si:dkey-16l2.16 (LOC106600727)


Basic Information

Item Value
gene id si:dkey-16l2.16
gene name LOC106600727
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 61544105 ~ 61549800 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021626081.2
GATTTGGATGAAAGTAACTCAACAACACTCAGGTGTGGCCTGAAGACGTCGGGCCGTGGACCAGTCTAAGGCTCCGAACTTTCCTGAGTCATCCTCCCCCGGAACCAAGACGTCTGGAACGGTCAACAGATCCTAGCGTTTCTTCTTCGGACTGACCAATTGCACAAGTCATCGTTTTGGTGATCGCAATTGATCATTTTGTAGCACGACGCGTTTGAAATACGCATAGAAACTTAGCTACGCTAGAGGAATTATTCCTATACCGTTATCTAGCCGAGTTGTGTTTTGCGTTTATCAAATTTCCACGAGAAAGTAACTTTTAACTTCGTCTGTGGGCGAGTGGCTTGCTCATGGCAATCCCCAAAGATCCCGGATATAAACGAATCTAGCCTCTGCTCAGACAGTCACTGCTGATCCTAGCTGCTGATAATGCCCTCTGGTTGCATGGGTATGGTCCAAAGAAGGGAGCTGAGGAAAGCCTGAAACAAACCAAATACTGTGAAGGCGCCCACCATTTCTCCGCCCATAGCTCAGAGAGGAAGTGAAACCAAGGGATTGAGACCGAAGCAGTTCAATGGATGAAAACGTTGCATGGACTGTAGATTGAAAGAGGAAGAACTTCATCCTCTCAGATTTTTGCTTTTGGTCTCTGCTTGTACAACCTTTCAGGCCCCTCTGCCTGTTATTTTGTTTCTTGTAAGATGTGTGTGATAACTTGACGCAGAGATGACAGTGAGACTGTGGGATAAGCAAAAGTGGTAACTGAGAAGAGCAGTGACGTGAATCCTTACATCCGTATGCTACCCACTGGAATATCTAAGTATTAGCTAATCAAGCAACAACAATCCGTCTACCTTGGACACAGACTAACAACTGAGCACTTTCAGACGCTCATGGATGTAGTGACTGACTGCCAGAACGCAATTTGACGAGGATAGTCTCTTTGCTCATGTGTAGAGTTTAACGTGCCAGAAGTCCTTCACCGTCTGTCACTGCAGCCCAACTTTAAGGGGGACACTTTATGATGGAAAGAGAACTTAGGTAAACCTGTGATGAGTCGGAATGTGGTGCTGCAAATAACTGGGAATCCCCTACTGGAGTTAGTGGGAGGAACTGGAACTGAAGTGGAACCAGAACCAACCGAGGCCTAAGCACGACAACTGAATGCCATGTACTAAACTGGAAATACGCTTGATTTAACTGCGTTGGGGGGGAGACTGTTTCATCCTGGGATTTGGGAAGACTGGAATCTGTTCCTGTGGAACTGCATTTATTGGGAGAGGATTACTGAAACCAACAGAGCACTGACTGCAGAAATGGCGGGGCCGGGAAAGGACTACAACCATCTCTTCAAACTGCTCATCATTGGAGACTCCAATGTAGGGAAGAGCAGTCTACTACTACGATTTGCAGATAACTCCTTCTCTGGTAGCTACATCACTACGATCGGCGTGGACTTTAAGATCCGTACAGTGGACATCGACGGGGAGCGAGTCAAACTGCAGATCTGGGACACGGCGGGCCAGGAGCGCTTCAGGACCATCACCTCAACGTATTATAGAAATACCCACGGTGTGATTATTGTTTACGATGTCACCAATCCAGAGTCGTTTGTGAACGTGAAGAGGTGGCTTAATGAGATCACTCAGAACTGTGACAACGTCTGTAAGATCCTAGtgGGGAACAAGAATGACGACCCCTCCAAGAAGCAGGTGGACTCCCAGGATGCAATGCGTTTCGGGGAGTCGGTTGGTGTCCGGGTATTTGAGACGAGCGCCAAAGAAAACATCAACGTGGAAGAGaTGTTTATGGCTTTCACTCACATGGTCCTTCGGACAAAGAAGCAGAGTCAGAGTCgtgcagagagagagcgggaacgAGAGAAGGAAACGGTCGACATCAATTCTCACAGACaccgagagaggaggaagagggggaagaagtgttgctgagggagagaaaggaaggcgATTTTCTAAGAAAAGGACAGACCAATGGAGAGTCGAGCATCCAAAGTCTGTCTGCACTCATGGGGAAAGAGCCAGGACATTACATGTTGACATTGCACTGAGGCAAGATTACAAGAGGGTAAGGACAGAGAACCACTATTATGTGCCGAATTTTTACCTTAGCAGTTATTTTTTATGAATGCATAATAATGTCATTTTATCATTAAAAGGGAAACTGGATCCCCACTGTGTCAAACTGTCATTAAAACCCCTAATTTAGGAAATACACTAATGACTTCAAAAGTGACTAGAGTGATGTATCTGTCTTATTTGTAATGAAAAAGACTGTCGTGAAAAATGTAACATGTCTAAATAAACAGTGAGCAATAAAGTCAA
>XM_036937969.1
TGATTTGGATGAAAGTAACTCAACAACACTCAGGTGTGGCCTGAAGACGTCGGGCCGTGGACCAGTCTAAGGCTCCGAACTTTCCTGAGTCATCCTCCCCCGGAACCAAGACGTCTGGAACGGTCAACAGATCCTAGCGTTTCTTCTTCGGACTGACCAATTGCACAAGTCATCGTTTTGGTGATCGCAATTGATCATTTTGTAGCACGACGCGTTTGAAATACGCATAGAAACTTAGCTACGCTAGAGGAATTATTCCTATACCGTTATCTAGCCGAGTTGTGTTTTGCGTTTATCAAATTTCCACGAGAAAGTAACTTTTAACTTCGTCTGTGGGCGAGTGGCTTGCTCATGGCAATCCCCAAAGATCCCGGATATAAACGAATCTAGCCTCTGCTCAGACAGTCACTGCTGATCCTAGCTGCTGATAATGCCCTCTGGTTGCATGGGTATGGTCCAAAGAAGGGAGCTGAGGAAAGCCTGAAACAAACCAAATACTGTGAAGGCGCCCACCATTTCTCCGCCCATAGCTCAGAGAGGAAGTGAAACCAAGGGATTGAGACCGAAGCAGTTCAATGGATGAAAACGTTGCATGGACTGTAGATTGAAAGAGGAAGAACTTCATCCTCTCAGATTTTTGCTTTTGGTCTCTGCTTGTACAACCTTTCAGGCCCCTCTGCCTGTTATTTTGTTTCTTGTAAGATGTGTGTGATAACTTGACGCAGAGATGACAGTGAGACTGTGGGATAAGCAAAAGTGGTAACTGAGAAGAGCAGTGACGTGAATCCTTACATCCGTATGCTACCCACTGGAATATCTAAGTATTAGCTAATCAAGCAACAACAATCCGTCTACCTTGGACACAGACTAACAACTGAGCACTTTCAGACGCTCATGGATGTAGTGACTGACTGCCAGAACGCAATTTGACGAGGATAGTCTCTTTGCTCATGTGTAGAGTTTAACGTGCCAGAAGTCCTTCACCGTCTGTCACTGCAGCCCAACTTTAAGGGGGACACTTTATGATGGAAAGAGAACTTAGGTAAACCTGTGATGAGTCGGAATGTGGTGCTGCAAATAACTGGGAATCCCCTACTGGAGTTAGTGGGAGGAACTGGAACTGAAGTGGAACCAGAACCAACCGAGGCCTAAGCACGACAACTGAATGCCATGTACTAAACTGGAAATACGCTTGATTTAACTGGTAATTATTGCACTTGCGAGCGTTGGGGGGGAGACTGTTTCATCCTGGGATTTGGGAAGACTGGAATCTGTTCCTGTGGAACTGCATTTATTGGGAGAGGATTACTGAAACCAACAGAGCACTGACTGCAGAAATGGCGGGGCCGGGAAAGGACTACAACCATCTCTTCAAACTGCTCATCATTGGAGACTCCAATGTAGGGAAGAGCAGTCTACTACTACGATTTGCAGATAACTCCTTCTCTGGTAGCTACATCACTACGATCGGCGTGGACTTTAAGATCCGTACAGTGGACATCGACGGGGAGCGAGTCAAACTGCAGATCTGGGACACGGCGGGCCAGGAGCGCTTCAGGACCATCACCTCAACGTATTATAGAAATACCCACGGTGTGATTATTGTTTACGATGTCACCAATCCAGAGTCGTTTGTGAACGTGAAGAGGTGGCTTAATGAGATCACTCAGAACTGTGACAACGTCTGTAAGATCCTAGtgGGGAACAAGAATGACGACCCCTCCAAGAAGCAGGTGGACTCCCAGGATGCAATGCGTTTCGGGGAGTCGGTTGGTGTCCGGGTATTTGAGACGAGCGCCAAAGAAAACATCAACGTGGAAGAGaTGTTTATGGCTTTCACTCACATGGTCCTTCGGACAAAGAAGCAGAGTCAGAGTCgtgcagagagagagcgggaacgAGAGAAGGAAACGGTCGACATCAATTCTCACAGACaccgagagaggaggaagagggggaagaagtgttgctgagggagagaaaggaaggcgATTTTCTAAGAAAAGGACAGACCAATGGAGAGTCGAGCATCCAAAGTCTGTCTGCACTCATGGGGAAAGAGCCAGGACATTACATGTTGACATTGCACTGAGGCAAGATTACAAGAGGGTAAGGACAGAGAACCACTATTATGTGCCGAATTTTTACCTTAGCAGTTATTTTTTATGAATGCATAATAATGTCATTTTATCATTAAAAGGGAAACTGGATCCCCACTGTGTCAAACTGTCATTAAAACCCCTAATTTAGGAAATACACTAATGACTTCAAAAGTGACTAGAGTGATGTATCTGTCTTATTTGTAATGAAAAAGACTGTCGTGAAAAATGTAACATGTCTAAATAAACAGTGAGCAATAAAGTCAA

Function

NR:

description
PREDICTED: ras-related protein Rab-35-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021626081.2 False 2345 mRNA 0.46 8 61544105 61549799
XM_036937969.1 True 2366 mRNA 0.46 8 61544105 61549800
Loading

Neighbor

gene id symbol gene type direction distance location
rnf25 LOC106600708 coding downstream 6598 61530957 ~ 61537507 (-)
kat8 LOC106600709 coding downstream 22997 61509302 ~ 61521108 (-)
fus fus coding downstream 49336 61473386 ~ 61494769 (-)
LOC110539082 LOC106600703 coding downstream 85602 61445023 ~ 61458503 (-)
LOC118937696 NA coding downstream 120756 61420775 ~ 61423349 (-)
thoc6 LOC106600718 coding upstream 308 61550108 ~ 61555670 (-)
srrm2 LOC106600666 coding upstream 9672 61559472 ~ 61572862 (-)
ypel3 LOC103040367 coding upstream 54644 61602944 ~ 61613176 (-)
LOC110539097 LOC106600720 coding upstream 67735 61617535 ~ 61638811 (-)
LOC110539092 LOC106600714 coding upstream 89830 61639630 ~ 61656609 (-)
G1097829 NA non-coding downstream 14084 61529626 ~ 61530021 (-)
G1097826 NA non-coding downstream 17118 61526688 ~ 61526987 (-)
G1097771 NA non-coding downstream 35114 61505256 ~ 61508991 (-)
G1097816 NA non-coding downstream 40447 61503264 ~ 61503658 (-)
G1097815 NA non-coding downstream 42074 61501786 ~ 61502031 (-)
G1097834 NA non-coding upstream 7001 61556801 ~ 61557008 (-)
G1097835 NA non-coding upstream 7666 61557466 ~ 61557827 (-)
G1097836 NA non-coding upstream 8060 61557860 ~ 61558092 (-)
G1097837 NA non-coding upstream 8387 61558187 ~ 61558496 (-)
G1097844 NA non-coding upstream 30311 61580111 ~ 61580339 (-)
G1097817 NA other downstream 39271 61503960 ~ 61504834 (-)
G1097645 NA other downstream 219393 61038716 ~ 61324712 (-)
LOC110539101 NA other downstream 299778 61144112 ~ 61244327 (-)
snrnp70 LOC106583923 other downstream 1194752 60336697 ~ 60349405 (-)
natd1 natd1 other downstream 1572598 59968254 ~ 59971543 (-)
G1097852 LOC106600701 other upstream 41438 61591238 ~ 61593463 (-)
G1097953 sh2b1 other upstream 253910 61803710 ~ 61808501 (-)
G1098154 LOC106600756 other upstream 632950 62182750 ~ 62185946 (-)
G1098256 LOC106600954 other upstream 939367 62380280 ~ 62490254 (-)

Expression

si:dkey-16l2.16(LOC106600727) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 60.
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si:dkey-16l2.16(LOC106600727) Expression in each Bioproject

Bar chart with 21 bars.
si:dkey-16l2.16(LOC106600727) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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Co-expression Network