LOC110538025 (LOC105029658)


Basic Information

Item Value
gene id LOC110538025
gene name LOC105029658
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 64470116 ~ 64475411 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021624559.2
CACACCAAAGATGGCCGAAAAGAATGTCCATCAAAGGTGCCCTGCGAAGTGCCTGTGGGTTATGTCGAGATAAACAAATTGAGGTCCTCTTATCTTTAGCGAGCTAACTAGCTGAATGCTACCGTTCAGGTATTCGCATATGCGGTAACAGGACTGTGTTAATGAGTAGAAATGTCTGGTATCGCTCTTAGTAGACTGTCACAGGAGCGCAAAGCATGGAGGAAAGACCACCCATTTggtTTTGTTGCTGTGCCTACCAAAAATCCTGATGGCACTATGAACCTTATGAACTGGGAATGCGCCATTCCAGGGAAGAAGGGGACACTGTGGGAGGGAGGCCAATACAAACTCAGAATGCTGTTCAAAGATGACTATCCTTCCTCGCCGCCAAAATGCAAGTTTGAGCCGCCCATTTTCCACCCCAATGTCTACCCATCTGGCACGGTGTGTCTTTCCAtcctggaggaggagaaggactgGAGGCCAGCCATCACCATCAAgcagATCCTGTTGGGTATCCAAGAGCTACTCAATGAACCCAACATCCAAGACCCAGCACAAGCAGAAGCCTACACAATTTACTGTCAGAACAGAATGGACTATGAGAAGAGGGTGAGGGCGCAGGCCAAGAAGTTTGCCCCCACATAAAGCTCAGCCTGAGAAGCCTGATACAACACCTGGGTACTGAACAGCAAGCAGCACTTAGAGGACCAATCCAATGATCAATCTACAATTTGATATGTTCTTCTTCACATGAGAAAAATGTAATGTACTCTACATGAGAGCcattttaaaacaaaacaaaaaattatTCTTTTTGTCCAAATTTCTTTTTGCCTAGTTCACTTCTAAAGCATGCTTAAATCACATGCCTAAAACGCCATTTGCATTTGTGATCTGTAAATCAGGAAGCTACTTTTCCTGATATTTAGTCTTATCAAATATCACTTATTTAATAACAAATCATTTCGAATTGTAGTGTCTGATGCATCATTTTGAAACAATCTGTACTTAAATAAATTAGCCCCCAAAATGCAGACAGAAAATCAATAAGTGAGCCTTATTTTTTGAAATGTCTGATCACATTGAATTTAATTGTAGATTTTTATTGGGATGTCTCTTTAATAAGATGGATGTCAGTGGTGAGAGTGTGCTGCATAGAGAGCTGAAGAGGTTTACCTCCAAAGACTTGAGTGTATGTacataatataaatatgtagGTCCATATGGATCTTATGTTTTTTTCTATTGTTTTAGCAAGTTGATATTTGTGTGTGGTATTAAAGTAATgaacacattttaaatgtaaGAATTGTGAAATAAAGTTAATTGAATGGGAAATACAAAA
>XM_021624560.2
AGGTAAGGAAATCTCTCAATCTATCGATTTATGTCAGGGGAAATAACTTGGTCAAATTATTAGCACGAAAGTATCGTCATTAGTAAGCAGCTTTAGCTAGTTTTGATAGTAAAAAGAAATAGGCGACGCAGCTCATTGTTTTTAGCCACCCcctagctaatttagctagctaacgttagcaagcacCAACAAGCGAACGCCATCTAGACAGTATCACTTGAATTGTAAGGACTGTGTTAATGAGTAGAAATGTCTGGTATCGCTCTTAGTAGACTGTCACAGGAGCGCAAAGCATGGAGGAAAGACCACCCATTTggtTTTGTTGCTGTGCCTACCAAAAATCCTGATGGCACTATGAACCTTATGAACTGGGAATGCGCCATTCCAGGGAAGAAGGGGACACTGTGGGAGGGAGGCCAATACAAACTCAGAATGCTGTTCAAAGATGACTATCCTTCCTCGCCGCCAAAATGCAAGTTTGAGCCGCCCATTTTCCACCCCAATGTCTACCCATCTGGCACGGTGTGTCTTTCCAtcctggaggaggagaaggactgGAGGCCAGCCATCACCATCAAgcagATCCTGTTGGGTATCCAAGAGCTACTCAATGAACCCAACATCCAAGACCCAGCACAAGCAGAAGCCTACACAATTTACTGTCAGAACAGAATGGACTATGAGAAGAGGGTGAGGGCGCAGGCCAAGAAGTTTGCCCCCACATAAAGCTCAGCCTGAGAAGCCTGATACAACACCTGGGTACTGAACAGCAAGCAGCACTTAGAGGACCAATCCAATGATCAATCTACAATTTGATATGTTCTTCTTCACATGAGAAAAATGTAATGTACTCTACATGAGAGCcattttaaaacaaaacaaaaaattatTCTTTTTGTCCAAATTTCTTTTTGCCTAGTTCACTTCTAAAGCATGCTTAAATCACATGCCTAAAACGCCATTTGCATTTGTGATCTGTAAATCAGGAAGCTACTTTTCCTGATATTTAGTCTTATCAAATATCACTTATTTAATAACAAATCATTTCGAATTGTAGTGTCTGATGCATCATTTTGAAACAATCTGTACTTAAATAAATTAGCCCCCAAAATGCAGACAGAAAATCAATAAGTGAGCCTTATTTTTTGAAATGTCTGATCACATTGAATTTAATTGTAGATTTTTATTGGGATGTCTCTTTAATAAGATGGATGTCAGTGGTGAGAGTGTGCTGCATAGAGAGCTGAAGAGGTTTACCTCCAAAGACTTGAGTGTATGTacataatataaatatgtagGTCCATATGGATCTTATGTTTTTTTCTATTGTTTTAGCAAGTTGATATTTGTGTGTGGTATTAAAGTAATgaacacattttaaatgtaaGAATTGTGAAATAAAGTTAATTGAATGGGAAATACAAAA

Function

NR:

description
PREDICTED: SUMO-conjugating enzyme UBC9

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0019789 SUMO transferase activity molecular_function

KEGG:

id description
K10577 UBE2I, UBC9; ubiquitin-conjugating enzyme E2 I

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021624559.2 False 1348 mRNA 0.40 7 64470116 64475411
XM_021624560.2 True 1426 mRNA 0.39 7 64470265 64475411

Neighbor

gene id symbol gene type direction distance location
LOC110538023 LOC106600884 coding upstream 8999 64459297 ~ 64461117 (+)
LOC110538024 LOC106600885 coding upstream 24959 64443760 ~ 64445157 (+)
LOC110538022 LOC106600886 coding upstream 31535 64430505 ~ 64438581 (+)
LOC110538020 LOC106600890 coding upstream 54043 64407373 ~ 64416073 (+)
si:dkey-110g7.8 LOC106600891 coding upstream 93760 64369958 ~ 64376356 (+)
LOC110539154 tex33 coding downstream 301 64475712 ~ 64478125 (+)
il2rb il2rb1 coding downstream 9667 64485078 ~ 64490661 (+)
c1qtnf6a c1qtnf6 coding downstream 47427 64522838 ~ 64537399 (+)
crhr1 LOC106600876 coding downstream 475620 64951031 ~ 65117379 (+)
cdc27 LOC106600875 coding downstream 775043 65250454 ~ 65283926 (+)
G1099280 LOC105030512 non-coding upstream 7356 64462394 ~ 64462760 (+)
G1099258 LOC106600887 non-coding upstream 43394 64425645 ~ 64426722 (+)
G1099241 NA non-coding upstream 91605 64378311 ~ 64378511 (+)
G1099187 LOC106600892 non-coding upstream 110254 64349651 ~ 64359862 (+)
G1099213 NA non-coding upstream 132644 64337217 ~ 64337472 (+)
G1099325 LOC106600973 non-coding downstream 69097 64544508 ~ 64548249 (+)
G1099336 NA non-coding downstream 85238 64560649 ~ 64566188 (+)
G1099326 LOC106600880 non-coding downstream 113568 64588979 ~ 64613235 (+)
G1099365 NA non-coding downstream 139242 64614653 ~ 64614954 (+)
G1099377 NA non-coding downstream 160797 64636208 ~ 64652489 (+)
G1097122 NA other upstream 215052 64254612 ~ 64255064 (+)
G1097116 NA other upstream 241432 64228001 ~ 64228684 (+)
G1097063 NA other upstream 333412 64136358 ~ 64136704 (+)
LOC110538933 LOC106600901 other upstream 579559 63888086 ~ 63908673 (+)
G1100432 NA other downstream 957729 65433140 ~ 65433457 (+)
LOC110538063 abi1 other downstream 1673798 66148710 ~ 66168256 (+)
LOC110538072 psd3 other downstream 2186553 66661875 ~ 66670815 (+)
G1101805 NA other downstream 2249250 66724661 ~ 66822261 (+)
G1102021 NA other downstream 2583324 67058735 ~ 67059407 (+)

Expression


Co-expression Network