LOC110537965 (nsf)


Basic Information

Item Value
gene id LOC110537965
gene name nsf
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 63096526 ~ 63123775 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021624452.2
GATCATTGACGAGGAAGAAGAACGTTAATCTAGGGCTTCCTCTGAATTCGGCCAATCAAAATCGAATGCGTTGTTCTCGTCTGTGTAGTATGCAGTGCGTGAAGCGTTGGTTCCTCCTGCGCAGCTAGATAGGTAGGATACAGTCCATCTGCCTCTGCCGTCCGCATTCAGTGCTGCCGACTGCCATATTAATTACCATTCAGAGCTGCACCTCTGAACATCACCAAACTCGAAGATGGCGGCCCGGACGATGCAAGCGGCACGATGCCCGACAGATGACCTGTCGTTGACAAACTGTGCTGTGGTGAGCGAGAAGGATCTGCAGTCTGGACAACATGTGACTGTGAAGACTACGCCAACTCACAAGTTTGTGTTCACCACAAAAACCCACCACGCCATAGTCCCTGGCACTATCGCTTTCAGTCTGCCACagagGAAATGGGCCGGTCTGTCCATTGGACAGGAGGTGGAAGTGGCCAACTACAACTTTGACAAGTCCCAGCAGTGCATCGGTGCCATGACTATAGAGATTGACTTCCTCCAGAAGAAGAGCACGGACACCAGCCCCTACGACTCAGACAAGATGGCCAGCGAGTTCATTCAGCAGTTCAACAACCAGGGCTTCTCTGTCACCCAGCAGATGGTGTTTAGTTTCTGCGACAAGCTCTTTGGGCTGGTGATCAAAGACATTGAAGCCATGGACGCCAGCATCCTCAAGGGAGAGCCAGCATCAGGCAAGAAGCAGAAGATTGACATTGGGCTGCTGGTGGGGAACAGCCAGGTGGTTTTCGAGAAAGCAGAGAGCTCCTCCCTCACGTTAGTTGGcaaggccaagaccaaagagcagcGTCAGTCCATCATCAACCCGGACTGGAACTTTGAGCGCATGGGCATTGGTGGTCTGGACAAGGAGTTCTCCGACATCTTCCGCCGAGCCTTCGCCTCTCGTGTCTTCCCTCCTGACATCGTGGAACAGATGGGTTGTAAGCACGTGAAGGGAATTCTTCTCTTCGGGCCTCCTGGTTGTGGAAAGACTCTGATGGCCAGGCAGATTGGCAAGATGCTCAACTCCCGCGAGCCCAAGATCGTCAACGGCCCTGAGATCCTCAACAAGTTTGTTGGAGAGTCTGAGGCCAACATCCGCAAGCTATTCGCAGATGCAGAAGAGGAGCAGAAGAGGCTGGGTGCTAACAGTGGTCTGCACATAATCATCTTTGATGAGCTGGATGCCATCTGTAAGCAGAGAGGTACTGGCCAGGGCAGTACAGGAGTCCACGACACGGTGGTCAACCAGCTGCTGTCCAAGATAGACGGAGTAGAGCAGCTCAACAACATCTTGGTCATAGGGATGACCAACAGGCCTGACCTGATAGATGATGCCCTGATGAGGCCTGGCAGGTTTGAGGTCAAGATGGAGATCGgtcTTCCGGATGAGAAGGGGCGTGTTCAGATTCTCAACATTCACACTAATAAGATGCGTGACTTCGGCCTGCTGGCTCCTGATGTGGACGTGAAGGAGCTGGCTGCCGGAACCAAGAACTACAGTGGTGCTGAACTGGAGGGGCTGGTCAGAGCTGCCCAATCAACAGCCATGAACCGCCACATTAAGGCCACAGCCACAGTGGAGGTGGACACAGAGAGAGCCGAGAAGCTGCAGGTCACCAGAAGCGACTTCATGGGCTCCCTGAACAACGACATTAAACCAgCATTTGGTTCCAACCAGGAGGACTACGCCAGCTACATCATGAACGGCATCATCAAGTGGGGCGACCCGGTGACCTGTGTGCTGGATGACGGGGAGCTGCTGGTGCAGCAGACCAAGAACAGCGACCGCACACCACTGGTGGCCGTGCTACTGGAGGGACCCCCTCACAGTGGAAAGACGGCCCTGGCTGCCCAAATCTCGGAGAGCTCAGAGTTCCCCTTCATCAAGATCTGTTCCCCGGACAAGATGATCGGTTTCTCCGAAAACTCCAAGTGCCTGGCTATCAAGAAGATCTTTGAGGACGCCTACAAGTCTCAGCTGAGCTGTGTGGTGGTGGACGACATTGAGCGTCTCCTAGACTACGTCCCCATTGGACCTCGCTTCTCCAACATGGTTCTCCAGGCCCTGCTGGTGCTGCTGAAGAAGACTCCTCCGAAAGGCCGTAAGCTGTTGATCATCGGAACCACCAGCCGTAAGGAGGTGCTGCGGGAGATGGAGATGCTGGACGCCTTCAGTACCACCATCCACGTCCCCAACATCTCTACTGGAGAACACCTGGTGGAAGCCCTAGAGCTACTGGGAAGCTTCACGGACGCAGAGCGTGTGACCATCGGCCAGCACGTCAAGGGAAAGAGGGTCTGGATTGGCATCAAGAAGCTCCTGATGCTCATCGAAATGTCCCTGCAGATGGATGTGGAGTACAGAGTCACTAAGTTCCTGCAGCTTCTTAGAGATGAGGGGGCTGAACGCACTGACCGCAATGACCGCAGCTACAAGTTCGACTAGAGCTGAAGGAGCGTCTGACCAAGagacaagaggaggagaggaggacacccTCTGTTTTCCATCCATTCTCATCCAACCAATCCGAGCGGGAGAAGAAGTCGCCCCGCCCCCTCTCACCCACGCATGTTTCAGAGGCAACTGGCGTCATCATCCATCCGCCCGACACTTATCGACATATCACCTCACAGAAACCTATTGAAAATCGTACTGTTCCAATATGTTATCCGTATGAAACGCAATATGGATTGCAAAAGTGCTGTCTTGTGCATTGTGCGTATATTTAGCCACGTATGTTTTAGCTTCCTGTATTTACAGTGCTGCGTATCTGTCTTGCTATCTATATTTATGCAGACCAGTAAGATATATCAGTCTTGAAAACATGATATCTGTATTCTATATATACATAGATTCATATGAAGCGCAAGTCATCGCAACGATTTGAATATTCCGATGATAACATAGACAGTGTGGTGGAAGTGAGATGTGTCGTTTCGGGTGTAAATGTATCCCACCCCtatgttatttattttctgtACATAGTATAtataagatacagtatatcatgACTGATTTCAAATCATTCTATTGACTATTATTGAGTAATATATCAGTATTGTTGTTGATCTCACTCCAAACTTGAAGATTGTGGTGTTGGATTATAGCTTGGTTGTAGTCTGTCTAATATAGAGACCGTGGGTGTGTTCGAGAccagtgttaaacaattcaacaCTTTTGGAAATGGTATATGTTACAAAGAAACGTTTATTACTTATCAAATCAGCTCTATGTGTGACTGTGATTTCAAtattttgtgtgtgcatgtgtgtgtgtgtgtgtatgaacacGCATTGCTTCTGTGTATGCCTGTAAGAGTGAGCGTGTTTGTGTCTGTGCGcaagtacagtatgtgtgtaatTTCATCCAAATTTTACCAGTCTGTTGTTGTGATGTGTTTGTTCATTTATTGCTTTATGTGAACAGTGCTTGTTGTCAAAAGCTATTTTTATGTTCTGTGAATTGACCGTGTGTGTCAACATGCCGATGTGTTATTGCAATAAAAGCACAGATACACAAGGTTAGAACAACA
>XM_021624453.2
CGAGATCATTGACGAGGAAGAAGAACGTTAATCTAGGGCTTCCTCTGAATTCGGCCAATCAAAATCGAATGCGTTGTTCTCGTCTGTGTAGTATGCAGTGCGTGAAGCGTTGGTTCCTCCTGCGCAGCTAGATAGGTAGGATACAGTCCATCTGCCTCTGCCGTCCGCATTCAGTGCTGCCGACTGCCATATTAATTACCATTCAGAGCTGCACCTCTGAACATCACCAAACTCGAAGATGGCGGCCCGGACGATGCAAGCGGCACGATGCCCGACAGATGACCTGTCGTTGACAAACTGTGCTGTGGTGAGCGAGAAGGATCTGCAGTCTGGACAACATGTGACTGTGAAGACTACGCCAACTCACAAGTTTGTGTTCACCACAAAAACCCACCACGCCATAGTCCCTGGCACTATCGCTTTCAGTCTGCCACagagGAAATGGGCCGGTCTGTCCATTGGACAGGAGGTGGAAGTGGCCAACTACAACTTTGACAAGTCCCAGCAGTGCATCGGTGCCATGACTATAGAGATTGACTTCCTCCAGAAGAAGAGCACGGACACCAGCCCCTACGACTCAGACAAGATGGCCAGCGAGTTCATTCAGCAGTTCAACAACCAGGGCTTCTCTGTCACCCAGCAGATGGTGTTTAGTTTCTGCGACAAGCTCTTTGGGCTGGTGATCAAAGACATTGAAGCCATGGACGCCAGCATCCTCAAGGGAGAGCCAGCATCAGGCAAGAAGCAGAAGATTGACATTGGGCTGCTGGTGGGGAACAGCCAGGTGGTTTTCGAGAAAGCAGAGAGCTCCTCCCTCACGTTAGTTGGcaaggccaagaccaaagagcagcGTCAGTCCATCATCAACCCGGACTGGAACTTTGAGCGCATGGGCATTGGTGGTCTGGACAAGGAGTTCTCCGACATCTTCCGCCGAGCCTTCGCCTCTCGTGTCTTCCCTCCTGACATCGTGGAACAGATGGGTTGTAAGCACGTGAAGGGAATTCTTCTCTTCGGGCCTCCTGGTTGTGGAAAGACTCTGATGGCCAGGCAGATTGGCAAGATGCTCAACTCCCGCGAGCCCAAGATCGTCAACGGCCCTGAGATCCTCAACAAGTTTGTTGGAGAGTCTGAGGCCAACATCCGCAAGCTATTCGCAGATGCAGAAGAGGAGCAGAAGAGGCTGGGTGCTAACAGTGGTCTGCACATAATCATCTTTGATGAGCTGGATGCCATCTGTAAGCAGAGAGGTACTGGCCAGGGCAGTACAGGAGTCCACGACACGGTGGTCAACCAGCTGCTGTCCAAGATAGACGGAGTAGAGCAGCTCAACAACATCTTGGTCATAGGGATGACCAACAGGCCTGACCTGATAGATGATGCCCTGATGAGGCCTGGCAGGTTTGAGGTCAAGATGGAGATCGgtcTTCCGGATGAGAAGGGGCGTGTTCAGATTCTCAACATTCACACTAATAAGATGCGTGACTTCGGCCTGCTGGCTCCTGATGTGGACGTGAAGGAGCTGGCTGCCGGAACCAAGAACTACAGTGGTGCTGAACTGGAGGGGCTGGTCAGAGCTGCCCAATCAACAGCCATGAACCGCCACATTAAGGCCACAGCCACAGTGGAGGTGGACACAGAGAGAGCCGAGAAGCTGCAGGTCACCAGAAGCGACTTCATGGGCTCCCTGAACAACGACATTAAACCAgCATTTGGTTCCAACCAGGAGGACTACGCCAGCTACATCATGAACGGCATCATCAAGTGGGGCGACCCGGTGACCTGTGTGCTGGATGACGGGGAGCTGCTGGTGCAGCAGACCAAGAACAGCGACCGCACACCACTGGTGGCCGTGCTACTGGAGGGACCCCCTCACAGTGGAAAGACGGCCCTGGCTGCCCAAATCTCGGAGAGCTCAGAGTTCCCCTTCATCAAGATCTGTTCCCCGGACAAGATGATCGGTTTCTCCGAAAACTCCAAGTGCCTGGCTATCAAGAAGATCTTTGAGGACGCCTACAAGTCTCAGCTGAGCTGTGTGGTGGTGGACGACATTGAGCGTCTCCTAGACTACGTCCCCATTGGACCTCGCTTCTCCAACATGGTTCTCCAGGCCCTGCTGGTGCTGCTGAAGAAGACTCCTCCGAAAGGCCGTAAGCTGTTGATCATCGGAACCACCAGCCGTAAGGAGGTGCTGCGGGAGATGGAGATGCTGGACGCCTTCAGTACCACCATCCACGTCCCCAACATCTCTACTGGAGAACACCTGGTGGAAGCCCTAGAGCTACTGGGAAGCTTCACGGACGCAGAGCGTGTGACCATCGGCCAGCACGTCAAGGGAAAGAGGGTCTGGATTGGCATCAAGAAGCTCCTGATGCTCATCGAAATGTCCCTGCAGATGGATGTGGAGTACAGAGTCACTAAGTTCCTGCAGCTTCTTAGAGATGAGGGGGCGTTGGATGACGCCAACCACATCCGAATTTAAGCTGTCGCCGAGGTGAACGCACTGACCGCAATGACCGCAGCTACAAGTTCGACTAGAGCTGAAGGAGCGTCTGACCAAGagacaagaggaggagaggaggacacccTCTGTTTTCCATCCATTCTCATCCAACCAATCCGAGCGGGAGAAGAAGTCGCCCCGCCCCCTCTCACCCACGCATGTTTCAGAGGCAACTGGCGTCATCATCCATCCGCCCGACACTTATCGACATATCACCTCACAGAAACCTATTGAAAATCGTACTGTTCCAATATGTTATCCGTATGAAACGCAATATGGATTGCAAAAGTGCTGTCTTGTGCATTGTGCGTATATTTAGCCACGTATGTTTTAGCTTCCTGTATTTACAGTGCTGCGTATCTGTCTTGCTATCTATATTTATGCAGACCAGTAAGATATATCAGTCTTGAAAACATGATATCTGTATTCTATATATACATAGATTCATATGAAGCGCAAGTCATCGCAACGATTTGAATATTCCGATGATAACATAGACAGTGTGGTGGAAGTGAGATGTGTCGTTTCGGGTGTAAATGTATCCCACCCCtatgttatttattttctgtACATAGTATAtataagatacagtatatcatgACTGATTTCAAATCATTCTATTGACTATTATTGAGTAATATATCAGTATTGTTGTTGATCTCACTCCAAACTTGAAGATTGTGGTGTTGGATTATAGCTTGGTTGTAGTCTGTCTAATATAGAGACCGTGGGTGTGTTCGAGAccagtgttaaacaattcaacaCTTTTGGAAATGGTATATGTTACAAAGAAACGTTTATTACTTATCAAATCAGCTCTATGTGTGACTGTGATTTCAAtattttgtgtgtgcatgtgtgtgtgtgtgtgtatgaacacGCATTGCTTCTGTGTATGCCTGTAAGAGTGAGCGTGTTTGTGTCTGTGCGcaagtacagtatgtgtgtaatTTCATCCAAATTTTACCAGTCTGTTGTTGTGATGTGTTTGTTCATTTATTGCTTTATGTGAACAGTGCTTGTTGTCAAAAGCTATTTTTATGTTCTGTGAATTGACCGTGTGTGTCAACATGCCGATGTGTTATTGCAATAAAAGCACAGATACACAAGGTTAGAACAACA

Function

symbol description
nsf Enables PDZ domain binding activity and ionotropic glutamate receptor binding activity. Involved in intracellular protein transport; positive regulation of protein catabolic process; and positive regulation of receptor recycling. Located in Golgi apparatus; cytosol; and plasma membrane. Implicated in developmental and epileptic encephalopathy.

NR:

description
vesicle-fusing ATPase-like isoform X2

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG:

id description
K06027 NSF, SEC18; vesicle-fusing ATPase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021624452.2 False 3578 mRNA 0.50 21 63096526 63123772
XM_021624453.2 True 3625 mRNA 0.50 22 63096526 63123775
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110537966 tr-alpha coding downstream 16018 62963766 ~ 63080508 (-)
LOC110537963 NA coding downstream 165554 62921632 ~ 62931184 (-)
si:dkey-16p21.7 LOC106600941 coding downstream 181844 62884863 ~ 62914682 (-)
cpt1cb LOC106600940 coding downstream 211968 62826509 ~ 62884558 (-)
LOC110537960 LOC106600943 coding downstream 270091 62795648 ~ 62826435 (-)
LOC110537968 LOC106600938 coding upstream 1338 63125113 ~ 63130872 (-)
LOC110537971 LOC106600935 coding upstream 67489 63191264 ~ 63205103 (-)
camsap3 LOC106600930 coding upstream 235731 63359503 ~ 63412677 (-)
xab2 syf1 coding upstream 291288 63415063 ~ 63430835 (-)
LOC110537980 NA coding upstream 310694 63434469 ~ 63437260 (-)
G1098553 NA non-coding downstream 112844 62975619 ~ 62983682 (-)
G1098552 NA non-coding downstream 115248 62974792 ~ 62981278 (-)
G1098555 NA non-coding downstream 115850 62980100 ~ 62980676 (-)
G1098554 NA non-coding downstream 117093 62975958 ~ 62979433 (-)
G1098546 NA non-coding downstream 138795 62957457 ~ 62957731 (-)
G1098707 NA non-coding upstream 126202 63249977 ~ 63250176 (-)
G1098723 NA non-coding upstream 154748 63278523 ~ 63278735 (-)
G1098724 NA non-coding upstream 155154 63278929 ~ 63279348 (-)
G1098733 NA non-coding upstream 165236 63289011 ~ 63289591 (-)
G1098693 NA non-coding upstream 175025 63298800 ~ 63333498 (-)
G1098256 LOC106600954 other downstream 606272 62380280 ~ 62490254 (-)
G1098154 LOC106600756 other downstream 910580 62182750 ~ 62185946 (-)
G1097953 sh2b1 other downstream 1288025 61803710 ~ 61808501 (-)
ypel3 LOC103040367 other downstream 1483401 61602944 ~ 61613176 (-)
G1097852 LOC106600701 other downstream 1503063 61591238 ~ 61593463 (-)
LOC110537983 LOC106600926 other upstream 329340 63453115 ~ 63467479 (-)
lmx1al LOC106600915 other upstream 539430 63659040 ~ 63685854 (-)
G1099090 LOC105030512 other upstream 1016687 64140462 ~ 64140912 (-)
G1099144 LOC105893191 other upstream 1097193 64220968 ~ 64221572 (-)
G1099482 LOC106600895 other upstream 1203124 64326899 ~ 64332071 (-)

Expression

LOC110537965(nsf) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 125.
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LOC110537965(nsf) Expression in each Bioproject

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LOC110537965(nsf) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 7500.
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Co-expression Network