Gene
RNA
| Item | Value |
|---|---|
| gene id | atxn2l |
| gene name | atxn2l |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048576.1 |
| NCBI id | CM023230.2 |
| chromosome length | 102853256 |
| location | 61813631 ~ 61833601 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| atxn2l | Predicted to enable RNA binding activity. Predicted to be involved in stress granule assembly. Predicted to be active in cytoplasmic stress granule. Orthologous to human ATXN2L (ataxin 2 like). |
| description |
|---|
| ataxin-2-like protein |
| id | description |
|---|---|
| K23625 | ATXN2_2L; ataxin 2/2L |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021624381.2 | False | 3809 | mRNA | 0.58 | 24 | 61813631 | 61833601 |
| XM_036937981.1 | False | 3702 | mRNA | 0.58 | 23 | 61813631 | 61833601 |
| XM_036937980.1 | True | 3527 | mRNA | 0.59 | 23 | 61814609 | 61833601 |
61,792,000
61,796,000
61,800,000
61,804,000
61,808,000
61,812,000
61,816,000
61,820,000
61,824,000
61,828,000
61,832,000
61,836,000
NC_048576.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| sh2b1 | sh2b1 | coding | upstream | 175 | 61794146 ~ 61813456 (+) |
| LOC110537916 | LOC106600735 | coding | upstream | 40899 | 61768417 ~ 61772732 (+) |
| atp2a1 | atp2a1 | coding | upstream | 60311 | 61724768 ~ 61753320 (+) |
| LOC110537909 | ehd3 | coding | upstream | 114509 | 61682967 ~ 61699122 (+) |
| nudt9 | nudt9 | coding | upstream | 130868 | 61674727 ~ 61682763 (+) |
| LOC110537918 | NA | coding | downstream | 1584 | 61835185 ~ 61836333 (+) |
| nupr1b | LOC106600745 | coding | downstream | 61146 | 61894747 ~ 61896190 (+) |
| doc2a | LOC106600746 | coding | downstream | 118689 | 61952290 ~ 62003086 (+) |
| LOC110537935 | LOC106600756 | coding | downstream | 337038 | 62170639 ~ 62185966 (+) |
| zgc:193811 | LOC106600757 | coding | downstream | 367749 | 62201350 ~ 62205293 (+) |
| G1095866 | NA | non-coding | upstream | 5854 | 61807473 ~ 61807777 (+) |
| G1095825 | NA | non-coding | upstream | 95991 | 61717368 ~ 61717640 (+) |
| G1095792 | NA | non-coding | upstream | 136050 | 61636020 ~ 61677581 (+) |
| G1095770 | NA | non-coding | upstream | 142278 | 61586737 ~ 61671353 (+) |
| G1095883 | NA | non-coding | downstream | 14475 | 61848076 ~ 61849280 (+) |
| G1095893 | NA | non-coding | downstream | 44570 | 61878171 ~ 61878429 (+) |
| G1095894 | NA | non-coding | downstream | 45710 | 61879311 ~ 61879618 (+) |
| G1095895 | NA | non-coding | downstream | 46263 | 61879864 ~ 61880367 (+) |
| G1095900 | NA | non-coding | downstream | 59055 | 61892656 ~ 61892998 (+) |
| G1095540 | NA | other | upstream | 461286 | 61037739 ~ 61352345 (+) |
| mmp25a | LOC106600705 | other | upstream | 848036 | 60931123 ~ 60965921 (+) |
| G1095209 | NA | other | upstream | 994734 | 60816491 ~ 60818897 (+) |
| LOC110539079 | LOC106600700 | other | upstream | 1099619 | 60696612 ~ 60777061 (+) |
| G1095244 | LOC108238713 | other | upstream | 1427658 | 60385664 ~ 60385973 (+) |
| LOC118937701 | LOC100136295 | other | downstream | 612903 | 62441706 ~ 62448515 (+) |
| LOC100305204 | hebp2 | other | downstream | 1468890 | 63302491 ~ 63334694 (+) |
| LOC110538933 | LOC106600901 | other | downstream | 2054495 | 63888086 ~ 63908673 (+) |
| G1097063 | NA | other | downstream | 2302757 | 64136358 ~ 64136704 (+) |
| G1097116 | NA | other | downstream | 2394400 | 64228001 ~ 64228684 (+) |
