LOC118937701 (LOC100136295)


Basic Information

Item Value
gene id LOC118937701
gene name LOC100136295
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 62441706 ~ 62448515 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036938017.1
AAATTCTAAAGGTGATTGGCTACGCTCTGTGAGGGTGGATTTCACCGACGCATTCCGTTTGGAACAATAAATAGAGCGAACAAGGCTCCTTCCAGTTCACAAGTCTGAGAAGACGCATGAAGAAGTTCTTGCTTCAACAGTGATTGAACGGAACTCCTCTGCCTTCGTCCCGCGTTATCGAACATTCCGGGTTGATAACATATCACTGACTTGAACTATAATAGCAAAATAGTCTAAGAAACTCTATTTTTGTACTTTTCATTTCGATATAAAATTAAATCTGACGAGATGGAGTCTCAGATCCGCCAGAACTATCACCACGATTGCGAAGCTGCCATCAACCGGATGATCAACTTGGAGATGTTTGCCTCCTACACCTACACCTCAATGGCTTTCTATTTCTCCCGTGACGATGTGGCGCTGCGTGGCTTCGCGCATTTCTTCAAGGAGAACAGCGATGAGGAGCGGGAGCACGCCGACAAGCTACTCTCCTTCCAGAACAAGAGAGGTGGACGCATTTTACTCCAAGACATCAAGAAGCCAGAACGTGATGAGTGGGGCAATGGGCTGGAGGCCATGCAGTGTGCTCTGCAGCTGGAGAAGAATGTGAACCAGGCCCTGCTGGACCTGCACAAGATTGCCTCTGACAAGGTTGACCCCCATCTGTGTGACTTCCTGGAGACCCATTACCTGAATGAGCAGGTGGAGGCCATTAAGAAGCTGGGAGACCACATCACCAACCTCACCAAGATGGATGCTGTCAAAAACAAGATGGCAGAGTACCTGTTTGACAAGCACACCCTGGGAGGCCAGAGCTAAACCACTTCCATCCCCAGGCTACGGCCTCCAGCCTCAGACCAGGACTCCTGGCTTCTCTGATAGATCCTACTGGCTTTGCATTTATAGGGAGGGGAGTATTAAACTGGTGCAGTGCAACACAGCTGTAACATTGAGGTGTTTATGTTGACAACCCTACTGTATTGGAGGCAAGGCATCTTgtaaaacaataaaacatttcACTTAGGTT
>TU1246645
CTTATGCCATTACCACCAGGCTCTTGTGtgttactgtatctacaatagtcTGTATTCATTTTCTTTTCTGACCTGTGTTTTCCCTCTAGCTGTGTGACTTCCTGGAGACCCATTACCTGAATGAGCAGGTGGAGGCCATTAAGAAGCTGGGAGACCACATCACCAACCTCACCAAGATGGATGCTGTCAAAAACAAGATGGCAGAGTACCTGTTTGACAAGCACACCCTGGGAGGCCAGAGCTAAACCACTTCCATCCCCAGGCTACGGCCTCCAGCCTCAGACCAGGACTCCTGGCTTCTCTGATAGATCCTACTGGCTTTGCATTTATAGGGAGGGGAGTATTAAACTGGTGCAGTGCAACACAGCTGTAACATTGAGGTGTTTATGTTGACAACCCTACTGTATTGGAGGCAAGGCATCTTgtaaaacaataaaacatttcACTTAGGTTTTTGTTGGGATTTTCTAAGTGTTGCCC
>TU1246640
ACAATAAATAGAGCGAACAAGGCTCCTTCCAGTTCACAAGTCTGAGAAGACGCATGAAGAAGTTCTTGCTTCAACAGTGATTGAACGGAACTCCTCTGCCTTCGTCCCGCGTTATCGAACATTCCGGGTTGATAACATATCACTGACTTGAACTATAATAGCAAAATAGTCTAAGAAACTCTATTTTTGTACTTTTCATTTCGATATAAAATTAAATCTGACGAGATGGAGTCTCAGATCCGCCAGAACTATCACCACGATTGCGAAGCTGCCATCAACCGGATGATCAACTTGGAGATGTTTGCCTCCTACACCTACACCTCAATGGCTTTCTATTTCTCCCGTGACGATGTGGCGCTGCGTGGCTTCGCGCATTTCTTCAAGGAGAACAGCGATGAGGAGCGGGAGCACGCCGACAAGCTACTCTCCTTCCAGAACAAGAGAGGTGGACGCATTTTACTCCAAGACATCAAGGTGAGCACCTGAGCATCGAACACATTTAGATTGTAGACTGATAGAAAATGTCTTTACTCCATGGAGTGTCCAGCGTTAAGTTGATCTAGAGAACCTGGAGTATTGCTAAACATACTGC

Function

NR:

description
Ferritin, middle subunit

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036938017.1 False 1027 mRNA 0.48 4 62446441 62448488
TU1246645 False 480 lncRNA 0.46 2 62441706 62448515
TU1246640 True 592 TUCP 0.45 2 62446504 62447474

Neighbor

gene id symbol gene type direction distance location
LOC100136295 LOC100136295 coding upstream 4288 62440267 ~ 62442153 (+)
LOC110515900 LOC100136295 coding upstream 10612 62433720 ~ 62443344 (+)
LOC110537942 LOC106600765 coding upstream 36257 62402689 ~ 62410184 (+)
LOC110537940 LOC106600765 coding upstream 48141 62392443 ~ 62398300 (+)
aldh16a1 aldh16a1 coding upstream 80927 62350796 ~ 62365514 (+)
LOC110537949 LOC100136295 coding downstream 4231 62452719 ~ 62454817 (+)
LOC118937699 LOC100136295 coding downstream 10554 62459042 ~ 62461136 (+)
LOC118937700 LOC100136295 coding downstream 16872 62465360 ~ 62467468 (+)
LOC118937703 LOC106600765 coding downstream 108061 62556549 ~ 62558505 (+)
LOC110537952 LOC106600765 coding downstream 120111 62568599 ~ 62570726 (+)
G1096142 NA non-coding upstream 70738 62375451 ~ 62375703 (+)
G1096141 NA non-coding upstream 71904 62374184 ~ 62374537 (+)
G1096120 NA non-coding upstream 72688 62373184 ~ 62373753 (+)
G1096139 LOC106567613 non-coding upstream 75143 62371074 ~ 62371298 (+)
G1096198 NA non-coding downstream 3098 62451586 ~ 62458508 (+)
G1096169 NA non-coding downstream 23770 62472258 ~ 62487929 (+)
G1096157 NA non-coding downstream 26235 62474723 ~ 62516878 (+)
G1096199 NA non-coding downstream 28672 62477160 ~ 62491891 (+)
G1096152 NA non-coding downstream 40686 62489174 ~ 62495463 (+)
G1095540 NA other upstream 1094096 61037739 ~ 61352345 (+)
mmp25a LOC106600705 other upstream 1480846 60931123 ~ 60965921 (+)
G1095209 NA other upstream 1627544 60816491 ~ 60818897 (+)
LOC110539079 LOC106600700 other upstream 1732429 60696612 ~ 60777061 (+)
G1095244 LOC108238713 other upstream 2060468 60385664 ~ 60385973 (+)
LOC100305204 hebp2 other downstream 854003 63302491 ~ 63334694 (+)
LOC110538933 LOC106600901 other downstream 1439608 63888086 ~ 63908673 (+)
G1097063 NA other downstream 1687870 64136358 ~ 64136704 (+)
G1097116 NA other downstream 1779513 64228001 ~ 64228684 (+)
G1097122 NA other downstream 1806124 64254612 ~ 64255064 (+)
kcnc3a LOC106600760 coding upstream 98767 62238004 ~ 62342939 (+)

Expression


Co-expression Network