c1qtnf6a (c1qtnf6)


Basic Information

Item Value
gene id c1qtnf6a
gene name c1qtnf6
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 64522838 ~ 64537399 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021624561.2
ctcccctctctctctcctttctctctcctctctctcctcagctgaTCAACACCACTTGAAGAGACTTCTACAAGAGGTGCAGCAACCATGTttgaccacctcctcctcctgagccccatcctcctgttcctccctctggTCATCACTGTCCCGTCCCCCGGAGGTGCCCCTCCTACCCCCTGCCGCCGCTGCTGTGACGACCTGGAGCTACAGAAAGGCCCCCCAGCCCCTCAGACGGGGGACCAAAAGAGTGGCCTGAACCAGATGCCTGAAGTCCGCACCTACATCAACATGACTATCCTCAAAGGGGACAAGGGAAACCGCGGGGACAGGGGTACGCCTGGGAAATCTGGTGAGGAAGGCGCTACTGGATCCCGAGGGCCAATGGGCCCCAAAGGAACCAAGGGCCAGGTGGGCCCCCCAGGGGACCCCTGCAAGACCCAGGAAGCAGCCTTCTCAGTGGGGCGTCGCAAGTCCCTCCACAGCGTGGACTACTACCAGGCCCTGGTGTTCGACACAGAGTTCGTCAACCTCCATGGCCACTTCGACATGTTCAAAGGAAAGTTCAACTGCTATGTCCCTGGGATCTACTTCTTCAATGTCAACATCCACACCTGGAACTTTAAGGAGACCTACCTGCACATAATGAGGAATGACAAGGAGCAGGCCATCGTGTACGCCCAGCCCAGCGAGAGGTCCATCATGCAGAGCCAGAGCCTTATGTTGCCCCTTGAGCTCAATGACGAGGTGTGGGTCCGGCTGtacaagagggagagggagaacgcTGTGTATAGTGACGATGTGGATGTCTACATCACCTTCAACGGATACCTCATCAAGCCCACCCTGGAGTGAGATGACCTGCTGGGACGTGTTCAGTAGGCACTAAAACAGGAAGAAAACGCTCTAAGCAGTGCCAAACGGGAAGGTATTATATGGACTTGTCCAGGAAGAAATGCTTGTTTTCtttttccgttgcaaaatgtttaaaatgttttgatacggtgtgccctaatgaacaccatCCCCAACTGACATGAAGGGAGGGGGCTAGAGGTCAGAGTTCAGGAGGTTCCGATTGGAAGAGGGGCCTCTTTATGCAGGGTTACTCATTGATGCACACACCTACTTTTAAGTGCCTTTATACGCTGCAAAGGGATACTGGGGGCTTGTAAGGTAATGACTCCATGTACATATCCATAGACTCCTTGTCACCTgtattgaaaaatatatattattagaTGTATATGCTCACAAGGATGCTGGGAGGGAAAGACCTATGACACACGGAAAGAGATGTCCCCTTAAAGACACAAACCCCTTTATAAACATCTGGCTGTAATGGATTTCAATGTTGGTTGTTAGCTTTATTCGGAGTTGTCACAGTGAACTGACACACATTGAAGTGCTTTGAAACCATGAGTGATGCAAGAAAGCCTGGTTGTCTTCCCAAACTCCCAGATTGGTGCTATGCCTTAATACTGTCATTTGTCTCAGATGTTTTGTCTGGACACTAGTCTAGTTTGTatgctgttttttttgtctggTAAATCTGTTCATAAGGTCCTGATATTTTCCAGCTGGATATCAGTTGCACAGTGGGTATAAATGAAAAAGACTACGGTAGTCATTACAGTAGGCACATTTGATCTCACAAGTCCAAATAAGAATAATATGATAATAGTTCAACAGGGATCCCTTGGTAACAGGATACAGAAATGTTATTTACAGTTTGGTGCTGTTTTTGTTTGGTCTTATCTAATCAGAACCTAATGTGGCAAACTAACAGTGCCAGctggaatagggtaccattgcACCATTCAATTAGGGTTGACATGGATCAAGTATTCAATTGCACAAAGAAGTCCTCTGAAGTAGAAAGATGAATTGATTGATTCCAACAGTTCTCTTGGCAGTATTTCCTTCAATGACAGCAGCTGGGATAAGTCTTGTGAGATTTGGCGCCTTGCCAAATTCGCCTTGCTGAATTTGAATTTTTATGGAAATATCAGAGTTTCCTTGTGTGATACTATTTTGCCAGGTACTCTGAAAAGTGATGGCGGGAAACACAGTAAGACTCCAACAGTAACATTACTTCAGGAAATAGAGCATTTCTGAGGCTAAAGTCAACACAAGTCCTGTTGCCAGGAGTAGCCTTCAGCCTTTTGCTGAAATGACCTACATAATAGATGGTGCTAAAACATCCTTCAATCGTTTTAAAATCACACTGTAATGTGTGGTTTTACTGCAGGTTTAtcaatgtctgtgtgagagtTAGAGATGGGCTTTACAGGTATGTAAAAAGGAGGGGGGCTGTTTTTGTAAAGATTCAAAACAGGATGTCAGAGGGTGCAGGTGAGTTTCCTCTAGTCAGTCATCCAGACACAGCTCAACCCTCATATCACATGCAGAAGGGAGTCCAGAGATCAAACAAAGATAAACTGTTGATCAAAGGGCTGATTAAGTGCAAAGACACAGAGAGTGAATGAAGGACTAAGCAAGACTTTTATATTTGGAACTGAATTGCAAATATAATTCTATATGTGTTTAATGGTGTGACAGACGGTTGCTTTTCAATGGAATGGAAAAAAAAGTGCAAGCTTTCCAAAACCCTTCCAAGTTCTTACAGTACTGTGGCCCTCATAAACCAATTCCTAACCATGCAGGTCAATGCTTTTAACAACAGTTGCATCCTTCAGCCAAGTTCAAACCTCTTCTCACAGCACTTCCTTGAATGTTGTTTTTGTGTCAGAATGGGGAATGGTTTGATAGGAAGTTAGCTTTGAGAAGCTGGCCATTCAGGGGTGAACTTTTAATTTAGAAAGTTAGCTAGTAGACACAGGTGTAGAGATGTCACAATTCGAGAACTATTCTTCCTTTACTCATGACAAAATGCTCCAATGAATTCAAAGCTGTTTTGCTGTTCAAGTTACTTGATTGTTTGTCTCCTTATGGTGCTAAATAATGTACAAAAAGGTGCTACATTATATTTAGTTTTATAATTCAAATAAATGTACATATTCTGCTTGAACATGGATGACATATGACCAATACATATTTTACATGAACTTTGCAAACCTTTGTTAATAAAGATATTGACACAT
>XM_021624562.2
ctctcctctctctcctcagctgaTCAACACCACTTGAAGAGACTTCTACAAGAGCAACCATGTttgaccacctcctcctcctgagccccatcctcctgttcctccctctggTCATCACTGTCCCGTCCCCCGGAGGTGCCCCTCCTACCCCCTGCCGCCGCTGCTGTGACGACCTGGAGCTACAGAAAGGCCCCCCAGCCCCTCAGACGGGGGACCAAAAGAGTGGCCTGAACCAGATGCCTGAAGTCCGCACCTACATCAACATGACTATCCTCAAAGGGGACAAGGGAAACCGCGGGGACAGGGGTACGCCTGGGAAATCTGGTGAGGAAGGCGCTACTGGATCCCGAGGGCCAATGGGCCCCAAAGGAACCAAGGGCCAGGTGGGCCCCCCAGGGGACCCCTGCAAGACCCAGGAAGCAGCCTTCTCAGTGGGGCGTCGCAAGTCCCTCCACAGCGTGGACTACTACCAGGCCCTGGTGTTCGACACAGAGTTCGTCAACCTCCATGGCCACTTCGACATGTTCAAAGGAAAGTTCAACTGCTATGTCCCTGGGATCTACTTCTTCAATGTCAACATCCACACCTGGAACTTTAAGGAGACCTACCTGCACATAATGAGGAATGACAAGGAGCAGGCCATCGTGTACGCCCAGCCCAGCGAGAGGTCCATCATGCAGAGCCAGAGCCTTATGTTGCCCCTTGAGCTCAATGACGAGGTGTGGGTCCGGCTGtacaagagggagagggagaacgcTGTGTATAGTGACGATGTGGATGTCTACATCACCTTCAACGGATACCTCATCAAGCCCACCCTGGAGTGAGATGACCTGCTGGGACGTGTTCAGTAGGCACTAAAACAGGAAGAAAACGCTCTAAGCAGTGCCAAACGGGAAGGTATTATATGGACTTGTCCAGGAAGAAATGCTTGTTTTCtttttccgttgcaaaatgtttaaaatgttttgatacggtgtgccctaatgaacaccatCCCCAACTGACATGAAGGGAGGGGGCTAGAGGTCAGAGTTCAGGAGGTTCCGATTGGAAGAGGGGCCTCTTTATGCAGGGTTACTCATTGATGCACACACCTACTTTTAAGTGCCTTTATACGCTGCAAAGGGATACTGGGGGCTTGTAAGGTAATGACTCCATGTACATATCCATAGACTCCTTGTCACCTgtattgaaaaatatatattattagaTGTATATGCTCACAAGGATGCTGGGAGGGAAAGACCTATGACACACGGAAAGAGATGTCCCCTTAAAGACACAAACCCCTTTATAAACATCTGGCTGTAATGGATTTCAATGTTGGTTGTTAGCTTTATTCGGAGTTGTCACAGTGAACTGACACACATTGAAGTGCTTTGAAACCATGAGTGATGCAAGAAAGCCTGGTTGTCTTCCCAAACTCCCAGATTGGTGCTATGCCTTAATACTGTCATTTGTCTCAGATGTTTTGTCTGGACACTAGTCTAGTTTGTatgctgttttttttgtctggTAAATCTGTTCATAAGGTCCTGATATTTTCCAGCTGGATATCAGTTGCACAGTGGGTATAAATGAAAAAGACTACGGTAGTCATTACAGTAGGCACATTTGATCTCACAAGTCCAAATAAGAATAATATGATAATAGTTCAACAGGGATCCCTTGGTAACAGGATACAGAAATGTTATTTACAGTTTGGTGCTGTTTTTGTTTGGTCTTATCTAATCAGAACCTAATGTGGCAAACTAACAGTGCCAGctggaatagggtaccattgcACCATTCAATTAGGGTTGACATGGATCAAGTATTCAATTGCACAAAGAAGTCCTCTGAAGTAGAAAGATGAATTGATTGATTCCAACAGTTCTCTTGGCAGTATTTCCTTCAATGACAGCAGCTGGGATAAGTCTTGTGAGATTTGGCGCCTTGCCAAATTCGCCTTGCTGAATTTGAATTTTTATGGAAATATCAGAGTTTCCTTGTGTGATACTATTTTGCCAGGTACTCTGAAAAGTGATGGCGGGAAACACAGTAAGACTCCAACAGTAACATTACTTCAGGAAATAGAGCATTTCTGAGGCTAAAGTCAACACAAGTCCTGTTGCCAGGAGTAGCCTTCAGCCTTTTGCTGAAATGACCTACATAATAGATGGTGCTAAAACATCCTTCAATCGTTTTAAAATCACACTGTAATGTGTGGTTTTACTGCAGGTTTAtcaatgtctgtgtgagagtTAGAGATGGGCTTTACAGGTATGTAAAAAGGAGGGGGGCTGTTTTTGTAAAGATTCAAAACAGGATGTCAGAGGGTGCAGGTGAGTTTCCTCTAGTCAGTCATCCAGACACAGCTCAACCCTCATATCACATGCAGAAGGGAGTCCAGAGATCAAACAAAGATAAACTGTTGATCAAAGGGCTGATTAAGTGCAAAGACACAGAGAGTGAATGAAGGACTAAGCAAGACTTTTATATTTGGAACTGAATTGCAAATATAATTCTATATGTGTTTAATGGTGTGACAGACGGTTGCTTTTCAATGGAATGGAAAAAAAAGTGCAAGCTTTCCAAAACCCTTCCAAGTTCTTACAGTACTGTGGCCCTCATAAACCAATTCCTAACCATGCAGGTCAATGCTTTTAACAACAGTTGCATCCTTCAGCCAAGTTCAAACCTCTTCTCACAGCACTTCCTTGAATGTTGTTTTTGTGTCAGAATGGGGAATGGTTTGATAGGAAGTTAGCTTTGAGAAGCTGGCCATTCAGGGGTGAACTTTTAATTTAGAAAGTTAGCTAGTAGACACAGGTGTAGAGATGTCACAATTCGAGAACTATTCTTCCTTTACTCATGACAAAATGCTCCAATGAATTCAAAGCTGTTTTGCTGTTCAAGTTACTTGATTGTTTGTCTCCTTATGGTGCTAAATAATGTACAAAAAGGTGCTACATTATATTTAGTTTTATAATTCAAATAAATGTACATATTCTGCTTGAACATGGATGACATATGACCAATACATATTTTACATGAACTTTGCAAACCTTTGTTAATAAAGATATTGACACAT

Function

symbol description
c1qtnf6 Predicted to enable identical protein binding activity. Predicted to be located in extracellular space. Predicted to be integral component of membrane. Predicted to be part of protein-containing complex.

NR:

description
complement C1q tumor necrosis factor-related protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021624561.2 False 3104 mRNA 0.44 3 64522838 64537399
XM_021624562.2 True 3076 mRNA 0.44 3 64522860 64537399

Neighbor

gene id symbol gene type direction distance location
il2rb il2rb1 coding upstream 32177 64485078 ~ 64490661 (+)
LOC110539154 tex33 coding upstream 44713 64475712 ~ 64478125 (+)
LOC110538025 LOC105029658 coding upstream 47427 64470116 ~ 64475411 (+)
LOC110538023 LOC106600884 coding upstream 61721 64459297 ~ 64461117 (+)
LOC110538024 LOC106600885 coding upstream 77681 64443760 ~ 64445157 (+)
crhr1 LOC106600876 coding downstream 413632 64951031 ~ 65117379 (+)
cdc27 LOC106600875 coding downstream 713055 65250454 ~ 65283926 (+)
kansl1b LOC106600871 coding downstream 750264 65287663 ~ 65369708 (+)
scn4ab LOC106600868 coding downstream 923131 65460530 ~ 65496809 (+)
gh1 gh1 coding downstream 979830 65517229 ~ 65521363 (+)
G1099280 LOC105030512 non-coding upstream 60078 64462394 ~ 64462760 (+)
G1099258 LOC106600887 non-coding upstream 96116 64425645 ~ 64426722 (+)
G1099241 NA non-coding upstream 144327 64378311 ~ 64378511 (+)
G1099187 LOC106600892 non-coding upstream 162976 64349651 ~ 64359862 (+)
G1099213 NA non-coding upstream 185366 64337217 ~ 64337472 (+)
G1099325 LOC106600973 non-coding downstream 7109 64544508 ~ 64548249 (+)
G1099336 NA non-coding downstream 23250 64560649 ~ 64566188 (+)
G1099326 LOC106600880 non-coding downstream 51580 64588979 ~ 64613235 (+)
G1099365 NA non-coding downstream 77254 64614653 ~ 64614954 (+)
G1099377 NA non-coding downstream 98809 64636208 ~ 64652489 (+)
si:dkey-110g7.8 LOC106600891 other upstream 146624 64369958 ~ 64376356 (+)
G1097122 NA other upstream 267774 64254612 ~ 64255064 (+)
G1097116 NA other upstream 294154 64228001 ~ 64228684 (+)
G1097063 NA other upstream 386134 64136358 ~ 64136704 (+)
LOC110538933 LOC106600901 other upstream 632281 63888086 ~ 63908673 (+)
G1100432 NA other downstream 895741 65433140 ~ 65433457 (+)
LOC110538063 abi1 other downstream 1611810 66148710 ~ 66168256 (+)
LOC110538072 psd3 other downstream 2124565 66661875 ~ 66670815 (+)
G1101805 NA other downstream 2187262 66724661 ~ 66822261 (+)
G1102021 NA other downstream 2521336 67058735 ~ 67059407 (+)

Expression


Co-expression Network