
parp14rs1 LOC106600688 coding upstream 468576 59980746 ~ 60009869 (+)
cramp1 cramp1 coding upstream 541968 59883053 ~ 59936477 (+)
nme3 nme3 coding upstream 717918 59755264 ~ 59760527 (+)
LOC110537905 LOC106583918 coding downstream 869 60482890 ~ 60500493 (+)
prrg2 prrg2 coding downstream 19681 60501702 ~ 60511300 (+)
prr12b prr12 coding downstream 31226 60513247 ~ 60544029 (+)
scaf1 scaf1 coding downstream 94940 60576961 ~ 60596221 (+)
trpm4a LOC106600700 coding downstream 143574 60625595 ~ 60688115 (+)
G1095245 NA non-coding upstream 90739 60387455 ~ 60387706 (+)
G1095243 NA non-coding upstream 95010 60383146 ~ 60383435 (+)
G1095239 NA non-coding upstream 101257 60376967 ~ 60377188 (+)
G1095238 NA non-coding upstream 101655 60376431 ~ 60376790 (+)
G1095237 NA non-coding upstream 102592 60375633 ~ 60375853 (+)
G1095306 NA non-coding downstream 64766 60546787 ~ 60550460 (+)
G1095322 NA non-coding downstream 75028 60557049 ~ 60557273 (+)
G1095326 NA non-coding downstream 81428 60563449 ~ 60563648 (+)
G1095329 NA non-coding downstream 83996 60566017 ~ 60566245 (+)
G1095244 LOC108238713 other upstream 92472 60385664 ~ 60385973 (+)
G1094218 LOC100380853 other upstream 444425 60031003 ~ 60034020 (+)
G1093909 NA other upstream 935842 59541558 ~ 59542603 (+)
LOC118937686 NA other upstream 2256255 58216142 ~ 58222215 (+)
LOC110537841 mtmr4 other upstream 2563613 57893341 ~ 58071571 (+)
LOC110539079 LOC106600700 other downstream 214666 60696612 ~ 60777061 (+)
G1095209 NA other downstream 334470 60816491 ~ 60818897 (+)
mmp25a LOC106600705 other downstream 472679 60931123 ~ 60965921 (+)
G1095540 NA other downstream 555718 61037739 ~ 61352345 (+)
LOC118937701 LOC100136295 other downstream 1964483 62441706 ~ 62448515 (+)

Expression


Co-expression Network