LOC110537905 (LOC106583918)


Basic Information

Item Value
gene id LOC110537905
gene name LOC106583918
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 60482890 ~ 60500493 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021624371.2
TCGAGAAACCCTTCTTGGTTGAGAAAAAAAAGTTGCCTTGGAGCGATGAAAAAATAAGTCAGTGAAGACGAGGAACAAATGAAGACGTCGCCAAGAATAACCCAGTAACTTAGATATCACAAAAGCTGTTATATAATGCTCCTGCAGAGATATGTAGATTAATCAATCTAGAGATAATGAAAGTTAGACACGCGTGTTAAAGTTTGACGGGGTAGTTGATAATCAAGctcatattttttttcttcttctggagTCAAAGTTGGCATCGATAGCCTAATTTACTTGAGGCGGGTGCGGAAGGCTTTTCACCCGACAAAAATTATAAGAGTCCGATAAACCATTAGATTTTTTAACAATAAtactttatttatattttaccGGGTTATGTAGCGACCTATACATTTTAGGAGCAGTGGTACGAAACTCTATTGGGGTTAGACTACTTTTGAGGATAGTTTACAACACTGGGCCAGACTACAACCGTAAGCTTTTCAATGTTATGAAATAGTATCAGAAAACTAactatacatttttacatttgagatATTGTAAACCTATCGTAGGTAATTCAAGTTAAATATATTGGCGTAACACCGAGGTAAAACCAAACTCTGCTTCCTTCTCGGACTTTTCCTTGAGCTACTTTGATAAAAGTAGTTTGCTCAATCGTTGAAGTGGACtttcatttttttccccccctgtGTATTACAAAATTTCACGTCATAAATAGATCCTATCAGCTACTCAGTTTTATCATTTCGTTTTTCAAAAGATAGACAACCGTTGAAAGTATTTTACGAAACTAATCATGTCTGCTGAGGAGGAGAGATTCAAACTGGTCGTCGTGGGCGGGGGCGGTGTGGGGAAAAGCGCCTTGACCATACAGTTCATTCAGTCATACTTTGTATCGGATTATGACCCCACCATCGAGGACTCCTACACCAAAATATGCACAGTGGATGGGAAAGAGACACGATTAGACAtattGGACACAGCAGGTCAGGAGGAGTTTGGGGCAATGCGGGAGCAGTACATGCGTTCAGGGGAAGGCTTCTTGCTGGTGTTCGCTCTGAATGACACTGGCAGTTACAATGAGATCCACAAGTTCCACACCCAGATACTGAGAGTGAAGGACCGGGATGACTTCCCCATGGTGCTGGTGGGGAACAAGGCTGACCTGGACCAGTCGAGAGCGATCTCCAGAGAGGAGGCCCAGGGCTTTGCCAGAGAGAACAGGATCCATTACATGGAGGCCTCGGCTAAGAACCGCTACAACGTAGATGAAGCCTTCCTGGAGGTGGTGCGAGCTATAAGAAAGTTTCAGGAGACTGAGAGTCCCCCTCTACCTGCAAACCACACAGGAAAACGGAAGAGCGGTGGCTGCCCCTGCACCCTCCTTTAACTGCCCCCTTCCATGGCATAGCGCTGTTGTCACAGAGACCAAAACCCCCTCACCTCACCACTGATACAAGTCTTGTCTGACTTACCTGGAGGGAAATGGGAGGATTTGgcaagggaggggagagatataCACTTGGAAATGCAAAAACTGTATGGTGAGGTTTGGGGAATTGGGCAGGGATGCTTACGGCAATGGTGGGCAAAGTGGTGGAGTGATGTGTTTTCATTCACACTTATAAATTAGCGTCTTCAAACTTtttttatatacttttttttgtatttgtggTATTATTTCATTGTGCAAGGATGTAAAGGGAGAGGCCTTGGGCTAGatgagaagagagcgagagatgaatCTACAGACTGAAGAAAGAAAGAGTAGGGATGGTAAAGAGTGAGATCTCACAGATACTGTGTTTTGGGTAGCTTCCTACATTGGGTCAACCTGATGGAAGTCACTGATTTGACATTGCTGGAAGGAATGGATAATTTAGGAACTAGAGGGCGCTATCATTCATACCTACAACAGAAAATGAAAGAAGCCCGGTTAAACTGAATCGACAAATTAGATTTTTAAAAGACTGCATGGAAAAGAGGGAGAGCTGAAGCAGAATGAGAGTGAAACGATGTGTTTGAAAGACTGGTACTTTTCACAGTGTGGTATCCATGACCACAGAATATATCATATTTTTTTGCACAACTTCAACGTAGGCAAAAGTAGTTTGACACTAAAGTGCTATTGTTTATTTTAAAATGACTGGGTGGATGTTTAGGCATGTCCAGGTACTTTTGTCTATGCATTCAGGTGTAGACCTGCTTTTTAAGTCATTTTTATTGTTATGCTCTTTGCAAATGTTTAAATGTCACATCGCTACCAACCATGTACATCAATGAGTTCGTTTTTGAATGGTATTAAATGAATGAGTTAAAGCTTCAGACAAGGCATCAACTGTCGACAACTGTTGATGAAAAACAGAAAGTGACAGAACATGGGTAAGTTGACATATAAATACATCCCAAGATTTACGCCCATTGGTTGAGAGAGATGATGGTGATAATTGCAAGAGTGAGCCCATAGGCTGAACAGCAAGCATGTGGAATGGGCATTACTGTGCGGTGCTGATAGGCTATACGGTAAATGGTTGAATTACATTCCGGACGTGGCTAATAGGAAAGAGATGACGCTATGCTGACGATAATACGTTCGTATTCATTCCCACTATGTCCATATAATAGGAAGCTAAGTAAGTTATGTTTTGCTTACTTGAAGTTACCCGAACAGTCAGACCAGCCTTCCTGATTTAACTTCTGTAAACTGCATGTGTCTGTCATGAAATAACTTGTTTGTTTAGAGAGGATATGTAGCACTGGTCTTGCAAACCTTCATATAGATGTAATTAACATACGACTATCCCTTGTGCGATATTTCACACAAAGCAGGATAGCCATCTAACGTTCTGAAATATTCTGAATCTGCTCCAAATTTGTGAGTTGAATCGGACTCAACTCTGACCCTAAAAATATTTGAGCTGTTTTGATTAATAATTTGAGTTATTGATGATTGGTTCTCAAAGCTGACCATCTTATTTTCTTTGTGAACGAGAACCGTGTTGATGTTGGATCCACATTTGTCCCACGTTGTTCTTTACCTAATTATAAAATAATGCATTGACTCAGTGCTATTAATGCAGTGTAATAAACCACAAAAAAGTATTGTACTTAAATCTGTTATGTAGTTATTTTTAACAGCAGAAAGCCGTTTGTATTCTTATACCAATGAATCTCAAACTATATCAAACTTGCACCCTGTAATCCATCGGTATCTGCCATGTGTATTTTGTACTGAAATAAACCAAATACCTTTTGTACACgtcacaatttaaaaaaacattattaCTCTAATCAAGTCTGGACACAACTTATTTTTCTACTTTACTATTTCTCATCAACAGTATTGGTGAACGCTTGGTGACAGGAAAGTAGCGAGGGGAAAGCAATGAGAAAAAGGAGCATGTAAATGTACAGATCAATAAAAAGGACTGTTTGAATTGGGATGTTCATGCTCAAAAATATGATGTATGTTAGCCTGTGGGGTTCATGGGTTTGAATCCAGCCCATTGCCCTTTGATTCGccctccatcttccctgtcttTCCAACATTGTTCTATGCTTAAATAAAAGCTAAACAAATATA

Function

NR:

description
ras-related protein R-Ras-like

GO:

id name namespace
GO:0007219 Notch signaling pathway biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0045199 maintenance of epithelial cell apical/basal polarity biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07829 RRAS; Ras-related protein R-Ras

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021624371.2 True 3595 mRNA 0.40 6 60482890 60500493

Neighbor

gene id symbol gene type direction distance location
si:ch211-195b15.8 LOC106600694 coding upstream 869 60478445 ~ 60482021 (+)
ap2a1 LOC106600693 coding upstream 19195 60415043 ~ 60463695 (+)
lin7b lin7b coding upstream 160150 60317232 ~ 60322740 (+)
parp14rs1 LOC106600688 coding upstream 473021 59980746 ~ 60009869 (+)
cramp1 cramp1 coding upstream 546413 59883053 ~ 59936477 (+)
prrg2 prrg2 coding downstream 1209 60501702 ~ 60511300 (+)
prr12b prr12 coding downstream 12754 60513247 ~ 60544029 (+)
scaf1 scaf1 coding downstream 76468 60576961 ~ 60596221 (+)
trpm4a LOC106600700 coding downstream 125102 60625595 ~ 60688115 (+)
LOC110539079 LOC106600700 coding downstream 196119 60696612 ~ 60777061 (+)
G1095245 NA non-coding upstream 95184 60387455 ~ 60387706 (+)
G1095243 NA non-coding upstream 99455 60383146 ~ 60383435 (+)
G1095239 NA non-coding upstream 105702 60376967 ~ 60377188 (+)
G1095238 NA non-coding upstream 106100 60376431 ~ 60376790 (+)
G1095237 NA non-coding upstream 107037 60375633 ~ 60375853 (+)
G1095306 NA non-coding downstream 46294 60546787 ~ 60550460 (+)
G1095322 NA non-coding downstream 56556 60557049 ~ 60557273 (+)
G1095326 NA non-coding downstream 62956 60563449 ~ 60563648 (+)
G1095329 NA non-coding downstream 65524 60566017 ~ 60566245 (+)
G1095244 LOC108238713 other upstream 96917 60385664 ~ 60385973 (+)
G1094218 LOC100380853 other upstream 448870 60031003 ~ 60034020 (+)
G1093909 NA other upstream 940287 59541558 ~ 59542603 (+)
LOC118937686 NA other upstream 2260700 58216142 ~ 58222215 (+)
LOC110537841 mtmr4 other upstream 2568058 57893341 ~ 58071571 (+)
G1095209 NA other downstream 315998 60816491 ~ 60818897 (+)
mmp25a LOC106600705 other downstream 454207 60931123 ~ 60965921 (+)
G1095540 NA other downstream 537246 61037739 ~ 61352345 (+)
LOC118937701 LOC100136295 other downstream 1946011 62441706 ~ 62448515 (+)

Expression


Co-expression Network