LOC110537924 (LOC106600747)


Basic Information

Item Value
gene id LOC110537924
gene name LOC106600747
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 62003208 ~ 62006661 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021624392.2
GGTAGAGTCAAATAACCCGGAAGTGAATGCTTCCGCGGATATGTTTACAAAACAGCCTAGCTTGGGTCGTTATTAGTAGGCTTTCAGTGAATTTTAACAAATATTTTGGGCAGGCAAAATTTCTAGAAAATGACTAAACTACAGCTTTTGAATGCTTACCTCACCGAGCGGTTAATGGTGGCTGTAGATGAGATACTGGAGGTGGTCGGGGGGACAGTGTCAGAATTCGAGGAGGAGACTGTCCGTacgaagagagagaatgaagtcCTAAAACGAAGGTTACGAGAAGTTGGACTCGACACGGGAACGGAATGTTCAGCAGTCTCGACCAGGCCTGTTTCTCTCTCAATGTCTGGGCAGCACCAGTGGAGTTCCGACCAGGGTCCAGACCTTGAGTCTACACAGACCCAGAACCACATGGTAATGAACCAGGATAAGATGCCTGCCACACATAGCCAGCTACCCACAGAGTGCACCGAGTGGAAGAGTCTGTGTAACTCTCCACATACCCTGTCCTCACAACAGACCGATACATCAGCTACCACCCCAGTACTAGCTCCATTGACTTCAGCGTCCGTGAAAAGGGACTTGGACGAAGAAGACGACCAGCTTCTGCTTCCCTCTGCAAATCCCTTCAGCAGCACATCATGCCCCGTGGACAGAGTGGTTTTACACTATAACTCTGAGGGCATCAAAACAGAGCCTAGTGATACTATCCCTACTGACTTGGGGTCAGTATCTGCTCAGATGGGGTGTGGTGAACTAAACCCCAGTTCGGACCCTGGACCAGCCACTGTTGAAACCAGGTACACTGTTTCAGACCTGAGCGCTGACCTGGAATCAGTGGTTGCAGACAGCAGCAGGTATGGTGCCTCTGCCTCGGGTGTCCCAACTGACCTGGTATCAGCTAGTGCGGCCATGATCCCAGATGGCTTTTTCCGTCAGATTGGCAGCGATGGTTGTGTAACAACAGGGCCAGAACTAGACTTCGGGGACACCACCAGTACCGTAGGTCCCTTGACCTCCCTGTTCTATCCGGGTCAAACCAGACGTCAAGCACAAACAAATAGATCAACAAATAGGGGTCATCAACAAATAAACAGGTCCACAAACAACAGGggtcaacaacaaacaaacaacaggGGGGATCAGAAGTCTCACCCGTGCCCTCAGTGTGGTAAGATATTCAGCCACGTGTCACGCCTCAAGATCCACCTCCgcattcacacaggggagaagccgtaCGTTTGTGCACTGTGTGGCAAGCGATTCAACAACGATGGCACACTGAGGAACCACCGGCGCGTTCACACGGAGCTGCGGCTGTACGGCTGCCCTGTCTGCGGCATGAGCTTCAAGGACGCCTACACGTGTAGGAAGCACCAGCGCGTTCACAATGGAATGCGGCCTGCCGGAGGCGGGGCCCACACCTGCAGCCTGTGTGGCAAGGCTTTCAGTGAGGCAGCCAAGCTGACCAAACACATCAGGACTCATGTGTCGGACATTGGGTGAGGGCAGTACAACCTATAAAGACTTTTTTATAGTGTAAATAAAGGCTTTATAAGCGCtatataaatgcttcacaaatgaTCTATAAGCCTATGTCATATACTATAAATGGTGTATAAAGGGTGACGTAACAATTCCCACTGTAGATTTTGCCAAATGTAAGTTAATAAACCATTTATAGATTATGACATGTAATTATGATTTGTAAAAGCATTTAAGGAGCGCTATATAAAGCCTTTATAGGTTTTTCTTTGCCAcggagctcccgagtggcgcatccTGCTAAGGCACTTCACCCGACGTGCAGAggggcgtcactacagcctgACGTGACCGGGAGTTCcaagggcagtgcacaattggcctagcactGTCCGGGTTTAGGGGAGGGTCGGGTTGGCAGGGGATTCCTCGTCTTAACTTGCTCTAGAGTCTTCGCGTGGCGGactgggcgcctgcaagctgactagGGTCGTCAATTGAACGGTGTCCCCCTCCAACACATTGGTCCGGCTGACTTCCGGGTCTTTATAAGATGCAGCGTGTTTGTCCGATCCTCACCTCTCCttagcccgttggggagttgccgTAATGGAacacaattggataccacaaaatgctctcatttctaaacggtaaaacGGACACGTGGGAAAATCTCtgatccaaaatgctggagtataagagacacattttattttagcttcactgtccaaatacatatggaGGGGTGTGTATGACCGTGGCTGCACCGGCTTCAACGGGACAGGTCTTTGTGTACTCTGTCTGTGGCATCCCGCTTCTGATTATGCAGTCATCAGCGATCCCACAAGGAGTAGTTGAAGTCATCATCAGATGTGATGAACTACCTTAAGCAagcagcaagtgtgtgtgtagacttttttttattttttattactgtgcgtgtgtgttttaacttactgtatgtgtgtttgtgcaccagcCCGTCCAAAGGGCAGCGGggccctgtctgtcagtctgttacAGGGAGGTTATTTACTTTTGCTGTGTTGTAGTATTGATCCACTTCCTGCTTGTGACCCGGGGGGTGGAGCCTACTGTCCTTGGAAACTGCAGATGATGAACCATAGGTTGAAGACACTGGTGTCGAACACAATTCCTTGAGAGCCACAGTCAGTGTCTGCTTGTTTTTgatcttaaaaaaaaatataggaTCTAGACCTGCAAGAAAAACCGGGGTCATGTTGACTTGGCATTAAACGGAAATTAAGTGAAACTatttgaacttgtccaataacaaaCACTGATTAATTATGTAAAAATCAGGAACCCGAAACCCACTGACACTGCAGTGTAGAATCTAAGGACTGGAGTTGTACTTGTGTGGTTTAGGAGTCCAAAACCACATTCCTTACCCCAGGACACTTCATAAGGTGACTATCCAGGACAATTAAAGGAAAATGAGCACCCCTTGTCTGCACTGAACTGAGGATTTTATTTAGAGGGACACAAACCGGCTTAGGATGCCTTCATTAGAGTCTCATCATGGTCCCTCATAGCTAGTGCTCAGACTTTGACTTAATGTGACACTCATAGTTCATAGCCTAATGTACAATAAATGGGTTTATTTTTAAA

Function

NR:

description
zinc finger and SCAN domain-containing protein 22-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021624392.2 True 3126 mRNA 0.48 2 62003208 62006661

Neighbor

gene id symbol gene type direction distance location
LOC110537921 sgf29 coding downstream 110653 61882680 ~ 61892555 (-)
LOC110537920 nfatc2ip coding downstream 129641 61867461 ~ 61873567 (-)
spns1 LOC106600742 coding downstream 136546 61833666 ~ 61866662 (-)
LOC118937697 NA coding downstream 202878 61772775 ~ 61800330 (-)
LOC110537915 LOC106601018 coding downstream 210764 61788631 ~ 61792444 (-)
LOC110537925 LOC106600748 coding upstream 174 62006835 ~ 62011339 (-)
LOC110537927 LOC106600749 coding upstream 11738 62018399 ~ 62037500 (-)
LOC110537928 mvp coding upstream 31671 62038332 ~ 62056939 (-)
LOC110537930 fam57b coding upstream 56679 62063340 ~ 62075904 (-)
LOC110537929 LOC106600752 coding upstream 69630 62076291 ~ 62098650 (-)
G1098008 NA non-coding downstream 107018 61894812 ~ 61896190 (-)
G1098006 NA non-coding downstream 121765 61881012 ~ 61881443 (-)
G1098005 NA non-coding downstream 122212 61880594 ~ 61880996 (-)
G1098003 NA non-coding downstream 123667 61879281 ~ 61879541 (-)
G1098001 NA non-coding downstream 125245 61877078 ~ 61877963 (-)
G1098096 NA non-coding upstream 6099 62012760 ~ 62012960 (-)
G1098099 NA non-coding upstream 9360 62016021 ~ 62016235 (-)
G1098234 NA non-coding upstream 296161 62302822 ~ 62303826 (-)
G1098254 NA non-coding upstream 348648 62355309 ~ 62355896 (-)
G1097953 sh2b1 other downstream 194707 61803710 ~ 61808501 (-)
ypel3 LOC103040367 other downstream 390083 61602944 ~ 61613176 (-)
G1097852 LOC106600701 other downstream 409745 61591238 ~ 61593463 (-)
G1097817 NA other downstream 498374 61503960 ~ 61504834 (-)
LOC110539101 NA other downstream 758881 61144112 ~ 61244327 (-)
G1098154 LOC106600756 other upstream 176089 62182750 ~ 62185946 (-)
G1098256 LOC106600954 other upstream 482506 62380280 ~ 62490254 (-)
LOC110537983 LOC106600926 other upstream 1446454 63453115 ~ 63467479 (-)
lmx1al LOC106600915 other upstream 1656544 63659040 ~ 63685854 (-)
G1099090 LOC105030512 other upstream 2133801 64140462 ~ 64140912 (-)

Expression

LOC110537924(LOC106600747) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 15.
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LOC110537924(LOC106600747) Expression in each Bioproject

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LOC110537924(LOC106600747) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 60.
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Co-expression Network