LOC110538933 (LOC106600901)


Basic Information

Item Value
gene id LOC110538933
gene name LOC106600901
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 63888086 ~ 63908673 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036938065.1
CAAACATCACTTGAAGTGTACTTCCGTGCTTGCGGGATATctataaaatctttgaaaataaCTTTAATAACAACTTGTTGGCCTACAGTTGAAAACGTTTTCATTACGTCCTCTACGTCCTTCTTCCAAACGCGCGTCTATTGGTATGTGCATTCGTCTGAATGAATCAATCCGCCCGGGGCCTGTATTGAAATGTAAATAGTCCACACAATGTCAATCAAACTTTAATTTTTCAGTGTATATATATGCAACCCAATACGAACAGGATCGTTCATTATTCAACTATTAATAATATTCAGTGACCTGGTAAATACTGGATTTTGTTTCGACAAAGAAAACTGTATTGAAGAGTGGCAGTTGCGTCTGCGCCAATGGATTTTCTGACAGATGAGGAGTTACTGCGGTTTTTCCGCTGTAGTAGGACAGAGATGTCGTGCATGGAGCAACCACACACATTTCTTAACCAGCTCCGAGACCACAACCTCATTCCGGAAGAAATGTACAAGAAGCTGATTCGGATGAGGAGTAAGGAGCTGAGGGAGAAGGGTGTGTACCAGGTGTTGGACTGGGTGGAGGCAGAGAGGCCCAACAGCATCAAGGTGTTCTGGAACTGTGTGTTCAGGGACCACCTCCTGCAGCAGTACCCCACGTTACGCCTGCTCCGAAACCGCCTGCTGGACGGGTCGTTCACATTCTATGAGAAACTGCCAAAGAAggtggagaaggaagaggaggaggaggataaaaAGAAGGCTTCagctgaaggagaagaggaggatgaggaagaggagaaagaggaggataagAAGAAGGCTTCAGAGGaagtagaagaggaggagaagacaaGAAGGAAAAAtagtaaagagaaagagagaagtgagagTGCTGAGGAGGAGCAGCCCAGCACATCCACCCAGTCCAACCCCAGTCAGAAGAGGAAAGTTCAGAGTCCGACCAACTGTTTTCCTTccaggaagggggagaaagatgACATCTGGACCTGGCCCATCTACAAGACCCAGCTCCCAGTCACCTGTGGGGACAAAGAAGGCATTCTCATCAGGAACAAGCTGGCCAAAGGGGAGAGGTGCATTGTGGTCCAGGGTCGCTGGTTCACCCCAAGTGGCTTTGAGGAGTTTGGGGTGAAGAAGAGCAGAAAGAACTGGAAGTACAGTATCCGCTGTAGAGACACCAATCTGGGAAAACTGATCCAGGAAGGCCATTTAACTTCACCAGACTTTAAAAGAAGAAAGAGTGCACAGGCCAAGAGAGCACGCTTTCCCTTCAACCAATCAGCGGGCTCAAACACAGAATctgaggaggatgatgaggaggaaaAAGAAGCTGagcaggaaagagaggaaggagagagaagagatcagGCAAACACTGCTGGAGAGAGCAGTACAGGAGGCAGCCATTGTGGTGTGAAGAAGTCTGTTTTCAAAGTCACCTGTGGAGCCATCAATGGAATGCTTCATAAGGATCGGTTTGCATCAGGGTCGTGTGGAAAGAGCATCCGTACAGAGCTGCGCTGGATGACCCCGGTGGAGTTTGTGAAGGGGGAGTCAGCTCTGGAAGATCCCTCCTGGAAGAACGACATCCAGTGGGACGGGAAACCACTCAGCCTCCTCATCGAGAGTAAGATCTTGGTCATTCACTCTCTCCTGTGTAAGTGCAAGCTGTGCAGCCCTACAGCCAAAGACAGGCATGATCAGGATAACGATGACGACTGCTTCATCTGTAGAAGCCAGGGTAGCTTGATATGCTGTGATGAGTGTCCTCGCTCCTTCCATCAGAGATGTCATCTTCCTAATGTGGATGACACTATGCTGGGGGATAATCTTCCGTGGGTGTGCACATTTTGTGTACTGAGGGCCAGTCAGCCGTGGCGTTACCCCAGTCAAAAGACTTACCAGGAAGCCTTGACCTGCCGAATCTCTGACCACCTACTGGAATGCCAGTACCTCCTGCTGTGTCTATACCAAGCTGACAAGGACCACATCATTGTGGCAGATCCTTGTATCAATGTGAAAAACTACACCAGTGTGATAAAGACCCCTATATGGCTGGACAGGGTTGTGGAGAAGCTGCAGCAGAATCTCTACCAGTCAGTGCAACACTTTGTGTCTGATGTGTTGCTTATCTTCACCAACTGTGCCACATTTAACAGGGATAATGCAGAGTTCTGTGTGATGGGCGAAAGATTGAAGGATCTATTTGAGAGAGAGTTCAAGAGTACATTCAGCATCCAACTTCAGCATCCAACTGCATCCAACAGCCAGTAGAGCCTTCATCAAGTCTGTACTGTTATCTCACTATGAGACAACAGGGAATATTCACCATGCAATGGTCTTTCTATACAGCCTTCATACAGACATGTACACCAAGTTGTACAGATCTTATTTTCCATGCATGTACATTGTTATCCATCTAGTCCTTTCATGAATTTCTTTCATTTGTTTTAATTCCAATCAAAAtccaattttattagtcacatacacatagttagcaaatgttattgcgagtgtagcgaaatgcttgtgcttctagttccgacaatgcagtaataaccaacgagtaatcta
>TU1247501
TTGAAGTGTACTTCCGTGCTTGCGGGATATctataaaatctttgaaaataaCTTTAATAACAACTTGTTGGCCTACAGTTGAAAACGTTTTCATTACGTCCTCTACGTCCTTCTTCCAAACGCGCGTCTATTGGTATGTGCATTCGTCTGAATGAATCAATCCGCCCGGGGCCTGTATTGAAATGTAAATAGTCCACACAATGTCAATCAAACTTTAATTTTTCAGTGTATATATATGCAACCCAATACGAACAGGATCGTTCATTATTCAACTATTAATAATATTCAGTGACCTGGTAAATACTGGATTTTGTTTCGACAAAGAAAACTGTATTGAAGAGTGGCAGTTGCGTCTGCGCCAATGGATTTTCTGACAGATGAGGAGTTACTGCGGTTTTTCCGCTGTAGTAGGACAGAGATGTCGTGCATGGAGCAACCACACACATTTCTTAACCAGCTCCGAGACCACAACCTCATTCCGGAAGAAATGTACAAGAAGCTGATTCGGATGAGGAGTAAGGAGCTGAGGGAGAAGGGTGTGTACCAGGTGTTGGACTGGGTGGAGGCAGAGAGGCCCAACAGCATCAAGGTGTTCTGGAACTGTGTGTTCAGGGACCACCTCCTGCAGCAGTACCCCACGTTACGCCTGCTCCGAAACCGCCTGCTGGACGGGTCGTTCACATTCTATGAGAAACTGCCAAAGAAggtggagaaggaagaggaggaggaggataaaaAGAAGGCTTCagctgaaggagaagaggaggatgaggaagaggagaaagaggaggataagAAGAAGGCTTCAGAGGaagtagaagaggaggagaagacaaGAAGGAAAAAtagtaaagagaaagagagaagtgagagTGCTGAGGAGGAGCAGCCCAGCACATCCACCCAGTCCAACCCCAGTCAGAAGAGGAAAGTTCAGAGTCCGACCAACTGTTTTCCTTccaggaagggggagaaagatgACATCTGGACCTGGCCCATCTACAAGACCCAGCTCCCAGTCACCTGTGGGGACAAAGAAGGCATTCTCATCAGGAACAAGCTGGCCAAAGG
>TU1247507
GGGTCGTTCACATTCTATGAGAAACTGCCAAAGAAggtggagaaggaagaggaggaggaggataaaaAGAAGGCTTCagctgaaggagaagaggaggatgaggaagaggagaaagaggaggataagAAGAAGGCTTCAGAGGaagtagaagaggaggagaagacaaGAAGGAAAAAtagtaaagagaaagagagaagtgagagTGCTGAGGAGGAGCAGCCCAGCACATCCACCCAGTCCAACCCCAGTCAGAAGAGGAAAGTTCAGAGTCCGACCAACTGTTTTCCTTccaggaagggggagaaagatgACATCTGGACCTGGCCCATCTACAAGACCCAGCTCCCAGTCACCTGTGGGGACAAAGAAGGCATTCTCATCAGGAACAAGCTGGCCAAAGGGGAGAGGTGCATTGTGGTCCAGGGTCGCTGGTTCACCCCAAGTGGCTTTGAGGAGTTTGGGGTGAAGAAGAGCAGAAAGAACTGGAAGTACAGTATCCGCTGTAGAGACACCAATCTGGGAAAACTGATCCAGGTACAGCATATATTTGaattagatttatttgaccattaAAAACACAATTCAACCAGACGTGGATACAATTGATTTAAAAtcatcaaataaaacacagaaaagttGAACAGCTTGGTCACTTTTCATACTCTAATCAGGCCTATGTTATTTGGACAATGTTGCCATACACTACTACACTCTGGGATATATATATAGGTCTATATCATATACAATATCATATAGGGGAgactggggttggttgtcacacttTTTACTCTCGTGTGTATTTCTCAGCACCAGCATATTTTACAAGACTTTTCAATATTAGGAGAAACACCAAGGTCGGGTTGAAATGGGGACCCTTTTTAGCCTCATCTTATTCCAACACGGAGACactgtaagacctttaaacaggttaatatTCACAAGGTTGCAGGGCCGGACAGTTTACCAGGACGCATACTCAGAAAATGCACTAACCAGCTGGAAAGTGTGTTCACATACATATTTTTTTGGAACTCCGGATGTCAACTTACTTTTGAAAGGTGAAACTTAGACATTGGGCTgtgcatcatcagtttt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036938065.1 False 2588 mRNA 0.47 15 63888086 63908673
TU1247501 False 1071 TUCP 0.47 4 63888096 63890557
TU1247507 True 1095 lncRNA 0.44 3 63890004 63892888

Neighbor

gene id symbol gene type direction distance location
trnas-uga-37 NA coding upstream 9399 63878606 ~ 63878687 (+)
trnas-uga-36 NA coding upstream 10021 63877984 ~ 63878065 (+)
trnas-uga-35 NA coding upstream 10323 63877682 ~ 63877763 (+)
trnas-uga-34 NA coding upstream 10949 63877056 ~ 63877137 (+)
trnas-cga-19 NA coding upstream 11244 63876761 ~ 63876842 (+)
baiap2l2a LOC106600898 coding downstream 234182 64142855 ~ 64172178 (+)
LOC110538012 LOC106600897 coding downstream 323466 64232139 ~ 64242953 (+)
si:dkey-110g7.8 LOC106600891 coding downstream 461285 64369958 ~ 64376356 (+)
LOC110538020 LOC106600890 coding downstream 498700 64407373 ~ 64416073 (+)
LOC110538022 LOC106600886 coding downstream 521832 64430505 ~ 64438581 (+)
G1096923 NA non-coding upstream 19148 63836168 ~ 63868938 (+)
trnas-cga-3 NA non-coding upstream 43506 63843513 ~ 63844652 (+)
G1096924 NA non-coding upstream 44582 63838009 ~ 63843504 (+)
G1096926 NA non-coding upstream 48672 63838767 ~ 63839414 (+)
G1096816 NA non-coding upstream 226224 63659061 ~ 63661862 (+)
G1096949 NA non-coding downstream 4452 63913125 ~ 63920933 (+)
G1096952 NA non-coding downstream 21385 63930058 ~ 63933836 (+)
G1096968 NA non-coding downstream 58511 63967184 ~ 63969690 (+)
G1096974 NA non-coding downstream 97842 64006515 ~ 64006901 (+)
G1096992 NA non-coding downstream 115733 64024406 ~ 64024858 (+)
LOC100305204 hebp2 other upstream 553392 63302491 ~ 63334694 (+)
LOC118937701 LOC100136295 other upstream 1440612 62441706 ~ 62448515 (+)
G1095540 NA other upstream 2535741 61037739 ~ 61352345 (+)
mmp25a LOC106600705 other upstream 2922491 60931123 ~ 60965921 (+)
G1095209 NA other upstream 3069189 60816491 ~ 60818897 (+)
G1097063 NA other downstream 227685 64136358 ~ 64136704 (+)
G1097116 NA other downstream 319328 64228001 ~ 64228684 (+)
G1097122 NA other downstream 345939 64254612 ~ 64255064 (+)
G1100432 NA other downstream 1524467 65433140 ~ 65433457 (+)

Expression


Co-expression Network