LOC110538023 (LOC106600884)


Basic Information

Item Value
gene id LOC110538023
gene name LOC106600884
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 64459297 ~ 64461117 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021624556.2
GTCGTCATTATCCGGATTTTGATTAGGACCTGGCAACCTTGATTCAGAGTCCAAGATAAGGATAATCATGGCGGCGCAAACCCGGGCGCTTGTTTCAGCCAAATGGCTTGCAGATGCGATAAAAAGCAACCTTATTGGACCGAATCTTCGAATTCTGGATACGTCCTGGTATCTAGCGAAATTAAAACGCGATGCAAATGCGGAATTTAACCAACAGCACATACCTGGAACTTCGTTCTTTGATATTGACAAATGCTCTGACAAAACTTCCTCGATGGACCATATGCTCCCAACTGCAAACTACTTTGCAGAGTATGTGGGTGGTTTAGGTATAGGAAACGATACACATGTAGTAGTGTACGATACCAGCGATTTTGGGTCATACAGCGCACCCCGAGTGTGGTGGATGTTCCGATTATTTGGGCACAATTCTGTATCGGTCCTGGACGGGGGTATGAAGAATTGGCTGGCCGAAGGGCATCCGGTCACTGCAGAATACACCAAACCAGGACGTGCGGACTTCAAGGCGACCGCCAATCATTCTTGGGTCAAGTCGTATGAAGATGTGCTGAAAAACATCGAGACGAAACAGGTGCAAGTGATTGACGCAAGATCCGCCGGCAGGTTCCGGGGAACCGAACCAGAACCAAGAGATGacattgaGCCTGGCCACATTCCTGGTACTATCAACATGCCTTTTGCCAAGTTCATGGATGCCTCAGGCAAGGAGTTGGAGCTTGAAGTGCTGGCAAAAATGTTCCGAGAGGCAGGGGTGGACTTGGAGAAACCTTTCTGGGTAACCTGTGGGTCAGGGGTCACTGCATGCCACGTGGTTCTGGCTGCTCACCTGCTGGGACATTCAGGGTCAGTGTCTGTGTATGACGGGTCATGGTCTGAATGGTTCAAAAGGGCTGCCCCGGAGCATGTCATCTCTGAGGGCAAGGGGAAGCAAGTGTGATGTGGAGAGACGAGTAGAGATGAGCATTAAGGAAAATACTGTTGAATGAGTTGCTGATTAAAAGCAGGGAGGGGACACTATGAATCACAAAGGAAGCTACAGATTGCACAAAATATGGAGGTTTTTACTGATTTTGACTGAAGATTTTTGCTGAGTTGGACAAATGTGTTATTGCGAAAGAGGTCACCGTTCAAGAGTCCATGAATACAGAATGCCTATGTTTATATTCAAGATGTCCAATAAAGGTGTTACAAACTATGCTATTTTAATCTATTAATAAAGATTAGAAGGATGGAATGTTTGAGGTATTTGGATTAGAATTGGACTATGGTTGAGTTGTATGCTCCTACTTAGGGGATTGCAGCCTGGCAACATTGTCTTGTAGATGTTGCCACTACCAGACATTTTGTAAGGGGCTTTTAAAATAATGAAACTTGCTCTTAATGCACCATGAAAATGTAAAGAACATGTAATTTTCATGTAGTTGTAGTTGCCTTGGTGTGACCTTGTTATGAGATGTAGGCTCACGAAATGTCAAGGGGTTTTTCTAAGTGCAGTTCGGTTTTAGTATTAACAGAATTTTCTGTCAGTTTGATTGCAGGATGCCACTTTGTTTAATTTGTACAATAAAAATATGCCATCTACTGTACAAA

Function

NR:

description
3-mercaptopyruvate sulfurtransferase-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0004792 thiosulfate sulfurtransferase activity molecular_function

KEGG:

id description
K01011 TST, MPST, sseA; thiosulfate/3-mercaptopyruvate sulfurtransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021624556.2 True 1611 mRNA 0.44 2 64459297 64461117

Neighbor

gene id symbol gene type direction distance location
LOC110538024 LOC106600885 coding upstream 14140 64443760 ~ 64445157 (+)
LOC110538022 LOC106600886 coding upstream 20716 64430505 ~ 64438581 (+)
LOC110538020 LOC106600890 coding upstream 43224 64407373 ~ 64416073 (+)
si:dkey-110g7.8 LOC106600891 coding upstream 82941 64369958 ~ 64376356 (+)
LOC110538012 LOC106600897 coding upstream 216344 64232139 ~ 64242953 (+)
LOC110538025 LOC105029658 coding downstream 8999 64470116 ~ 64475411 (+)
LOC110539154 tex33 coding downstream 14595 64475712 ~ 64478125 (+)
il2rb il2rb1 coding downstream 23961 64485078 ~ 64490661 (+)
c1qtnf6a c1qtnf6 coding downstream 61721 64522838 ~ 64537399 (+)
crhr1 LOC106600876 coding downstream 489914 64951031 ~ 65117379 (+)
G1099258 LOC106600887 non-coding upstream 32575 64425645 ~ 64426722 (+)
G1099241 NA non-coding upstream 80786 64378311 ~ 64378511 (+)
G1099187 LOC106600892 non-coding upstream 99435 64349651 ~ 64359862 (+)
G1099213 NA non-coding upstream 121825 64337217 ~ 64337472 (+)
G1099203 NA non-coding upstream 135072 64324006 ~ 64324225 (+)
G1099280 LOC105030512 non-coding downstream 1277 64462394 ~ 64462760 (+)
G1099325 LOC106600973 non-coding downstream 83391 64544508 ~ 64548249 (+)
G1099336 NA non-coding downstream 99532 64560649 ~ 64566188 (+)
G1099326 LOC106600880 non-coding downstream 127862 64588979 ~ 64613235 (+)
G1099365 NA non-coding downstream 153536 64614653 ~ 64614954 (+)
G1097122 NA other upstream 204233 64254612 ~ 64255064 (+)
G1097116 NA other upstream 230613 64228001 ~ 64228684 (+)
G1097063 NA other upstream 322593 64136358 ~ 64136704 (+)
LOC110538933 LOC106600901 other upstream 568740 63888086 ~ 63908673 (+)
G1100432 NA other downstream 972023 65433140 ~ 65433457 (+)
LOC110538063 abi1 other downstream 1688092 66148710 ~ 66168256 (+)
LOC110538072 psd3 other downstream 2200847 66661875 ~ 66670815 (+)
G1101805 NA other downstream 2263544 66724661 ~ 66822261 (+)
G1102021 NA other downstream 2597618 67058735 ~ 67059407 (+)

Expression


Co-expression Network