xab2 (syf1)


Basic Information

Item Value
gene id xab2
gene name syf1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 63415063 ~ 63430835 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021624465.2
GGGCGGGGTTTATTCTACGTTCTGAACACGTTGGCGGAGTCAGGAAGTTTAGTAACAATACATACATTTTGGGGTACTTTTCACACTACGGGCGTTAATTTTGATCTTAAAAACAAAAATGCCCTCTCTAAATGGGAAACCGGACGTCATGTTTGAGGAAGATGACCTGCCTTATGAGGAGGAGATCATCAGGAATCCGTACTCGGTCAAGTGCTGGATGCGCTACATCGAGTTCAAACAGAATGGCGTCAAGTCCGTCCTCAACATGATCTATGAACGAGCTCTGAAAGAGCTACCTGGCAGTTACAAGTTATGGTACAACTAcctgagagagagacggaaacagGTCAAAGGGAAGTGCATCACGGAGCCAGCCTACGAGGAGATCAACAACTGCCATGAAAGAGCACTGGTTTTCATGCACAAGATGCCGAGGATCTGGCTGGACTACTGCCAGTTCCTGGTGGCTCAGTGTAAGATCACCAGGAGCAGACGCACGTTTGACCGAGCACTCCGAGCCCTGCCCGTCACTCAGCACCCTCGCATCTGGCCCCTGTACCTCCGCTTTGCCCGGAACCTACCCCTGCCTGAGACCGCCATCCGTGTCTATCGCAGGTACCTCAAGCTGTCCCCAGAGAATGCAGAGGAGTACATAGATTACCTGCGTTCCTGCAGCAAGCTGGATGAAGCAGCAGTGCGACTGGCAGCCGTTGTCAACGATGAGAGCTTTGTGTCCAAGGAGGGCAAGTCTAACTACCAGCTATGGCACGAGCTGTGTGACCTGATCTCTCAGAACCCAGACAAGGTGAACTCTCTGAATGTTGGGGCAATCATCCGTGGAGGCCTCACTCGTTTCACAGACCAGCTGGGCAAACTCTGGTGCTCCCTGGCTGACTACTACATCCGCAGTGGACATTTTGAAAAGGCTCGTGATGTGTATGAGGAGGCCATCTTGACGGTGGTGACGGTGAGAGATTTCACCCAGGTGTTCGACAGCTACGCCCAGTTTGAGGAGAGCATGATCGCTGCCAAGATGGAGACTACCTCCGAGATGGGGAAAGATGAAGAAGAGGACATAGACCTGGAGCTGCGTCTGGCCCGCTTTGAGCAGCTGATCGCCCGCAGGCCCCTCCTGCTGAACAGTGTGCTGCTCAGACAGAACCCCCACAACGTCCACGAGTGGCATAAGAGGGTCAAACTGTACGAGGGGAAACCACGACAGATCATCAACACCTACACAGAGGCAGTTCAGACTGTGGACCCTATGAAGGCTACAGGGAAACCCAGCTCTCTCTGGGTCTCCTTCGCCAAGTTCTACGAGGAGAACGAGCAGCTGGACGACGCGCGGACCATCTTTGAGAAAGCCACCAAGGTGAACTACAAGCAGGTTGACGACCTGGCTGGCGTGTGGTGTGAATACGGGGAGATGGAGCTACGCCATGAGAACTACGAACAGGCGCTACGTATACTGAGGAAAGCAACTGCCATCCCGTCCAAGAAGGCGGAGTACTTTGACGTGTCAGAGCCGGTGCAGAACAGAGTGTACAAGTCTCTGAAGGTCTGGTCCATGCTGGCTGACCTGGAGGAGAGTATGGGAACCTTCCAGTCCACCAAGGCGGTGTACGACCGCATCATTGACCTGCGCATAGCCACGCCCCAGATAATCATCAACTACGCCATGTTCCTGGAGGAGCACAACTACTTTGAGGAGAGCTTCAAGGCGTACGAGCGCGGCATCGCCCTCTTCAGGTGGCCCAACGTCTATGACATCTGGAACACCTACCTCACCAAGTTCATCGACCGCTACGGGGGCAAGAAGCTGGAGAGGGCCCGGGACCTGTTTGAGCAAGCGCTGGATGGCTGTCCAGCAAAGTTCGCCAAGACCATCTACCTGCTGTACGCCAAACTGGAGGAGGAGTTTGGGTTGGCGCGTCATGCCATGGCGGTGTATGAAAGAGCCACACAGGCAGTGGACAACACGGAGAGGCATCACATGTTCAACATCTACATCAAGAGGGCTGCAGAGATCTACGGCGTCACCTACACCAGAGCTATCTACCAGAAAGCCATTGAGGTGCTTCCAGACGAACACTCCAGGGACATGTGTCTGCGCTTCGCTGACATGGAGAGCAAACTGGGCGAGATCGACCGGGGACGAGCCATATACTCCTACTGCTCTCAGATCTGTGACCCAAGGatGACGGCCACGTTCTGGCAGACATGGAAGGAGTTTGAGATCCGCCATGGGAACGAAGACACTATCCGGGAAATGCTGAGGATCAAGCGTAGCGTCCAGGCCACGTACAACACACAGGTCAACTTCATGTCCTCACAGATGATGAAGGCCACCACCAACGCCACCGGCACCATCTCAGATCTTGCCCCGGGCCAGATGGGGCTGGATGATATGAAGCTGTTGGAGCAGCAGGCCCAACTGCTGGCCGCCGAGGCTGAACAGGACAAACCCAAACTCAAAGAGAAGATCCTCTTCGTCAGGAGTGACACGTCACACAGCGAGCTGGCTGAACTGGCCAAACAAGCCAACCCTGATGAGATTGATAttgatgatgaggatgaggatggtgATGAAGACCAGGGCCCTGAGGAGGTGCAGCTGGAACAGAAGAGCGTCCCCACCGCTGTCTTTGGAGGTCTGAAAGAAGGAGAAGATTGAATACAGATATGACATCACTGACGAGCTCCCTGGTCCACGACTGGAGCCTTTTCAACCCCTGTAAAATGTATGATGAGAATAGATCGTATGGAATGTGAACTTTGTCATTGATCTTTTCTTTGTTGTTGACTGTAAGGGTTCTTGCTCTACATTCATAGATTGTCAAGTCTGCACCAGATCTGTGAATAAAAATCAGATTTATGAATAGAA

Function

symbol description
syf1 Predicted to contribute to first spliceosomal transesterification activity and second spliceosomal transesterification activity. Involved in generation of catalytic spliceosome for first transesterification step. Located in cytosol and nucleus. Part of Prp19 complex and U2-type spliceosomal complex. Orthologous to human XAB2 (XPA binding protein 2).

NR:

description
pre-mRNA-splicing factor SYF1-like

GO:

id name namespace
GO:0006396 RNA processing biological_process
GO:0005622 intracellular anatomical structure cellular_component

KEGG:

id description
K12867 SYF1, XAB2; pre-mRNA-splicing factor SYF1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021624465.2 True 2884 mRNA 0.53 19 63415063 63430835
Loading

Neighbor

gene id symbol gene type direction distance location
camsap3 LOC106600930 coding downstream 2386 63359503 ~ 63412677 (-)
LOC110537971 LOC106600935 coding downstream 209960 63191264 ~ 63205103 (-)
LOC110537968 LOC106600938 coding downstream 284191 63125113 ~ 63130872 (-)
LOC110537965 nsf coding downstream 291288 63096526 ~ 63123775 (-)
LOC110537966 tr-alpha coding downstream 334555 62963766 ~ 63080508 (-)
LOC110537980 NA coding upstream 3634 63434469 ~ 63437260 (-)
stxbp2 LOC106600924 coding upstream 13892 63444727 ~ 63461648 (-)
LOC110537983 LOC106600926 coding upstream 31015 63453115 ~ 63467479 (-)
pbx4 LOC106600918 coding upstream 135030 63565865 ~ 63619465 (-)
LOC110537988 LOC106600917 coding upstream 189533 63620368 ~ 63632955 (-)
G1098754 NA non-coding downstream 75545 63339222 ~ 63339518 (-)
G1098693 NA non-coding downstream 81565 63298800 ~ 63333498 (-)
G1098733 NA non-coding downstream 125472 63289011 ~ 63289591 (-)
G1098724 NA non-coding downstream 135715 63278929 ~ 63279348 (-)
G1098788 NA non-coding upstream 3988 63434823 ~ 63435055 (-)
G1098790 LOC100136012 non-coding upstream 8224 63439059 ~ 63439336 (-)
G1098791 NA non-coding upstream 8843 63439678 ~ 63439948 (-)
G1098842 NA non-coding upstream 104047 63534882 ~ 63535102 (-)
G1098847 NA non-coding upstream 111239 63542074 ~ 63542578 (-)
G1098256 LOC106600954 other downstream 924809 62380280 ~ 62490254 (-)
G1098154 LOC106600756 other downstream 1229117 62182750 ~ 62185946 (-)
G1097953 sh2b1 other downstream 1606562 61803710 ~ 61808501 (-)
ypel3 LOC103040367 other downstream 1801938 61602944 ~ 61613176 (-)
G1097852 LOC106600701 other downstream 1821600 61591238 ~ 61593463 (-)
lmx1al LOC106600915 other upstream 232370 63659040 ~ 63685854 (-)
G1099090 LOC105030512 other upstream 709627 64140462 ~ 64140912 (-)
G1099144 LOC105893191 other upstream 790133 64220968 ~ 64221572 (-)
G1099482 LOC106600895 other upstream 896064 64326899 ~ 64332071 (-)

Expression

xab2(syf1) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 20.
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xab2(syf1) Expression in each Bioproject

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xab2(syf1) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
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Co-expression Network