XLOC_002923


Basic Information

Item Value
gene id XLOC_002923
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 35650584 ~ 35654680 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005407
ggagggaaagttgtagtttttttacccagacatttaaaaagaaaatattttagaacagtaatcacaatactgtgaaatcgtgatatttttatccaagattatcataccatcagaatcttataccagcccatgcctaattcCAGGTCTCctgaaaatgataataatttagaGATAATGTGTTCTAGTCATTGCTTTTAATGCATGATAGTCAGTGGTGTTTAtcatttctaaaatgtttttgctTCTTTTGCTGCTTAAATAGCCGACATTGTctgttttgtaattaattattcttagagatgttgtgtgtgtatgtgtgttcatcTCTGAATGATGCCCTAAGCCCTAAACAGTAAGAGTTTATGTGCTGAGGTTAAAAATTCAGCACATTGTCTCTTACTTGTAGGGAAAAGGGTTTCTATCGGCCTGTCACATTGTTTTCGCTTTGTTGTGGAAGATAGTCAACATGTGCATTGCAGAAAAACAAGCAATGTCATCAGTGTACAAATCTCAAGAATATTCAGCAAATGTTAAGAGTAAGCTTGAAATATCTTCGGACTTTATACCCAGGCTTTTGAATTAGACATTAAAATTGATGTGGAATTAGCATTGTTTGGATGTTCAGACCAGGCTTTAACTTAACATCAACAACTCTCCCTTATGTTTGGCATGGTGCTGTCCAAGAGAGTGATTCTAATGGAGTGGAAATCCATGACACCTTCAAGTAGCCCTAAAGCTTGGAAGCTTACATTTCTCTAGATTTGGCAAACAGAAGATGTATGGCAAAATATGGAGTCCTTTCCTTGGATATATATTATAATGTAGCTGtaactattattttttaatatatttttcttcttttcacATGTCATTTTCTTTTGTAACGGATTCCATTAGTCTGGAAACTGTATGGGGAAAAGGAGCAATCGCTGGCTCTCCGTATGAAGAATATGAATCACTGGGTCATCGGGGAACATATTGAATCATCAGGAAAACATTAGAAAGCACTGGTACGCTACATGAATTCATGACACAAGAAAGCAAGTCTGCATGTGTTGACTTAAGCTGTGATAAGAATAAAGTTAATTAATGATAATACATTAGAGTCATTGCATAAAATGAATCCCGTTTTTACTTGAGAAATAAACCAACATAAAAGTGCTGTAACTAGGCTATAATAAATGTGTGATTTCAAAACATTACATTATTGTTTTAtcaatgttgttttaaattagAGTCGATTAAATGTTATTTGAATCTTCGCATTCCTTTCCTTTTTACTTTTTTAGCTGAACTTTTAATTTGCAAGTTGAAGGCGGAATGATACAACAATTATAATAACATGTTGTTCGAACTCAGAAATAAACATTTAGGCAATGTTTTTGGCACAAGtgcctttttttaataaaatgtaaatgattttacCTGCTGTTACCCTcataaaaacacacttttttataataaactattatttagaaaagaagaaatgtacaatataaatcAGGAAGTAATCTTTAGAAGACTGGAATACAAGAATATACAATtacaaaatgataaaaacaataagtaacaaaaaaaagaagtaatagaaagaaaaaagaacaaaataaagaaaggggaagtacaaaattaaattaaataaaaaaaatacagaaatcatTAATTACTAACATACTGGAAGCATGATATTTTCATAAGTTTCTATTAACTTGCAGAATTTTTTGTTGCTAGATAGACGTATAGCTTTAAGCAAGGAAtcaattttagtttaaaaaatggGCACATGAGGGAGAGGGTTTAAGAAATTTTTGTTTGTGGATAAAGAATTTTgcatataatattaaaaacatttatttttatacttaattTTTACTCTTGGGACtagaataataacaaataatatctttACCCTCACAAAAACCCCATGTAAAACAGCCGTAAAAGTGACATCCCTTTTGTGCAGTTACATCATCACTCAACTACAAATAACACAAGTGCGTCACTATCTTCTAAATATCGTTGTTGATGTTGATTTAGGAGGTTGGACATAATGCTATCATTTTTAAATTACAACTAccgtacagttaaagtcagtattattagcccccct
>TCONS_00005408
CTGAATGATGCCCTAAGCCCTAAACAGTAAGAGTTTATGTGCTGAGGTTAAAAATTCAGCACATTGTCTCTTACTTGTAGGGAAAAGGGTTTCTATCGGCCTGTCACATT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000085822

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005407 False 2110 lncRNA 0.31 2 35650584 35654680
TCONS_00005408 True 110 miRNA 0.41 1 35654245 35654354

Neighbor

gene id symbol gene type direction distance location
XLOC_002922 BX663516.3 coding downstream 30135 35620333 ~ 35620449 (-)
XLOC_002921 smg6 coding downstream 36832 35584647 ~ 35613752 (-)
XLOC_002920 si:ch211-244c8.4 coding downstream 108513 35537974 ~ 35542071 (-)
XLOC_002919 NA coding downstream 218929 35429504 ~ 35431655 (-)
XLOC_002918 gabrr3a coding downstream 240066 35367722 ~ 35410518 (-)
XLOC_002924 ovca2 coding upstream 9449 35664129 ~ 35668584 (-)
XLOC_002925 NA coding upstream 157072 35811752 ~ 36093533 (-)
XLOC_002926 BX088524.4 coding upstream 508499 36163179 ~ 36163294 (-)
XLOC_002927 or109-13 coding upstream 550531 36205211 ~ 36207737 (-)
XLOC_002928 or109-11 coding upstream 557895 36212575 ~ 36214582 (-)
XLOC_002917 NA non-coding downstream 328947 35312892 ~ 35321637 (-)
XLOC_002912 BX465844.1 non-coding downstream 486293 35160010 ~ 35164291 (-)
XLOC_002909 NA non-coding downstream 592140 35054281 ~ 35058444 (-)
XLOC_002939 NA non-coding upstream 810663 36465343 ~ 36469895 (-)
XLOC_002942 NA non-coding upstream 940700 36595380 ~ 36610901 (-)
XLOC_002944 NA non-coding upstream 987486 36642166 ~ 36650904 (-)

Expression


Co-expression Network