Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110538925 |
| gene name | cln3 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048576.1 |
| NCBI id | CM023230.2 |
| chromosome length | 102853256 |
| location | 61258812 ~ 61285193 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| cln3 | Acts upstream of or within axonogenesis; lysosome organization; and negative regulation of neuron apoptotic process. Predicted to be located in lysosomal membrane. Predicted to be integral component of membrane. Predicted to be active in lysosome. Is expressed in brain; central nervous system; cerebellum; and midbrain hindbrain boundary. Used to study neuronal ceroid lipofuscinosis 3. Human ortholog(s) of this gene implicated in neuronal ceroid lipofuscinosis 3. Orthologous to human CLN3 (CLN3 lysosomal/endosomal transmembrane protein, battenin). |
| description |
|---|
| unnamed protein product, partial |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| LOC110538925 | False | 1619 | mRNA | 0.47 | 14 | 61258812 | 61285193 |
| TU1245908 | False | 354 | lncRNA | 0.47 | 2 | 61273890 | 61274392 |
| TU1245971 | True | 327 | lncRNA | 0.47 | 2 | 61284451 | 61284944 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118936506 | NA | coding | upstream | 48331 | 61200915 ~ 61210481 (+) |
| LOC118936507 | cln3 | coding | upstream | 77036 | 61178894 ~ 61181776 (+) |
| LOC118937695 | NA | coding | upstream | 94714 | 61163833 ~ 61164098 (+) |
| LOC110539103 | NA | coding | upstream | 132609 | 61116698 ~ 61126203 (+) |
| LOC118937693 | NA | coding | upstream | 161193 | 61095791 ~ 61097619 (+) |
| LOC110539102 | NA | coding | downstream | 31862 | 61317055 ~ 61325155 (+) |
| LOC110539107 | LOC106600721 | coding | downstream | 239505 | 61524698 ~ 61530938 (+) |
| LOC110539080 | LOC106600701 | coding | downstream | 302370 | 61587563 ~ 61596487 (+) |
| nudt9 | nudt9 | coding | downstream | 389534 | 61674727 ~ 61682763 (+) |
| LOC110537909 | ehd3 | coding | downstream | 397774 | 61682967 ~ 61699122 (+) |
| G1095574 | NA | non-coding | upstream | 68676 | 61189756 ~ 61190136 (+) |
| G1095540 | NA | non-coding | upstream | 217031 | 61037739 ~ 61352345 (+) |
| G1095506 | NA | non-coding | upstream | 267774 | 60990649 ~ 60991038 (+) |
| G1095509 | NA | non-coding | upstream | 284967 | 60973299 ~ 60973845 (+) |
| G1095617 | NA | non-coding | downstream | 72824 | 61358017 ~ 61358849 (+) |
| G1095615 | aldoa | non-coding | downstream | 74343 | 61359536 ~ 61363938 (+) |
| G1095653 | NA | non-coding | downstream | 95032 | 61380225 ~ 61380439 (+) |
| G1095657 | NA | non-coding | downstream | 104868 | 61390061 ~ 61390342 (+) |
| G1095665 | NA | non-coding | downstream | 118428 | 61403621 ~ 61444941 (+) |
| mmp25a | LOC106600705 | other | upstream | 293217 | 60931123 ~ 60965921 (+) |
| G1095209 | NA | other | upstream | 439915 | 60816491 ~ 60818897 (+) |
| LOC110539079 | LOC106600700 | other | upstream | 544800 | 60696612 ~ 60777061 (+) |
| G1095244 | LOC108238713 | other | upstream | 872839 | 60385664 ~ 60385973 (+) |
| G1094218 | LOC100380853 | other | upstream | 1224792 | 60031003 ~ 60034020 (+) |
| LOC118937701 | LOC100136295 | other | downstream | 1161311 | 62441706 ~ 62448515 (+) |
| LOC100305204 | hebp2 | other | downstream | 2017298 | 63302491 ~ 63334694 (+) |
| LOC110538933 | LOC106600901 | other | downstream | 2602903 | 63888086 ~ 63908673 (+) |
| G1097063 | NA | other | downstream | 2851165 | 64136358 ~ 64136704 (+) |
| G1097116 | NA | other | downstream | 2942808 | 64228001 ~ 64228684 (+) |
