LOC110538012 (LOC106600897)


Basic Information

Item Value
gene id LOC110538012
gene name LOC106600897
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 64232139 ~ 64242953 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021624535.2
gagagtgagtgagtaagaCTTTTTGTATCTGAGCCATTTTTCTCTGAACTCTGACAGGTATAGCAGTCAGTCCACATAATGCGGGCCCAGGATGGTCTAGATCTAGAAGGTTAATTACTGAGACCCACCTGCTGAACCTTACCCATGTTCTTCTGCTCCAGGGGACCTGTCCTCCTGCGCTCCCCGGGAAACATGCTCCTCTTCTGGATGTCTTGTGGATCACTTCTCCCTCTCCTGGTCCTTTGCAATAATGGACAAGAATGCTGCACCATCCAGGACAACACACAATATCATGTGTCCCCTGTGCTTGAGTCCCTGCAGTGCTACAATGACTACAGATCCTACGTCCGCTGTAGCTGGGAGGAGAGTCCACACCCGTCCTCACAGCCGTTAACCCTATACTACTGGGACAGCCCTGAGAACCGTGAGTCCTTGTGTAACCCCTATGGTCAGCGAGCACGGAATCCCAACAACATCAAGCTCACTGCCCAGTGTCAGTACAACACTAAATACTTTGGCATCAATACCAACCATGTCTTCTTCTTCAATACCTCCTGTCCCCCTGCCCTGCTTCTGTCTAAGAATGTGAGGGTGCGTACACCAGTCCACCTATCACAGCAGCGTGTAGAGAGAGGGGGCCGTTTGCTCAGCTGGGAAAGCCCCTACCCCCCATCATCCCTCTTGACCCCCACTCTCAACTACCAGGTCAACTACAGGAGGTCTAACCAGGATGACTGGACAGCAGTGGAGGTTCAGGACACCCAGCTGAGTGTGAAGGCTGAGGCTCAGGTGCCCGGCTTCCAGTATGAAGCCAAGGTGAGGGCAAGGAGGAAGACGGGACTGTGGAGCGAGTGGAGCCCCCTAGTGACCTGGTTGACTGAGGAGGaCCCTGTGCCAGGCCCCTCCAATGCGCAGTGTGTGTTGGATAATGAGACTGCGGTGACATGCAGTTGGGAGGTGAAGAGAGACCTGGCTCAGTTCCTTACCTTCCACCTGTCCtgcaaacacaaccacactgcaCCAGCCCAGAAATGCTGTGATAACACCATGGTCAGCGTTCCATCCAGGGGTCCAGTGCTCGAATACAGCTGCTCCTTCCATGTCCAAGACTTAGAGCAGCTAGAGGTGGAGCTTGTACCCACACGCAACAGCAAAATGTTTAAAACACACAAGAACATTCGTCCAAACCGTCCACTCAAAGtgcagatagaagagagagatgggaactGGATTCTAAAATGGAATCCGCCTCATTTTTATCTGACCGATCATGTGTACTATCAGGTGCAATACTGGAGTAATGAGACTCAGGAGGATATTACGTTCCTCAATGTCTCCCAGGGGTCCCACTcgctctccatcctgggggtgtCCCTGCGCCCCTCTGAGTGCTACCTGGTTAAGGTGAGAGCCCTGGTGGTCCCGGGAAAGCGTGATACTTTTGACGGAGCCCCCTCAGAATGGACCGACCCAGTGGAGTGGACCACACAACCAGCTTCCTGGTCCATCACCACCTTCCTCTACGTCTTCATCAGTATACTGGTGGCCATTGTCTTCATCGCTCTCTATGTTACCATACCAGCCTGTCACAGGAGGGTAGTCCTGTGGGAGGTGTCTGTCCCGTCACCCCTCAAGAGCAAGGTACTGGGAGAGGTCATTAAGAAATCTCCTGATAGGTTGTTATTCCATGAGAGTGAGAGAAGTGAGAAGACCTACATCTGCAGGGTACAGAcacaggggagcagggaggaaagCAGTCTCTGCTCCAGCTGCTCTTCAGATAGTCCATTGTGGTTGAACTCAGATGTAAAAGCACATGGACTGTTCCATTCCATTACCAAGGAGGGGTGGAAGAAGTATGACCCaaactcttcctccctccatttgCTGTCAGTGGACAGATCTGGCCCTCCTGCTCTAGACTCATCCGGCTTCAGCTTCAGTGGCCCTTACATCTTCTGTGGCGACAGTTCACCGGCGCCGAGTGAGTTTCTGAGTCTGGAGCCTCCCTGTGAGGAGTTCGACAACACTCTCTCTAACTCTGAACCCACTTCTCCGTCCTCCTCGGAGAGGTCTGCCCCATCCCTCTCAGAGTCGAGTGAGGGCTACGTGGCGATGCCTCAGGTCTGTGCTGGCCTGTCCAGATCAACAGAGGGAGTGTCTGATGGTGTTACGAGCGCTGTAGTAGCGGACGACAGTAAGAACACTGGTAACAACAACGGCAACAACGACATCATGGCATGGCCCAAGTCAGAGCTCCTCCCACCCGGACCTAGCTCTATGCCCACCTGCTCACCACCCAGTGAGAATGAAGACCCTCCTCCAGCGTACACACCcccaaccaccacaaccacccctcCCACCTTGCCCCCAGTGGGCCCTACCCTACACACCTCTGGGTACTGCTTCCTCCCGGCCCTACAGGCACTTGGGGGCTGGGGCCATGTGCAGTCTTCTGGACCACCTAAAGGAGGCAGTGAAGAGCAGCAGGTCTGTAGGAGGGAGATGAGGCAGGAGGAGCAGTGCAAGGAGGATCCATATGTCAGACTGTCCCAGCTAGCcatttagctaactagctaacctcATCTAATGCAGGACTACATGAGGGACTACATGAGGGTCACTGTTCTCAATATTTGATCCATTCTAACACTAACACACCTGTCTCAACTAATCACAAGAGCTTGATTATTAGTTGGACTAGTTCattcaggtgtgttagtgttggAATGGACCACATGTGTAAAACTACTGATTTGTGGTCACTGAAGACTGGGTTGAGATTGAGAAACACTTCTATTTCTGGGAGGGAAAACTGTTGGAGCCTCATAGAGAAGCCTCCCTTGATTACTCACAATGCCCAGCAGATGGCATTACTGTACTTACTGTGTATCTGTTGAACTCACAAGAGGTGGCCTATGGATTCTACTGTAAGGACTAACTACAAACACAGAAGCATACTGCAGTAAGCCATTCCTCTCTGGGTGGTAAGGTGACTGAGGGCCAGATTACCAGGTTTCCACCACATCACATAGATGGTACATGTGTAACAGGGTGGCACTGTTGAGTTGGTGAACGCAGCCTTATGCCTCTGTCAGTGCCAGTGGCTGTTCCTGTCGTTCCACAGCAGGGGTTGGCCCGCGGGCCGCAAAGTGCTGTGTTACAGAATGCGAATGGTGATGACGGTCTCCTGGTCGAATGTCATTCGTCACAAGCTTTgtaaacaactggtgtagacttacagtgaaatgtttaattatgggcccttcccaacaatgcagagagaaaaatatagagaaaaataataacacaaggaataaatccacaatggtt

Function

NR:

description
interleukin-3 receptor class 2 subunit beta-like

GO: NA

KEGG:

id description
K04738 CSF2RB, IL3RB, CD131; cytokine receptor common subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021624535.2 True 3333 mRNA 0.52 13 64232139 64242953

Neighbor

gene id symbol gene type direction distance location
baiap2l2a LOC106600898 coding upstream 59961 64142855 ~ 64172178 (+)
LOC110538933 LOC106600901 coding upstream 323466 63888086 ~ 63908673 (+)
trnas-uga-37 NA coding upstream 353452 63878606 ~ 63878687 (+)
trnas-uga-36 NA coding upstream 354074 63877984 ~ 63878065 (+)
trnas-uga-35 NA coding upstream 354376 63877682 ~ 63877763 (+)
si:dkey-110g7.8 LOC106600891 coding downstream 127005 64369958 ~ 64376356 (+)
LOC110538020 LOC106600890 coding downstream 164420 64407373 ~ 64416073 (+)
LOC110538022 LOC106600886 coding downstream 187552 64430505 ~ 64438581 (+)
LOC110538024 LOC106600885 coding downstream 200807 64443760 ~ 64445157 (+)
LOC110538023 LOC106600884 coding downstream 216344 64459297 ~ 64461117 (+)
G1097117 NA non-coding upstream 2896 64228770 ~ 64229243 (+)
G1097115 NA non-coding upstream 4952 64226987 ~ 64227187 (+)
G1097113 NA non-coding upstream 8169 64223679 ~ 64223970 (+)
G1097111 NA non-coding upstream 11499 64220250 ~ 64220640 (+)
G1097047 NA non-coding upstream 62493 64166275 ~ 64169646 (+)
G1097055 NA non-coding downstream 258 64243211 ~ 64243564 (+)
G1097052 NA non-coding downstream 1591 64244544 ~ 64245781 (+)
G1097121 NA non-coding downstream 10244 64253197 ~ 64253474 (+)
G1097126 NA non-coding downstream 21539 64264492 ~ 64264703 (+)
G1097128 NA non-coding downstream 23862 64266815 ~ 64267253 (+)
G1097116 NA other upstream 3455 64228001 ~ 64228684 (+)
G1097063 NA other upstream 95435 64136358 ~ 64136704 (+)
LOC100305204 hebp2 other upstream 897445 63302491 ~ 63334694 (+)
LOC118937701 LOC100136295 other upstream 1784665 62441706 ~ 62448515 (+)
G1097122 NA other downstream 11659 64254612 ~ 64255064 (+)
G1100432 NA other downstream 1190187 65433140 ~ 65433457 (+)
LOC110538063 abi1 other downstream 1906256 66148710 ~ 66168256 (+)
LOC110538072 psd3 other downstream 2419011 66661875 ~ 66670815 (+)

Expression


Co-expression Network