LOC110538020 (LOC106600890)


Basic Information

Item Value
gene id LOC110538020
gene name LOC106600890
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 64407373 ~ 64416073 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021624548.2
ATGACCCGTGCTATCCGCGATTCCCCACAATCGGTACCCAAAgtggtgcacgttttgttttttgccctagaactacacacctgatttaaaTAATCACCAATCTTTTATAATTTCAATCAACTGTGTAGTgttaaagaaagaaaaaaaggtgCATTCTAGACGTCCAAATGATACCTGCTTGCAGTGACCAATTTAAAACGATGGACTTTATTCAAGCCAATAAGACCGTCTAATGTATGTGCTCTCTCCAATCAGGATTGGACCGAGTGAAGAAAAGCGAGTGTGTACGGAAACGACCGAAACGCATACTGATATAACTGGGTTTAGTGCGTAGATTTGATAGTGCTCGGTCTTCTGTGGACGGACAGTTTGGCCAGCCAAGATTGTCTAAAGTGAAAGAAAAAACAACTGGATGATGAGTTATCGAAGACAGAATATGAAGTGTCTTAAAATATTGTCTATAACCGTCGCGCTGTTGATAGCGCACAGCGCTGCTATTATAAGAATTCCCCTCCACAAGACGCGCAGTATGCGCCGCCTAATGAACGACAATGGGATGAGTTTTGAACAACTCCAGGACATGGCCAAGACCGTTGGTGGTGCAGGAGCTGACACACCAACACCCTTACCAGCAACCACTCAGAGCCCGAAAGTGCCAGTTGAGAGACTCACTAACTTCATGGATGCTCAGTACTATGGGGTGATCAGCATAGGCACACCACCCCAGGACTTTACTGTGCTGTTTGACACTGGCTCCTCCAACCTGTGGGTGCCCTCCATTCACTGCTCCTTCCTGGATGTTGCATGCTGGCTCCACCATCGTTATAACTCCAAGAAGTCGAGCACGTACGTTCAGAATGGCACCAAATTCTCCATCCAGTATGGCAGAGGCAGCTTGTCTGGGTTCATCAGTGGGGACACTGTCTTTtTGGCGGGCATGCAGGTCACTGGTCAACAGTTTGGTGAGGCCGTGAAGCAACCTGGCATCACGTTTGCAGTGGCACGCTTTGACGGGGTGCTGGGCATGGGCTACCCTACCATATCTGTCAACAAGATAACCCCTGTGTTTGACACCGCCATGGCTGCCAAGCTGTTGCCTCAGAACATATTTTCCTTCTATATTAGCAGGGAGCCATTTGCTGCTGTAGGAGGAGAGCTGATGCTGGGAGGCACGGACCCACTGTACTACACTGGAGACCTTCACTATGTCAATGTCACACGCAAGGCCTATTGGCAGATTGAGATGAGCAGTGTGGAAGTGGGAAACCAGCTGACGTTGTGCAAGGCCGGTTGCCAGGCGATTGTTGATACGGGAACGTCCCTCATCACTGGGCCTGCGGAGGAGGTCCGGGCGCTGCAAAAAGCCATCGGAGCCTTGCCTCTACTGATGGGAGAGTATTGGATTGACTGCAAGAAGGTTTCCTCTCTCCCCATCATCACATTCAACCTGGGAGGGAAGATGTTTAACTTGACTGGAGACGACTATATCATAATGGAGTCCCAGATGGGTCAGAAAATCTGTCTGTCAGGCTTCATGGCCATGAACATCCCTCCTCCGGCTGGACCCCTGTGGATCCTGGGAGATGTGTTCATTGGACGCTACTACAGCGTGTTTGATAGAGATGCAGACCGCGTGGGGTTCGCCCCTGCCAAGTAGAGGGGAGAAACCACAAACAACCCCTAgccacttgtggagatctgaaaGGATTTGATGGGTATAAGCAATATAGTGGTCCTACCAAACCAAGGTGCAAGGTCTACCTATCAAATCCCCACAGATCATGCTGAATTATAGGAGGAAAAGCACACCACAAATGAACAAAACTCCCAAAAAGAACCTTGTCTTTGCCTATTTTgcttttgggggggagggggctggctatgtttttttttttgtttttttttttaagtgttaccATGTGAGTTTGGTGAATGATTAATAAATATTGCAGATCAAAACTGATATGAGCTGCTGTATGCAGTTCAGCTTGGTGTTTTGTATGAAGACAAAGTGGTACTGTTGTATCGCCTATCTGACAATGCAACCACTTGTTTTTGGAAAGCAGAAGACTGAATTCATATCATTGTAGATTAAACTCGGTTTTTGTTAAATCAACCATAATGTTGATGTCAGTTGATGTCAGAAATTGTATCAAACTTTTTTTGTGAAACAATGTCTTGTACACTTGAACTCTTATTGTATGTTGACCCCAAGACCATGACGCTTCCGTTATAGCCTAAATAAAATGGTC

Function

NR:

description
cathepsin D-like

GO: NA

KEGG:

id description
K08245 E3.4.23.40; phytepsin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021624548.2 True 2252 mRNA 0.46 9 64407373 64416073

Neighbor

gene id symbol gene type direction distance location
si:dkey-110g7.8 LOC106600891 coding upstream 31017 64369958 ~ 64376356 (+)
LOC110538012 LOC106600897 coding upstream 164420 64232139 ~ 64242953 (+)
baiap2l2a LOC106600898 coding upstream 235195 64142855 ~ 64172178 (+)
LOC110538933 LOC106600901 coding upstream 498700 63888086 ~ 63908673 (+)
trnas-uga-37 NA coding upstream 528686 63878606 ~ 63878687 (+)
LOC110538022 LOC106600886 coding downstream 14432 64430505 ~ 64438581 (+)
LOC110538024 LOC106600885 coding downstream 27687 64443760 ~ 64445157 (+)
LOC110538023 LOC106600884 coding downstream 43224 64459297 ~ 64461117 (+)
LOC110538025 LOC105029658 coding downstream 54043 64470116 ~ 64475411 (+)
LOC110539154 tex33 coding downstream 59639 64475712 ~ 64478125 (+)
G1099241 NA non-coding upstream 28862 64378311 ~ 64378511 (+)
G1099187 LOC106600892 non-coding upstream 47511 64349651 ~ 64359862 (+)
G1099213 NA non-coding upstream 69901 64337217 ~ 64337472 (+)
G1099203 NA non-coding upstream 83148 64324006 ~ 64324225 (+)
G1099197 NA non-coding upstream 92972 64314166 ~ 64314401 (+)
G1099258 LOC106600887 non-coding downstream 9572 64425645 ~ 64426722 (+)
G1099280 LOC105030512 non-coding downstream 46321 64462394 ~ 64462760 (+)
G1099325 LOC106600973 non-coding downstream 128435 64544508 ~ 64548249 (+)
G1099336 NA non-coding downstream 144576 64560649 ~ 64566188 (+)
G1099326 LOC106600880 non-coding downstream 172906 64588979 ~ 64613235 (+)
G1097122 NA other upstream 152309 64254612 ~ 64255064 (+)
G1097116 NA other upstream 178689 64228001 ~ 64228684 (+)
G1097063 NA other upstream 270669 64136358 ~ 64136704 (+)
G1100432 NA other downstream 1017067 65433140 ~ 65433457 (+)
LOC110538063 abi1 other downstream 1733136 66148710 ~ 66168256 (+)
LOC110538072 psd3 other downstream 2245891 66661875 ~ 66670815 (+)
G1101805 NA other downstream 2308588 66724661 ~ 66822261 (+)
G1102021 NA other downstream 2642662 67058735 ~ 67059407 (+)

Expression


Co-expression Network