LOC100305204 (hebp2)


Basic Information

Item Value
gene id LOC100305204
gene name hebp2
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 63302491 ~ 63334694 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001165108.1
AGGCCAGTGGATGCATCTGAACTGAGCTGATCTAAAAGACACACATTCAGCACAATGGTTTATTTTGTAGGGTTGGTTGGCTTGCTTCTCATCTTGACTGCTGAAGCCAGAGTTGGGATCTCCTCTGAGTCTAGCTTCTGCACCGAGTCAAGGGAATGTCTGCTGTATGATCTGGTGTGCAAGAATGACGATTATGAGGTGCGCCACTATGACTCGGTGAAATGGGTGTCGACAGACGAGGAAAGCTACTTCATGGACAAGGCCACTTACACTGCCTTCCGGAGACTCTTCAAATACATCACCGGATCCAAcgaggctgGCGTCAACATTGACATGACAACTCCGGTGACTGTCAAAATTGAGGAGAAGAAGAGGTTGTGGCAGTCGTCTGTCTTCACCCTCAACTTCCTCCTGCCGTCTGACTATCAGTTGGCTCCTCCCCAACCCACTGATGGCAGTGTGTATTTTACAGAGACGCCAGACATGAAAGTGTACGTGAGGAGCTACGGTGGATGGATGATGTCTTTGACATCCAGTGTAAACTCTATGCTGCTGAAAAGGCAGCTAGACAACGTCCAGGCCACCTACAACAAAGACTACCACTATGCTGTGGGATATGACAGCCCAATGAAGATTCTGAATAGGCACAACGAGGTGTGGTACATGGTTGAGGGAGAGCCTGTGTGCCCTACCTCCTCCTAAACATCCTCCTCCATTACTGCTGAGTCTGGCATAACCACTTTGAGGAGGACCAATGGGAGGTGCATGGTAGACTGAGAACATCTGAGAAAATGTGGTTTGGGGGCAAAAAATATATTAACTAAGACAtgtgtctctgatctggtggcaCTATAATCCAAAATCAATATGCCACATACTATAGAGTGTATACATATGTCTTAGAATGTGCTCAttcttattcagtgttcagtttgttaGGAAGGTGCcttgcccacccccccccccagccccatAATTCGAACTCTGTACGTATTGACATGTTCTAACAATGTGGGGTGAATGTAGATGTAGACAGGGATACATTTGTACTAAAGTCTGTTTATGAAAAGTAACTTCCCTTTTGACAAACTACTACATTCAatgttgaacatgatttggatCTTTTGTCTGTGTTGAGTTTGTTCCCTTAAATATATGCCAAACAAATCCTCTCCAGCTCTTTGGTAAAACTTGAGTGGTGGTGAATACAGTAGGATTATAATGAACATAAAATCTTGGGTCATTGTGTCAGAAACCATATTTGTTACATAGTCTGTCCATGAGAgactatgatgaacattacaaaTGAATTTTTTTCCAGTCACTCCTTTCACAAATACAGTGAAGTCATATTTGAAAGCC
>TU1247110
ACCCTCAGTTGGTATAAATAGTTTCTCTGCAAGCATTTCCCTCAGGCCAGTGGATGCATCTGAACTGAGCTGATCTAAAAGACACACATTCAGCACAATGGTTTATTTTGTAGGGTTGGTTGGCTTGCTTCTCATCTTGACTGCTGAAGCCAGAGTTGGGATCTCCTCTGAGTCTAGCTTCTGCACCGAGTCAAGGGAATGTCTGCTGTATGATCTGGTGTGCAAGAATGACGATTATGAGGTGCGCCACTATGACTCGGTGAAATGGGTGTCGACAGACGAGGAAAGCTACTTCATGGACAAGGCCACTTACACTGCCTTCCGGAGACTCTTCAAATACATCACCGGCTCCAAcgaggctggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgt

Function

symbol description
hebp2 Predicted to enable heme binding activity. Predicted to be active in cytoplasm. Is expressed in several structures, including extension; hypophysis; neuromast; peripheral olfactory organ; and yolk syncytial layer. Orthologous to human HEBP2 (heme binding protein 2).

NR:

description
heme-binding protein 2 precursor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001165108.1 False 1362 mRNA 0.44 7 63302534 63305160
TU1247110 True 398 TUCP 0.48 5 63302491 63334694

Neighbor

gene id symbol gene type direction distance location
LOC110537972 LOC106600934 coding upstream 14814 63283815 ~ 63287720 (+)
LOC110537970 LOC106600936 coding upstream 121305 63173108 ~ 63181229 (+)
LOC110537969 LOC106600937 coding upstream 137317 63150826 ~ 63165217 (+)
prl LOC100136792 coding upstream 349801 62948706 ~ 62952733 (+)
syt5a LOC106600948 coding upstream 552954 62733537 ~ 62749580 (+)
LOC110537973 LOC106600933 coding downstream 24747 63329907 ~ 63333490 (+)
nr5a5 LOC106600931 coding downstream 41397 63346557 ~ 63358913 (+)
LOC110537979 NA coding downstream 120226 63425386 ~ 63426072 (+)
LOC110537978 LOC106600927 coding downstream 125753 63430913 ~ 63433060 (+)
brd4 LOC106600922 coding downstream 162467 63467627 ~ 63529475 (+)
G1096640 NA non-coding upstream 12969 63288788 ~ 63289565 (+)
G1096635 NA non-coding upstream 23171 63279077 ~ 63279363 (+)
G1096603 NA non-coding upstream 73424 63228729 ~ 63229110 (+)
G1096570 LOC106600935 non-coding upstream 110477 63191096 ~ 63192057 (+)
G1096539 NA non-coding upstream 166679 63135652 ~ 63135855 (+)
G1096664 NA non-coding downstream 36056 63341216 ~ 63346315 (+)
G1096675 NA non-coding downstream 65082 63370242 ~ 63370501 (+)
G1096676 NA non-coding downstream 65539 63370699 ~ 63370992 (+)
G1096678 NA non-coding downstream 66826 63371986 ~ 63387765 (+)
G1096690 NA non-coding downstream 86955 63392115 ~ 63392335 (+)
LOC118937701 LOC100136295 other upstream 855060 62441706 ~ 62448515 (+)
G1095540 NA other upstream 1950189 61037739 ~ 61352345 (+)
mmp25a LOC106600705 other upstream 2336939 60931123 ~ 60965921 (+)
G1095209 NA other upstream 2483637 60816491 ~ 60818897 (+)
LOC110539079 LOC106600700 other upstream 2588522 60696612 ~ 60777061 (+)
LOC110538933 LOC106600901 other downstream 582936 63888086 ~ 63908673 (+)
G1097063 NA other downstream 831198 64136358 ~ 64136704 (+)
G1097116 NA other downstream 922841 64228001 ~ 64228684 (+)
G1097122 NA other downstream 949452 64254612 ~ 64255064 (+)
si:dkey-110g7.8 LOC106600891 other downstream 1064995 64369958 ~ 64376356 (+)
LOC110537984 LOC106600921 coding downstream 201206 63535900 ~ 63539789 (+)

Expression


Co-expression Network